Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0026530 | OGI:03068470 | 4/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:24668985-24672073 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaatattccgttaaatggaaaatcgcacggcactgtgcaggattcgccattgtctctagcatccaagttattccaaattgggttgggacacgacgaggagctcttggaggagcagctaaaatctcttgcatcattgcaataatagcgtcatcctcatcgctcgtgtattgcccttcagtaccatccgaactccacgatgaaccgtcgctcattgtgtgattccttcgaaacaagaaaaatatatagcttacattaaccattacaacattatttgtaaaaaaatgcacgcatggtgttcaataaaaaaattagctgcataaaaaatttcacagtgacataccacaagtaccagttcagactacaagcattagaaatgagtaaagcagatgctaaaaatcatacaacaagatgctaaaatcatacaacaagagggtacaaatcatacaagaaaaaaacagttaagcagatgctaaaatcctactgcaaacagtatggtgagcattattttttatgcctctcatatgaatctcctcctctcagtgagctccaggcaactgaccaagcaagagcaactcaatagaacccattaccatctacgctaccaggacccccacctccaccagggcgacccccctaccaacctccaaaccttgtatgacctcctgaacaagttggcgggggtactcctccaccataaccctgctggccagttggcgggggtgctcctacaccataacgctgctgcccagttcctccttcgtatccaggctgtccacctccttggccaccagctccttttccgccaaattgcttttgccatgtctgtactatgtaatgggaccgtgactcgggtgtagggcagtaatcaatgaaccattgaccccaataagcacgctcaaatacatccagtgccataaagaataaatcactccctgggttatgtccatcagctaccaccaactggatgcaagctgctgcacttctagccctgtcctcttccaccttccgggaacggctctccatcgactccactcgcaaatcagctagccggtgcagggcatcaccggctgagtcacttcgactcttctttgaagccgatcccctcgaagtgccagcttcatctgctggcctcttgccttttcctgcacttgaaactctcctagagtcgcaatgttttgttgttgagctagcagctgtgagatattgatgttgggccttggagttggctgctgaggaggtgctggtgctgcgcctgcaacagcagagtggttccctaccactgtgcgccccgaaaaaatagcacagtgaaggtcgatgtgcttgagaggggaatctttgaagacacgagctccgtcctttttctgcgaaaatggttgagtaacaaaataaatttacattgaaatgaacataagtagtttgttaaatcgattttcatttttgcattttgttgacgctttttgaactaaaaaaaagacagcagcatacaagtacataactaataactaatgtacgcagcaacatagctattattggtggcaccatgttttaacatctgcagactgcaggtaacattttacctagattttacggtctaactaattcaagaaaatggaggaagtactatatgatattgatatgcattgacaataatagcagatgatgagcagactaaaaatcaaaaaactttatgccatgtaagcaatgtgacatgtcacatagaggttgatgtcatgtcaaactatggcatcaacaatagcataggaataccaaatatctcaagatatggctcagttttgttgaaaagacctacaagagaataataaaaatagtaccaaccatgcatttgctgcttcctaatcaatttattggaaggtagtgaatgcagcagagaaattgtacccccattcattatagcaaaaaaaattacattctgattttgtagcctagaaacacaaggttttacaaaggtacataacactttctatgaacaatatgtatgattatacctaaaaatagataactgtggagatttcatgaactaaacaaatgtcatgggtccttgtgttaatgcaaatcagtatggaaatcactatcttcctagttcgaccgaacacaacataagggtaggtgacatacctggtccttgtcttcccaccaattgtcgtcagcaacaatggcttgagttatcgggtcacggccaatgccggtagcctttgattccagccacgtccaaagcatccaccttttacgacattgacaccatatgtacttcacctgatccttggtgaggtttcttccgattctctccttcatcttctgtatgaggttcttgtagccttgcggctttggacaagtggatgttatggtcattgcggacaactcctccaagcatgcctcaagaaatatgccaatttcatcgtcgctccatcggattttaccctccgccatctaccacccaatgttaacaaagcacaaatgcaatggatcAaaaacaaattacaatgggcattaccttttatggcgagatgggccggatcaggtccaaatcgagggaccgaacaaccgtcgccggcgacacacgacggacgaaagagcgaacgccttctggggaggtcgcacaaacggctgttaggaagcgggcggccacattgatgtcattgtcacaaggaggggcagagctagcgtcagatttgccagaggcgctcgatcccgtccccgaatccagattgatgagcagtccgtgaggagccggtgcggcgaacgccaaaggcacagcctgccccttggctgcagtcgacggatggatgtcctcccctctcttccgctttgttcccctggtgcccattgtccacccggagaaggaggcctcaaataggaggccggaggcgagaagaaagcttccaactctgccgaatcttgacgacactgtgacacccgagagcgctccaccgagtacagccgcatgcggccaaagctgcagagcctgatgagcagctaggtgacgcagacaacaccggcagcgctccccgacttccgcctggcttgatggcagctccgccagagaatcccctttctccggcctcgattc
