Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0372000 | OGI:05065100 | 13/16 | Minghui 63 | MH63RS3 | HZAU | Chr05:25104455-25108237 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTATGGAGCATGATACGACAGGTTATATTTCTCTTTCTACTTACCATAGTTTATTTTTCTGACGTATCTACCTAACAGATATTACATGTTGTTGCTGTTTGTAGTTGTACTGGAGGGTGAGCTGTCGTGCTTTCGACATATAAAGAAGTTATCAATAGAGAATCTAAAGCATTATCCCATGCTGATCATCTTTTGCAAAGTGGCATCACTTGTGGGAGCGCAGGCAGTTGTAAAGACTGATCCTGGTAGCAGTTCTAGAATTGTAAGTTGCATATGACCTGGAACTTTCTGATCTATCTTTCAACCTCTTCAATTGAGTTGCCTCTGCATCTGCAAGCATGCCTTGCCTGTTCAACAGTAGGATTGCAGTGAGTTGTTTGTATGAGCTAACAATGCAGAGTCAACACCCCAGGGTATAGGTGTCTCTTAATTGTTATTATGATCAGGTCAATAGAAAAAAGGGATAAGAGTTTCTTGTTGTTCTTTTTTTTTGTTTGTTTATGTAAGATGGATGTTTTTTTTTCTTCTATTAATTTTTTGTGGTAAATAAGGAAACAGTTTTATTTTTAGAATCTTTCAATTGTCAATAATATTGGACCCTTTTAATTTTCTGACCCTTTTTGCTGAGAAGAGTTCCTTTTCCAATCTTCTTGATCATCCTTTGTAAATTGGTCATTGGTACCATACAAAGCAAAGTACAAATCCGGTTGGAACCAAGCCATCCCAGTTGCATGGGTTACTTATCTCGTAAATGTAGGTTCTTTGTCCAGGCACCATGAGCTTAGTGAATGAAGGGATTCTTGTGCTCAAGCAATCTCCTCAGCATCAATTCTTTCTTGTTGTCCTTGGCATCTGTGTTCATCTTCAAGTTGCCCTGCAGCCCTGCACAATACAATTTTCTTTCTCATCAATGCTCTTAGATGCGCAGTTCTCGTCTTTTTTCTGATGCGCCTTGCCGGCATCCTAATCTCAATATTCCTTGCGCAGCACAGAAGCTTTCAGTAGCTTTCACAGAATATATGCTGCCTGAGCGTGCAAATAAACTATCGTAGCGACGACTATCTTGCGCTTAGTGATAGTTACTGTTCAGGGATGCTTTCTTGATCAACTAGTCTGGTCTAGTGGTTATGTGATGCTCTTGTAGTTCATGGGCACTGGGTGTTTGGGGAAGCACCTGAAGGATTCATTCCTGATATGGTATCTAATGCCAAATTTGCACTCTATATGTTTTACCTTGTTTATGACTGCGGGTGTAGTAATGTTCTCTGATGCCATGTGGTAATAGCTAGATTTGTTTGAACGTAATCTAAGGTTATATAAGATTACACTGAGGCAATGAGGGGGGCATCTTTGATATTTCTTCCTTGGGAGTATCGTTGGAGCATATGGAATTTCTACTCCTGGTCAGTGCTTTTGGGCTTCCTCACTTTTTCATATTCCAATGATCAGATTAGCATTAGTCGTTGTCATGAGAAATATTCCTCTTAGAATGTGAGCAGTTGTGCCACATTTCGCTTCCTGGTTTATCGCAGGATTGGAGGTGCACTCTCTCCATGTTACCAACCACCTGCTGAAAACTTCGTTTGTGCTATTTCGCCACATTGCAAATGTGCAAATCACTTGGTACGGGTGGCAGAAATTTCATCAGTCAACAGTCGTAATTAGATCGAACCTTGTGTCATATGCTTAGTCCTTCTGCCTCATTTGTTTCACTGTACTTGTATTAACAGCATAGCTTGTGGCCTATGGACAACTTTTTGCAGCCGTTTTCATCAATTGAACTGAAGAATGGACTCAAGCCATCCAGGATTCCAGTCCCAGATGATGCTGGTGGAGCAAAGTCAAGAGGTCTCAGTAAGGAATGCTTTCTTTGCCTTCCCATTCCATCTCTGATCAAGTGACCATTTGATATGATCCACTGAGAAAACCACCACATTCTTGTAAACTAACAGTATCACACTTATGCAACTCAAATCTTCTTAGCAGGATGATTTTTTTGCGCTGGTGAACCGGTTGCCGGAGAGGGGCAGCCGAATCTTTTGCCGCCGACCTGACTGACGGTGCAAATCCCCAGCGCGGGATACGGTGGAAGGCGATCGGCCGAACCCGGTCTGCTCCACGGCTCAATTCATTCATTGTCAATGCGCGCATCTACTGAAGAAGCTGATAAGCTGTCTGGCTGGGCTAACCGAAAGTCGTGTGCAAATGCAATGGCATCGTCAGCTCGTCGCGGTCGTGGATGGCGAGTTGGCGACGCGTTGGTGCGTGGCCGTGCGTCTGTCTTTTGCTTCGCACGATCATCAGTTTTGCAGTTGCCTTCATCGTGGCTTTATTTGACCATGAGCTCCGGCCATCTGAATCCCCAGGAGCCCATTGATACGTGCACCTAATTAAGAGCCACATTTGCATGAAGCATTGGAGGGGGCAAATTCTGAAGCTTTCGTTTTTGCAGTGGTATAAAGCAGCTAAGGGCCTTGGTAGAGTTCCAACTTCTAAATTTAACTTCAGGAGTTGGGTCTGGAGTGGAGTTGTGGAGCTGTCCAAACCCAGCTCCACTTCTCTAGTTCATTTTGGGCCTGTTTGGTACAGCTCCAACTCCTAAATATTGCTCCAGGAGTTGAGTCTGGAGTGGAGTTGTGGAGCTGCCTAAACCCAGCTCCACAACTCTAGTACATTTTGTGAGAGAGCTCCACCTAACTCCACTCCCAGTTTTGGTGGAGCTGAAACTGTTTGGCTAAACTCCAGCTTCAAGAGGGGTGGAGCTGGAGTTGGAGCTGTACCAAATAGGCCCTTTGTGAGAGAGTTTCATCTAGCTCCACTCCCATTTTAGGTGGAGCTGAAACTGTTTGGCTGGGTTCTAGCTCCAGGAGATGTGGAGCTGGAGCTGAGGCTCTATCTCTTGTTTTTTTTCTTCTTTTGGAAAGCTAAATTCCCTATTGTAAAAATGTGAGTTTTCTAACTGCCAACAATTATAGTTAACTACAGTAACATATTTCAAAATTGAATGTTCTTCTAACATATTGACGGGTAAGCCTTCTTGTGAAAACATATATAGGCCTTGTTTAGTTCCAAACTTTTTCTTCAAACTTCTAACTTTTCTATCACATCAAAACTTTCCTACACACATAAACTTCCAACTTTTCCATCACATCGTTCCAATTTCAACCAAACTTCCAATTTCTGTGTGAACTAAACACACCCATATATGTTTGAGCTTTCTGACTATCGGCAGAGCCCCTCAGTACCGCTGTTACAATTAGTTCAGTTTTCACAACTTACCTATTGGTTTTTCCGGTGCATATCTTTCTTCGGAGAAAACATTCCTTCCCAAGTTTCAACTTCTGTATGGGTTGGTTTTAAATCTTACCGTAGATTATTTGAACTGAGATTTCTCGCTTTCTACTCCACGTGGATCAAATTTCAACACAAAAACTCGCTCATCGTAATACATACTCAGTTTTTGTGCTGAAAACTGAGTAACTTTGATCCACGTGGAAAACTGAACTCAGTTATAACTCATCATAGCTTTGATGTATTACGACGAGTTATAACCAAAAATATAACTTTCAGCTCAAACTTATTTGGACTAAAAATATAGACCAGGTTTCTTTGGGCCAACAGTGACTACGCTTTCAGACGTGGTAATCCTCCTGAGGGCACTATTGAGGTACCCCTCCTCCCTCGGCAAGGAGTTCTGGGTGAAAACCTTGTCCAGTCTTTGGATGGACGACGACGGCGTCATTCGGCGTCGCGACCTTCGTGAGGGCGTCGTTTTTTAG
More
|
||||||||||
