Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0111101 | OGI:05065100 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:534660-535274 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTGGTTCAATGAAGCCGGCCGATGGAGGGGCGTCGGTCAGGTGTGGTGGAAGCCATGTGCCGCCGATGTTCAGATGGCGGATTCGGATTGGGTGACGTACCATGGTGGTAGAGGGTGCCGAGCGAAAGCTTAGCCCAATTCTTTGGGCCAATAGTGACTTCGTCTTCGGGCGTAGTAACCCTCTTGAGGGCACTGTTGAGGTATCCCTCCTCCCTCGGCAAGGAGCTCTGGGTGAAAACCTTGTCCAGTCTTTGGATGGATGACAGCGGTGTCTTTTGGCGTCGTGACCCTCGTGAGGGTGTTATTTTAGAGTCTTCGTGTCGTAGTGGTGTCGTTAGCTCAGTGGCGATCGGTCTCGCATAGCGATGGCTAGTTCGGTGCTTGGCTTTCCTCTCTGTAGTGTGTGTTTGGACGGTTGGCACATGGTTCGGGGTGTGTGCTCTGGTGCACATCCTTCCTCGACAGCCAGCTGTCGACGTAAAACTTTTTTTTTAACTTTTTCTTCCTATCTTAATTATATTGAATGACCTCCTTCGGTCATTCCAGAAAAAAAAAAAGAAGATTCTTTCAGACTAAAACTAAGAAAAAACAGAAAAAAATAACAGAGGAGCTTG
More
|
||||||||||
| CDS seq | AGGGTGCCGAGCGAAAGCTTAGCCCAATTCTTTGGGCCAATAGTGACTTCGTCTTCGGGCGTAGTAACCCTCTTGAGGGCACTGTTGAGGTATCCCTCCTCCCTCGGCAAGGAGCTCTGGGTGAAAACCTTGTCCAGTCTTTGGATGGATGACAGCGGTGTCTTTTGGCGTCGTGACCCTCGTGAGGGTGTTATTTTAGAGTCTTCGTGTCGTAGTGGTGTCGTTAGCTCAGTGGCGATCGGTCTCGCATAG |
||||||||||
| Protein seq | RVPSESLAQFFGPIVTSSSGVVTLLRALLRYPSSLGKELWVKTLSSLWMDDSGVFWRRDPREGVILESSCRSGVVSSVAIGLA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0111101 | Os11t0111101-01 | Chr11 | 534660 | 535274 | + | irgsp1_rep | ||
| CDS seq | AGGGTGCCGAGCGAAAGCTTAGCCCAATTCTTTGGGCCAATAGTGACTTCGTCTTCGGGCGTAGTAACCCTCTTGAGGGCACTGTTGAGGTATCCCTCCTCCCTCGGCAAGGAGCTCTGGGTGAAAACCTTGTCCAGTCTTTGGATGGATGACAGCGGTGTCTTTTGGCGTCGTGACCCTCGTGAGGGTGTTATTTTAGAGTCTTCGTGTCGTAGTGGTGTCGTTAGCTCAGTGGCGATCGGTCTCGCATAG
More
|
|||||||
| Protein seq | RVPSESLAQFFGPIVTSSSGVVTLLRALLRYPSSLGKELWVKTLSSLWMDDSGVFWRRDPREGVILESSCRSGVVSSVAIGLA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0111101 | RBH | 0.0 | 0.0 | 0.970271 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g16490 | SBH | 0.692906 | 0.656954 | 0.852002 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0145566 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0008461 | RBH | 0.0 | 0.0 | 0.853052 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022380 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