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| CDS seq | atgggcaccaggggaacaaagcggaagagaggggaggacatccatccgtcgactgcagccaaggggcaggctgtgcctttggcgttcgccgcaccggctcctcacggactgctcatcaatctggattcggggacgggatcgagcgcctctggcaaatctgacgctagctctgcccctccttgtgacaatgacatcaatgtggccgcccgcttcctaacagccgtttgtgcgacctccccagaaggcgttcgctctttcgtccgtcgtgtgtcgccggcgacgatggcggagggtaaaatccgatggagcgacgatgaaattggcatatttcttgaggcatgcttggaggagttgtccgcaatgaccataacatccacttgtccaaagccgcaaggctacaagaacctcatacagaagatgaaggagagaatcggaagaaacctcaccaaggatcaggtgaagtacatatggtgtcaatgtcgtaaaaggtggatgctttggacgtggctggaatcaaaggctaccggcattggccgtgacccgataactcaagccattgttgctgacgacaattggtgggaagacaaggaccagaaaaaggacggagctcgtgtcttcaaagattcccctctcaagcacatcgaccttcactgtgctattttttcggggcgcacagtggtagggaaccactctgctgttgcaggcgcagcaccagcacctcctcagcagccaactccaaggcccaacatcaatatctcacagctgctagctcaacaacaaaacattgcgactctaggagagtttcaagtgcaggaaaaggcaagaggccagcagatgaagctggcacttcgaggggatcggcttcaaagaagagtcgaagtgactcagccgtcgatggagagccgttcccggaaggtggaagaggacagggctagaagtgcagcagcttgcatccagttggtggtagctgatggacataacccagggagtgatttattctttatggcactggatgtatttgagcgtgcttattggggtcaatggttcattgattactgccctacacccgagtcacggtcccattacatagtacagacatggcaaaagcaatttggcggaaaaggagctggtggccaaggaggtggacagcctggatacgaaggaggaactgggcagcagcgttatggtgtaggagcacccccgccaactggccagcagggttatggtggaggagtacccccgccaacttgttcaggaggtcatacaaggaatcacacaatgagcgacggttcatcgtggagttcggatggtactgaagggcaatacacgagcgatgaggatgacgctattattgcaatgatgcaagagattttagctgctcctccaagagctcctcgtcgtgtcccaacccaatttggaataacttggatgctagagacaatggcgaatcctgcacagtgccgtgcgattttccatttaacggaatattag
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| Protein seq | MGTRGTKRKRGEDIHPSTAAKGQAVPLAFAAPAPHGLLINLDSGTGSSASGKSDASSAPPCDNDINVAARFLTAVCATSPEGVRSFVRRVSPATMAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYIWCQCRKRWMLWTWLESKATGIGRDPITQAIVADDNWWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTPRPNINISQLLAQQQNIATLGEFQVQEKARGQQMKLALRGDRLQRRVEVTQPSMESRSRKVEEDRARSAAACIQLVVADGHNPGSDLFFMALDVFERAYWGQWFIDYCPTPESRSHYIVQTWQKQFGGKGAGGQGGGQPGYEGGTGQQRYGVGAPPPTGQQGYGGGVPPPTCSGGHTRNHTMSDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVPTQFGITWMLETMANPAQCRAIFHLTEY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0026530 | OsKeNa_03g0026530.01 | Chr03 | 24668985 | 24672073 | - | NAM | ||