| CDS seq | ATGGGTATGGAGCATGATACGACAGTTGTACTGGAGGGTGAGCTGTCGTGCTTTCGACATATAAAGAAGTTATCAATAGAGAATCTAAAGCATTATCCCATGCTGATCATCTTTTGCAAAGTGGCATCACTTGTGGGAGCGCAGGCAGTTGTAAAGACTGATCCTGGTAGCAGTTCTAGAATTCCGTTTTCATCAATTGAACTGAAGAATGGACTCAAGCCATCCAGGATTCCAGTCCCAGATGATGCTGGTGGAGCAAAGTCAAGAGGTCTCAACGTGGTAATCCTCCTGAGGGCACTATTGAGGTACCCCTCCTCCCTCGGCAAGGAGTTCTGGGTGAAAACCTTGTCCAGTCTTTGGATGGACGACGACGGCGTCATTCGGCGTCGCGACCTTCGTGAGGGCGTCGTTTTTTAG
More
|
||||||||||
| Protein seq | MGMEHDTTVVLEGELSCFRHIKKLSIENLKHYPMLIIFCKVASLVGAQAVVKTDPGSSSRIPFSSIELKNGLKPSRIPVPDDAGGAKSRGLNVVILLRALLRYPSSLGKEFWVKTLSSLWMDDDGVIRRRDLREGVVF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0372000 | OsMH63_05T0372000.1 | Chr05 | 25104455 | 25108237 | + | maker | ||
| CDS seq | ATGGGTATGGAGCATGATACGACAGTTGTACTGGAGGGTGAGCTGTCGTGCTTTCGACATATAAAGAAGTTATCAATAGAGAATCTAAAGCATTATCCCATGCTGATCATCTTTTGCAAAGTGGCATCACTTGTGGGAGCGCAGGCAGTTGTAAAGACTGATCCTGGTAGCAGTTCTAGAATTCCGTTTTCATCAATTGAACTGAAGAATGGACTCAAGCCATCCAGGATTCCAGTCCCAGATGATGCTGGTGGAGCAAAGTCAAGAGGTCTCAACGTGGTAATCCTCCTGAGGGCACTATTGAGGTACCCCTCCTCCCTCGGCAAGGAGTTCTGGGTGAAAACCTTGTCCAGTCTTTGGATGGACGACGACGGCGTCATTCGGCGTCGCGACCTTCGTGAGGGCGTCGTTTTTTAG
More
|
|||||||
| Protein seq | MGMEHDTTVVLEGELSCFRHIKKLSIENLKHYPMLIIFCKVASLVGAQAVVKTDPGSSSRIPFSSIELKNGLKPSRIPVPDDAGGAKSRGLNVVILLRALLRYPSSLGKEFWVKTLSSLWMDDDGVIRRRDLREGVVF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.3100635 | 0.934851 | 1.499051 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0008461 | RBH | 0.0 | 0.0 | 0.853052 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021470 | RBH | 0.0 | 0.0 | 1.039399 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024940 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024570 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0381700 | RBH | 0.6653065 | 1.5382405 | 1.537495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024830 | RBH | 2.473876 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024830 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024320 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
