Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0005420 | OGI:04027980 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:7680949-7683439 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagacagaagccatgtaatccttttttatcttcgtcagtctcacaaccacatcgctcattgtcattctttggtctggcaattcatgtgagcatagtaaacccaactcaaaaactgggactataaagttgttcaatgaactagaggaatcttgcaccagtaaccggttatccaccacatccatgacatttgatggaaatgcactagtaacccactgccttagagatagttctccaacaaacatgggatcagttggcctcttcccagtgaataactccagaagcataataccgtagctgaatgcatctcttttccgtgatgctttcccaactgacccatactctggtaatatttttttccaaacaggagaggaataaattagtagcaaaactaatagttgaataaaaacgagacaaaaaaaaacatactagaaatacctggtgccatataaccaattgttccaggcatacttgcagaaataacagagttgtcgtcaccacgtaacagttttgcaatcccgaaatcagccaccaatgcaaccatgtcttggtcgaataggacattgctaggcttcaagtcacagtgtaggactacctcacagtgatgatagtgaagatactccattgccatggacacatccaacagaatgtccagtctctgaaggaatcccagttgctctccaccttgagagtgtagctgtgtttctaagcttcccttgggcatgtagggaagaaccaaagctctgaagtccaggttggaacatgtggtgagtatcctaatcaagttgcgatgccgggccatgcgcagggcatgacactccgaatcgaagcttctcatagcttgttccagctccatgctcagaacttttattgccaccatagtaccgttgttcagttggcccttgaaaacttgtccaaagcttccagcccccaacaagttagtctcactaaaattatccgtggcttggacaatgtcatggtaagagatcaacctgttgttgagcacatcttccatataagcagaaaggattctatcttgttgcttggctttcttcctcatcatcatgtacatgcatgtggctataactccgacaacaataataacactggggagcaagaattttagtatgtgccttttattactattattgttgctcttacatggcataaaccccaaacgtggaacaccaccacagagggctgggatgcccatcaaagattgcagattgatgtttgcaaagattccaccttctggtattggaccatgtaggttattgaatgaaaggttcaagctagagagatcagtaaaatctgctaaaatagtgtggaattggacctgatagatcattgtatgaaacatccagtgatttcaagttgatcaacttgtcaaaagagtttggaaatgaaccatttagcgagtgtgtgataggttcagatatgttgtcattagaaactgtcaaaaggagtcagggatcctaccaaacaaccggttggcagagagatcaatcgtgtcaatatgatttagctgcgctatatcaactggcaatgcaccttccaaggagttctaagacagatcaatagttatcaagctattcatgtggaataggcttgccggtatggttgatggcatatgatttcttagatagaacaagatattgtagattatccaagatcgtttggtagcacactagagaagttgttgttattgagtaatagtgtttgtaggttccttagatgacctatttgtcttgggattgtgccagacatcatatttccagagagattaataacttggagcttgtccattagcatgattgattctggaatattgccagtcaattgattttctgataggtctaactcaatgaggttgcttaaatttgatagggtagaaggaatctcaccggacaacttgtttcctacggcaaagaaatttaccagagtacttgagaagtttccgacatagtcagggagcttccctgtaaaatcattcaagtcgaagccaacttcccagatattttgacagtttgaaagtgtagccaagaagtcgaggctcccttgtaggtagttccctccaatattaaaccactcaattgatcccgtgctaccgattgcagttggtactgctccagtaaaactattagcaccaatcaagaatacagctagttccgaaaaattggcaaaaaaggtagggatggatcctgtaaaatgattatggtcgaggtatagccctttgattttcctgagctgtgcaagttcttgtggaatctgtcctgttaaattgcaggattgaagggcaagggtgtgaagattactaagattacccaatgcagatgggatcggaccaacaaggttattagtctgtaaaacaagtaatacgaggtctggcagttttcccaaccatgctggcactgggccctcgaataaattctgtccaaggaaaatcttttggaggtatttgcagtctgcaagcccgaatggaatcggtcccat