| CDS seq | atgggcaccaggggaacaaagcggaagagaggggaggacatccatccgtcgactgcagccaaggggcaggctgtgcctttggcgttcgccgcaccggctcctcacggactgctcatcaatctggattcggggacgggatcgagcgcctctggcaaatctgacgctagctctgcccctccttgtgacaatgacatcaatgtggccgcccgcttcctaacagccgtttgtgcgacctccccagaaggcgttcgctctttcgtccgtcgtgtgtcgccggcgacgatggcggagggtaaaatccgatggagcgacgatgaaattggcatatttcttgaggcatgcttggaggagttgtccgcaatgaccataacatccacttgtccaaagccgcaaggctacaagaacctcatacagaagatgaaggagagaatcggaagaaacctcaccaaggatcaggtgaagtacatatggtgtcaatgtcgtaaaaggtggatgctttggacgtggctggaatcaaaggctaccggcattggccgtgacccgataactcaagccattgttgctgacgacaattggtgggaagacaaggaccagaaaaaggacggagctcgtgtcttcaaagattcccctctcaagcacatcgaccttcactgtgctattttttcggggcgcacagtggtagggaaccactctgctgttgcaggcgcagcaccagcacctcctcagcagccaactccaaggcccaacatcaatatctcacagctgctagctcaacaacaaaacattgcgactctaggagagtttcaagtgcaggaaaaggcaagaggccagcagatgaagctggcacttcgaggggatcggcttcaaagaagagtcgaagtgactcagccgtcgatggagagccgttcccggaaggtggaagaggacagggctagaagtgcagcagcttgcatccagttggtggtagctgatggacataacccagggagtgatttattctttatggcactggatgtatttgagcgtgcttattggggtcaatggttcattgattactgccctacacccgagtcacggtcccattacatagtacagacatggcaaaagcaatttggcggaaaaggagctggtggccaaggaggtggacagcctggatacgaaggaggaactgggcagcagcgttatggtgtaggagcacccccgccaactggccagcagggttatggtggaggagtacccccgccaacttgttcaggaggtcatacaaggaatcacacaatgagcgacggttcatcgtggagttcggatggtactgaagggcaatacacgagcgatgaggatgacgctattattgcaatgatgcaagagattttagctgctcctccaagagctcctcgtcgtgtcccaacccaatttggaataacttggatgctagagacaatggcgaatcctgcacagtgccgtgcgattttccatttaacggaatattag
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| Protein seq | MGTRGTKRKRGEDIHPSTAAKGQAVPLAFAAPAPHGLLINLDSGTGSSASGKSDASSAPPCDNDINVAARFLTAVCATSPEGVRSFVRRVSPATMAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYIWCQCRKRWMLWTWLESKATGIGRDPITQAIVADDNWWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTPRPNINISQLLAQQQNIATLGEFQVQEKARGQQMKLALRGDRLQRRVEVTQPSMESRSRKVEEDRARSAAACIQLVVADGHNPGSDLFFMALDVFERAYWGQWFIDYCPTPESRSHYIVQTWQKQFGGKGAGGQGGGQPGYEGGTGQQRYGVGAPPPTGQQGYGGGVPPPTCSGGHTRNHTMSDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVPTQFGITWMLETMANPAQCRAIFHLTEY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0814800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42510 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0814800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026800 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015800 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026590 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026620 | RBH | 0.000000 | 0.133212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0381700 | RBH | 6.528799 | 17.5907115 | 50.930708 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015200 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0583600 | SBH | 1.3959645 | 3.346691 | 8.195617 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039390 | SBH | 0.0 | 0.216224 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039350 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039010 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015460 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015620 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038870 | SBH | 0.0 | 2.270568 | 1.250060 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024580 | RBH | 0.0 | 0.0 | 0.0 |
