Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0023900 | OGI:01013300 | 5/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:23886863-23887266 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaaacgacaccctcacaagggttgcggcgccaaaagacgccgtcatcatccgtccaaagctggacaaggttttcacccagagttccttgccgagggaggaggggtacctcaacaatgcctttaggagggttaccacgctagaaggcgtaatcactgttgccccaaagaaattgggctaagctttcgctcgaaaccccttaccgccatggtccgtcgcccaatccgaaaccaccatataaacattggcagcacatggcttctgccatacccgaccgacgcccctccgccggtcagcttccagtcctgccaacgacaagactgccaccacactgcaccgacgccccaccatcggctgacttcatcgaaccaccatccctgagagttggcccaggacccctccat
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| CDS seq | atggaggggtcctgggccaactctcagggatggtggttcgatgaagtcagccgatggtggggcgtcggtgcagtgtggtggcagtcttgtcgttggcaggactggaagctgaccggcggaggggcgtcggtcggcgtggtaaccctcctaaaggcattgttgaggtacccctcctccctcggcaaggaactctgggtgaaaaccttgtccagctttggacggatgatgacggcgtcttttggcgccgcaacccttgtgagggtgtcgttttag |
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| Protein seq | MEGSWANSQGWWFDEVSRWWGVGAVWWQSCRWQDWKLTGGGASVGVVTLLKALLRYPSSLGKELWVKTLSSFGRMMTASFGAATLVRVSF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0023900 | OsKeNa_01g0023900.01 | Chr01 | 23886863 | 23887266 | - | NAM | ||
| CDS seq | atggaggggtcctgggccaactctcagggatggtggttcgatgaagtcagccgatggtggggcgtcggtgcagtgtggtggcagtcttgtcgttggcaggactggaagctgaccggcggaggggcgtcggtcggcgtggtaaccctcctaaaggcattgttgaggtacccctcctccctcggcaaggaactctgggtgaaaaccttgtccagctttggacggatgatgacggcgtcttttggcgccgcaacccttgtgagggtgtcgttttag
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| Protein seq | MEGSWANSQGWWFDEVSRWWGVGAVWWQSCRWQDWKLTGGGASVGVVTLLKALLRYPSSLGKELWVKTLSSFGRMMTASFGAATLVRVSF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024310 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0008461 | RBH | 0.0 | 0.0 | 0.853052 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023250 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0385100 | RBH | 0.3816875 | 3.1896915 | 5.938272 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023400 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