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| CDS seq | atgggaccgattccattcgggcttgcagactgcaaatacctccaaaagattttccttggacagaatttattcgagggcccagtgccagcatggttgggaaaactgccagacctcgtattacttgttttacagactaataaccttgttggtccgatcccatctgcattgggtaatcttagtaatcttcacacccttgcccttcaatcctgcaatttaacaggacagattccacaagaacttgcacagctcaggaaaatcaaagggctatacctcgaccataatcattttacaggatccatccctaccttttttgccaatttttcggaactagctgtattcttgattggtgctaatagttttactggagcagtaccaactgcaatcggtagcacgggatcaattgagtggtttaatattggagggaactacctacaagggagcctcgacttcttggctacactttcaaactgtcaaaatatctgggaagttggcttcgacttgaatgattttacagggaagctccctgactatgtcggaaacttctcaagtactctggtaaatttctttgccgtaggaaacaagttgtccggtgagattccttctaccctatcaaatttaagcaacctcattgagttagacctatcagaaaatcaattgactggcaatattccagaatcaatcatgctaatggacaagctccaagtccaattccacactattttagcagattttactgatctctctagcttgaacctttcattcaataacctacatggtccaataccagaaggtggaatctttgcaaacatcaatctgcaatctttgatgggcatcccagccctctgtggtggtgttccacgtttggggtttatgccatgtaagagcaacaataatagtaataaaaggcacatactaaaattcttgctccccagtgttattattgttgtcggagttatagccacatgcatgtacatgatgatgaggaagaaagccaagcaacaagatagaatcctttctgcttatatggaagatgtgctcaacaacaggttgatctcttaccatgacattgtccaagccacggataattttagtgagactaacttgttgggggctggaagctttggacaagttttcaagggccaactgaacaacggtactatggtggcaataaaagttctgagcatggagctggaacaagctatgagaagcttcgattcggagtgtcatgccctgcgcatggcccggcatcgcaacttgattaggatactcaccacatgttccaacctggacttcagagctttggttcttccctacatgcccaagggaagcttagaaacacagctacactctcaaggtggagagcaactgggattccttcagagactggacattctgttggatgtgtccatggcaatggagtatcttcactatcatcactgtgaggtagtcctacactgtgacttgaagcctagcaatgtcctattcgaccaagacatggttgcattggtggctgatttcgggattgcaaaactgttacgtggtgacgacaactctgttatttctgcaagtatgcctggaacaattggttatatggcaccagagtatgggtcagttgggaaagcatcacggaaaagagatgcattcagctacggtattatgcttctggagttattcactgggaagaggccaactgatcccatgtttgttggagaactatctctaaggcagtgggttactagtgcatttccatcaaatgtcatggatgtggtggataaccggttactggtgcaagattcctctagttcattgaacaactttatagtcccagtttttgagttgggtttactatgctcacatgaattgccagaccaaagaatgacaatgagcgatgtggttgtgagactgacgaagataaaaaaggattacatggcttctgtctaa
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| Protein seq | MGPIPFGLADCKYLQKIFLGQNLFEGPVPAWLGKLPDLVLLVLQTNNLVGPIPSALGNLSNLHTLALQSCNLTGQIPQELAQLRKIKGLYLDHNHFTGSIPTFFANFSELAVFLIGANSFTGAVPTAIGSTGSIEWFNIGGNYLQGSLDFLATLSNCQNIWEVGFDLNDFTGKLPDYVGNFSSTLVNFFAVGNKLSGEIPSTLSNLSNLIELDLSENQLTGNIPESIMLMDKLQVQFHTILADFTDLSSLNLSFNNLHGPIPEGGIFANINLQSLMGIPALCGGVPRLGFMPCKSNNNSNKRHILKFLLPSVIIVVGVIATCMYMMMRKKAKQQDRILSAYMEDVLNNRLISYHDIVQATDNFSETNLLGAGSFGQVFKGQLNNGTMVAIKVLSMELEQAMRSFDSECHALRMARHRNLIRILTTCSNLDFRALVLPYMPKGSLETQLHSQGGEQLGFLQRLDILLDVSMAMEYLHYHHCEVVLHCDLKPSNVLFDQDMVALVADFGIAKLLRGDDNSVISASMPGTIGYMAPEYGSVGKASRKRDAFSYGIMLLELFTGKRPTDPMFVGELSLRQWVTSAFPSNVMDVVDNRLLVQDSSSSLNNFIVPVFELGLLCSHELPDQRMTMSDVVVRLTKIKKDYMASV |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0005420 | OsKeNa_04g0005420.01 | Chr04 | 7680949 | 7683439 | - | NAM | ||
| CDS seq | atgggaccgattccattcgggcttgcagactgcaaatacctccaaaagattttccttggacagaatttattcgagggcccagtgccagcatggttgggaaaactgccagacctcgtattacttgttttacagactaataaccttgttggtccgatcccatctgcattgggtaatcttagtaatcttcacacccttgcccttcaatcctgcaatttaacaggacagattccacaagaacttgcacagctcaggaaaatcaaagggctatacctcgaccataatcattttacaggatccatccctaccttttttgccaatttttcggaactagctgtattcttgattggtgctaatagttttactggagcagtaccaactgcaatcggtagcacgggatcaattgagtggtttaatattggagggaactacctacaagggagcctcgacttcttggctacactttcaaactgtcaaaatatctgggaagttggcttcgacttgaatgattttacagggaagctccctgactatgtcggaaacttctcaagtactctggtaaatttctttgccgtaggaaacaagttgtccggtgagattccttctaccctatcaaatttaagcaacctcattgagttagacctatcagaaaatcaattgactggcaatattccagaatcaatcatgctaatggacaagctccaagtccaattccacactattttagcagattttactgatctctctagcttgaacctttcattcaataacctacatggtccaataccagaaggtggaatctttgcaaacatcaatctgcaatctttgatgggcatcccagccctctgtggtggtgttccacgtttggggtttatgccatgtaagagcaacaataatagtaataaaaggcacatactaaaattcttgctccccagtgttattattgttgtcggagttatagccacatgcatgtacatgatgatgaggaagaaagccaagcaacaagatagaatcctttctgcttatatggaagatgtgctcaacaacaggttgatctcttaccatgacattgtccaagccacggataattttagtgagactaacttgttgggggctggaagctttggacaagttttcaagggccaactgaacaacggtactatggtggcaataaaagttctgagcatggagctggaacaagctatgagaagcttcgattcggagtgtcatgccctgcgcatggcccggcatcgcaacttgattaggatactcaccacatgttccaacctggacttcagagctttggttcttccctacatgcccaagggaagcttagaaacacagctacactctcaaggtggagagcaactgggattccttcagagactggacattctgttggatgtgtccatggcaatggagtatcttcactatcatcactgtgaggtagtcctacactgtgacttgaagcctagcaatgtcctattcgaccaagacatggttgcattggtggctgatttcgggattgcaaaactgttacgtggtgacgacaactctgttatttctgcaagtatgcctggaacaattggttatatggcaccagagtatgggtcagttgggaaagcatcacggaaaagagatgcattcagctacggtattatgcttctggagttattcactgggaagaggccaactgatcccatgtttgttggagaactatctctaaggcagtgggttactagtgcatttccatcaaatgtcatggatgtggtggataaccggttactggtgcaagattcctctagttcattgaacaactttatagtcccagtttttgagttgggtttactatgctcacatgaattgccagaccaaagaatgacaatgagcgatgtggttgtgagactgacgaagataaaaaaggattacatggcttctgtctaa
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| Protein seq | MGPIPFGLADCKYLQKIFLGQNLFEGPVPAWLGKLPDLVLLVLQTNNLVGPIPSALGNLSNLHTLALQSCNLTGQIPQELAQLRKIKGLYLDHNHFTGSIPTFFANFSELAVFLIGANSFTGAVPTAIGSTGSIEWFNIGGNYLQGSLDFLATLSNCQNIWEVGFDLNDFTGKLPDYVGNFSSTLVNFFAVGNKLSGEIPSTLSNLSNLIELDLSENQLTGNIPESIMLMDKLQVQFHTILADFTDLSSLNLSFNNLHGPIPEGGIFANINLQSLMGIPALCGGVPRLGFMPCKSNNNSNKRHILKFLLPSVIIVVGVIATCMYMMMRKKAKQQDRILSAYMEDVLNNRLISYHDIVQATDNFSETNLLGAGSFGQVFKGQLNNGTMVAIKVLSMELEQAMRSFDSECHALRMARHRNLIRILTTCSNLDFRALVLPYMPKGSLETQLHSQGGEQLGFLQRLDILLDVSMAMEYLHYHHCEVVLHCDLKPSNVLFDQDMVALVADFGIAKLLRGDDNSVISASMPGTIGYMAPEYGSVGKASRKRDAFSYGIMLLELFTGKRPTDPMFVGELSLRQWVTSAFPSNVMDVVDNRLLVQDSSSSLNNFIVPVFELGLLCSHELPDQRMTMSDVVVRLTKIKKDYMASV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0213800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g14570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0213800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004780 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004850 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004740 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0061400 | SBH | 4.575236 | 3.059625 | 1.525088 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024800 | SBH | 0.009890 | 0.000000 | 0.012598 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0440500 | SBH | 0.005107 | 0.2015625 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004870 | SBH | 0.024502 | 0.107929 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024040 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004820 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005160 | SBH | 0.184732 | 0.0 | 0.105294 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
