Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g42510 | OGI:03068460 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:23647892-23651394 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACAGGTTCTCCACCGAATTGGCAATGGCATCACGGTATGCTTTCATCGCTTGTGCGCTATTGCCGGCGTAATACATATTGGAGAAGGGGGGTGCTATTGGTGCTATAGGATTACCATTATACAGAGGGTTATTGGCCTGGAAGTCATTTTGCTTGCTGTCGATTCGGAAGTTGTGCAAACAAAACGCTGCCAATATTATGTCGCTCTGGACATTCTTGTATGGGTTGTACGGTATGCCTTTTAAGATTTTCCACTGTTTTTTCACAATTCCAAATTGCCTCTCAATTATATTACGCAGCTTGGCATGTATGTAGTTGAACTTCTCTTCCCTTCCTTCTGGCGGTGGAGCGCGTGGCCCCTTGAATTGATCCTTGTGGTATCGTACACGTGGGTACGGTGCCAGGAAGCCCATCCTACTCGGATATCCGGAGTCAACAAGAAGATATTTTCCTACAAAATAAAGTTATACATGAAAACTATCAGTGCACAATTAATGAAGTGCTATATGGTGTACAAATGTAGTACTTACGAAAAGGTAGTCTTGGAAACTCCTCTGGATAAGAGTCAATAGCTTCGTTTAGGACTCGATTATCATGCACTGATCCTAGCCATCCGGCATCGGCAAATATAACTCTACCATCGAATCCAACAATTGTTAGGACATTTTTTGTTGTCTCGTCATGGCGATTCATGTGTTCTATGGCACTATCCACACCAACAGTGACCGGAATGTGTGTGCCGTCAACAGCACCTACAGCAAACTGGAATGGTCCAAAACGACTATCTTGTAATAGGCGACGAGGGATGTCCGTAAAATTCGGATCAATTGGCTTGAGTATTTTCGACCCTAACATAACCATTCGGCTAAGAACCCTTCGAAAATAGATAGACACCGTCGAGTTCGACCGGACCCAACGATTGTTCGACTCCCTTGAAGAATTATTTCCTGCCATTGTGAACAAGAAGATTCCTAGTGCCTCCAAAGAACTTACATCATTACTCCCATGCAGGTTGTAAGGGGCATTTTCCAAAATTCCATGTAGAGTGTATATCTAATATTCCGTTAAATGGAAAATCGCACGGCACTGTGCAGGATTCGCCATTGTCTCTAGCATCCAAGTTATTCCAAATTGGGTTGGGACACGACGAGGAGCTCTTGGAGGAGCAGCTAAAATCTCTTGCATCATTGCAATAATAGCGTCATCCTCATCGCTCGTGTATTGCCCTTCAGTACCATCCGAACTCCACGATGAACCGTCGCTCATTGTGTGATTCCTTCGAAACAAGAAAAATATATAGCTTACATTAACCATTACAACATTATTTGTAAAAAAATGCACGCATGGTGTTCAATAAAAAAATTAGCTGCATAAAAAATTTCACAGTGACATACCACAAGTACCAGTTCAGACTACAAGCATTAGAAATGAGTAAAGCAGATGCTAAAAATCATACAACAAGATGCTAAAATCATACAACAAGAGGGTACAAATCATACAAGAAAAAAACAGTTAAGCAGATGCTAAAATCCTACTGCAAACAGTATGGTGAGCATTATTTTTTATGCCTCTCATATGAATCTCCTCCTCTCAGTGAGCTCCAGGCAACTGACCAAGCAAGAGCAACTCAATAGAACCCATTACCATCTACGCTACCAGGACCCCCACCTCCACCAGGGCGACCCCCCTACCAACCTCCAAACCTTGTATGACCTCCTGAACAAGTTGGCGGGGGTACTCCTCCACCATAACCCTGCTGGCCAGTTGGCGGGGGTGCTCCTACACCATAACGCTGCTGCCCAGTTCCTCCTTCGTATCCAGGCTGTCCACCTCCTTGGCCACCAGCTCCTTTTCCGCCAAATTGCTTTTGCCATGTCTGTACTATGTAATGGGACCGTGACTCGGGTGTAGGGCAGTAATCAATGAACCATTGACCCCAATAAGCACGCTCAAATACATCCAGTGCCATAAAGAATAAATCACTCCCTGGGTTATGTCCATCAGCTACCACCAACTGGATGCAAGCTGCTGCACTTCTAGCCCTGTCCTCTTCCACCTTCCGGGAACGGCTCTCCATCGACTCCACTCGCAAATCAGCTAGCCGGTGCAGGGCATCACCGGCTGAGTCACTTCGACTCTTCTTTGAAGCCGATCCCCTCGAAGTGCCAGCTTCATCTGCTGGCCTCTTGCCTTTTCCTGCACTTGAAACTCTCCTAGAGTCGCAATGTTTTGTTGTTGAGCTAGCAGCTGTGAGATATTGATGTTGGGCCTTGGAGTTGGCTGCTGAGGAGGTGCTGGTGCTGCGCCTGCAACAGCAGAGTGGTTCCCTACCACTGTGCGCCCCGAAAAAATAGCACAGTGAAGGTCGATGTGCTTGAGAGGGGAATCTTTGAAGACACGAGCTCCGTCCTTTTTCTGCGAAAATGGTTGAGTAACAAAATAAATTTACATTGAAATGAACATAAGTAGTTTGTTAAATCGATTTTCATTTTTGCATTTTGTTGACGCTTTTTGAACTAAAAAAAAGACAGCAGCATACAAGTACATAACTAATAACTAATGTACGCAGCAACATAGCTATTATTGGTGGCACCATGTTTTAACATCTGCAGACTGCAGGTAACATTTTACCTAGATTTTACGGTCTAACTAATTCAAGAAAATGGAGGAAGTACTATATGATATTGATATGCATTGACAATAATAGCAGATGATGAGCAGACTAAAAATCAAAAAACTTTATGCCATGTAAGCAATGTGACATGTCACATAGAGGTTGATGTCATGTCAAACTATGGCATCAACAATAGCATAGGAATACCAAATATCTCAAGATATGGCTCAGTTTTGTTGAAAAGACCTACAAGAGAATAATAAAAATAGTACCAACCATGCATTTGCTGCTTCCTAATCAATTTATTGGAAGGTAGTGAATGCAGCAGAGAAATTGTACCCCCATTCATTATAGCAAAAAAAATTACATTCTGATTTTGTAGCCTAGAAACACAAGGTTTTACAAAGGTACATAACACTTTCTATGAACAATATGTATGATTATACCTAAAAATAGATAACTGTGGAGATTTCATGAACTAAACAAATGTCATGGGTCCTTGTGTTAATGCAAATCAGTATGGAAATCACTATCTTCCTAGTTCGACCGAACACAACATAAGGGTAGGTGACATACCTGGTCCTTGTCTTCCCACCAATTGTCGTCAGCAACAATGGCTTGAGTTATCGGGTCACGGCCAATGCCGGTAGCCTTTGATTCCAGCCACGTCCAAAGCATCCACCTTTTACGACATTGACACCATATGTACTTCACCTGATCCTTGGTGAGGTTTCTTCCGATTCTCTCCTTCATCTTCTGTATGAGGTTCTTGTAGCCTTGCGGCTTTGGACAAGTGGATGTTATGGTCATTGCGGACAACTCCTCCAAGCATGCCTCAAGAAATATGCCAATTTCATCGTCGCTCCATCGGATTTTACCCTCCGCCAT
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| CDS seq | ATGGCGGAGGGTAAAATCCGATGGAGCGACGATGAAATTGGCATATTTCTTGAGGCATGCTTGGAGGAGTTGTCCGCAATGACCATAACATCCACTTGTCCAAAGCCGCAAGGCTACAAGAACCTCATACAGAAGATGAAGGAGAGAATCGGAAGAAACCTCACCAAGGATCAGGTGAAGTACATATGGTGTCAATGTCGTAAAAGGTGGATGCTTTGGACGTGGCTGGAATCAAAGGCTACCGGCATTGGCCGTGACCCGATAACTCAAGCCATTGTTGCTGACGACAATTGGTGGGAAGACAAGGACCAGAAAAAGGACGGAGCTCGTGTCTTCAAAGATTCCCCTCTCAAGCACATCGACCTTCACTGTGCTATTTTTTCGGGGCGCACAGTGGTAGGGAACCACTCTGCTGTTGCAGGCGCAGCACCAGCACCTCCTCAGCAGCCAACTCCAAGGCCCAACATCAATATCTCACAGCTGCTAGCTCAACAACAAAACATTGCGACTCTAGGAGAGTTTCAAGTGCAGGAAAAGGCAAGAGGCCAGCAGATGAAGCTGGCACTTCGAGGGGATCGGCTTCAAAGAAGAGTCGAAGTGACTCAGCCGTCGATGGAGAGCCGTTCCCGGAAGGTGGAAGAGGACAGGGCTAGAAGTGCAGCAGCTTGCATCCAGTTGGTGGTAGCTGATGGACATAACCCAGGGAGTGATTTATTCTTTATGGCACTGGATGTATTTGAGCGTGCTTATTGGGGTCAATGGTTCATTGATTACTGCCCTACACCCGAGTCACGGTCCCATTACATAGTACAGACATGGCAAAAGCAATTTGGCGGAAAAGGAGCTGGTGGCCAAGGAGGTGGACAGCCTGGATACGAAGGAGGAACTGGGCAGCAGCGTTATGGTGTAGGAGCACCCCCGCCAACTGGCCAGCAGGGTTATGGTGGAGGAGTACCCCCGCCAACTTGTTCAGGAGGTCATACAAGGTTTGGAGCATCTGCTTTACTCATTTCTAATGCTTGTAGTCTGAACTGGTACTTGTGGAATCACACAATGAGCGACGGTTCATCGTGGAGTTCGGATGGTACTGAAGGGCAATACACGAGCGATGAGGATGACGCTATTATTGCAATGATGCAAGAGATTTTAGCTGCTCCTCCAAGAGCTCCTCGTCGTGTCCCAACCCAATTTGGAATAACTTGGATGCTAGAGACAATGGCGAATCCTGCACAGTGCCGAAATAATTCTTCAAGGGAGTCGAACAATCGTTGGGTCCGGTCGAACTCGACGGTGTCTATCTATTTTCGAAGGGTTCTTAGCCGAATGGTTATGTTAGGGTCGAAAATACTCAAGCCAATTGATCCGAATTTTACGGACATCCCTCGTCGCCTATTACAAGATAGTCGTTTTGGACCATTCCAGTTTGCTGTAGGTGCTGTTGACGGCACACACATTCCGGTCACTGTTGGTGTGGATAGTGCCATAGAACACATGAATCGCCATGACGAGACAACAAAAAATGTCCTAACAATTGTTGGATTCGATGGTAGAGTTATATTTGCCGATGCCGGATGGCTAGGATCAGTGCATGATAATCGAGTCCTAAACGAAGCTATTGACTCTTATCCAGAGGAGTTTCCAAGACTACCTTTTCGAAAATATCTTCTTGTTGACTCCGGATATCCGAGTAGGATGGGCTTCCTGGCACCGTACCCACGTGTACGATACCACAAGGATCAATTCAAGGGGCCACGCGCTCCACCGCCAGAAGGAAGGGAAGAGAAGTTCAACTACATACATGCCAAGCTGCGTAATATAATTGAGAGGCAATTTGGAATTGTGAAAAAACAGTGGAAAATCTTAAAAGGCATACCGTACAACCCATACAAGAATGTCCAGAGCGACATAATATTGGCAGCGTTTTGTTTGCACAACTTCCGAATCGACAGCAAGCAAAATGACTTCCAGGCCAATAACCCTCTGTATAATGGTAATCCTATAGCACCAATAGCACCCCCCTTCTCCAATATGTATTACGCCGGCAATAGCGCACAAGCGATGAAAGCATACCGTGATGCCATTGCCAATTCGGTGGAGAACCTGTAG
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| Protein seq | MAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYIWCQCRKRWMLWTWLESKATGIGRDPITQAIVADDNWWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTPRPNINISQLLAQQQNIATLGEFQVQEKARGQQMKLALRGDRLQRRVEVTQPSMESRSRKVEEDRARSAAACIQLVVADGHNPGSDLFFMALDVFERAYWGQWFIDYCPTPESRSHYIVQTWQKQFGGKGAGGQGGGQPGYEGGTGQQRYGVGAPPPTGQQGYGGGVPPPTCSGGHTRFGASALLISNACSLNWYLWNHTMSDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVPTQFGITWMLETMANPAQCRNNSSRESNNRWVRSNSTVSIYFRRVLSRMVMLGSKILKPIDPNFTDIPRRLLQDSRFGPFQFAVGAVDGTHIPVTVGVDSAIEHMNRHDETTKNVLTIVGFDGRVIFADAGWLGSVHDNRVLNEAIDSYPEEFPRLPFRKYLLVDSGYPSRMGFLAPYPRVRYHKDQFKGPRAPPPEGREEKFNYIHAKLRNIIERQFGIVKKQWKILKGIPYNPYKNVQSDIILAAFCLHNFRIDSKQNDFQANNPLYNGNPIAPIAPPFSNMYYAGNSAQAMKAYRDAIANSVENL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g42510 | LOC_Os03g42510.1 | Chr03 | 23647892 | 23651394 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGAGGGTAAAATCCGATGGAGCGACGATGAAATTGGCATATTTCTTGAGGCATGCTTGGAGGAGTTGTCCGCAATGACCATAACATCCACTTGTCCAAAGCCGCAAGGCTACAAGAACCTCATACAGAAGATGAAGGAGAGAATCGGAAGAAACCTCACCAAGGATCAGGTGAAGTACATATGGTGTCAATGTCGTAAAAGGTGGATGCTTTGGACGTGGCTGGAATCAAAGGCTACCGGCATTGGCCGTGACCCGATAACTCAAGCCATTGTTGCTGACGACAATTGGTGGGAAGACAAGGACCAGAAAAAGGACGGAGCTCGTGTCTTCAAAGATTCCCCTCTCAAGCACATCGACCTTCACTGTGCTATTTTTTCGGGGCGCACAGTGGTAGGGAACCACTCTGCTGTTGCAGGCGCAGCACCAGCACCTCCTCAGCAGCCAACTCCAAGGCCCAACATCAATATCTCACAGCTGCTAGCTCAACAACAAAACATTGCGACTCTAGGAGAGTTTCAAGTGCAGGAAAAGGCAAGAGGCCAGCAGATGAAGCTGGCACTTCGAGGGGATCGGCTTCAAAGAAGAGTCGAAGTGACTCAGCCGTCGATGGAGAGCCGTTCCCGGAAGGTGGAAGAGGACAGGGCTAGAAGTGCAGCAGCTTGCATCCAGTTGGTGGTAGCTGATGGACATAACCCAGGGAGTGATTTATTCTTTATGGCACTGGATGTATTTGAGCGTGCTTATTGGGGTCAATGGTTCATTGATTACTGCCCTACACCCGAGTCACGGTCCCATTACATAGTACAGACATGGCAAAAGCAATTTGGCGGAAAAGGAGCTGGTGGCCAAGGAGGTGGACAGCCTGGATACGAAGGAGGAACTGGGCAGCAGCGTTATGGTGTAGGAGCACCCCCGCCAACTGGCCAGCAGGGTTATGGTGGAGGAGTACCCCCGCCAACTTGTTCAGGAGGTCATACAAGGTTTGGAGCATCTGCTTTACTCATTTCTAATGCTTGTAGTCTGAACTGGTACTTGTGGAATCACACAATGAGCGACGGTTCATCGTGGAGTTCGGATGGTACTGAAGGGCAATACACGAGCGATGAGGATGACGCTATTATTGCAATGATGCAAGAGATTTTAGCTGCTCCTCCAAGAGCTCCTCGTCGTGTCCCAACCCAATTTGGAATAACTTGGATGCTAGAGACAATGGCGAATCCTGCACAGTGCCGAAATAATTCTTCAAGGGAGTCGAACAATCGTTGGGTCCGGTCGAACTCGACGGTGTCTATCTATTTTCGAAGGGTTCTTAGCCGAATGGTTATGTTAGGGTCGAAAATACTCAAGCCAATTGATCCGAATTTTACGGACATCCCTCGTCGCCTATTACAAGATAGTCGTTTTGGACCATTCCAGTTTGCTGTAGGTGCTGTTGACGGCACACACATTCCGGTCACTGTTGGTGTGGATAGTGCCATAGAACACATGAATCGCCATGACGAGACAACAAAAAATGTCCTAACAATTGTTGGATTCGATGGTAGAGTTATATTTGCCGATGCCGGATGGCTAGGATCAGTGCATGATAATCGAGTCCTAAACGAAGCTATTGACTCTTATCCAGAGGAGTTTCCAAGACTACCTTTTCGAAAATATCTTCTTGTTGACTCCGGATATCCGAGTAGGATGGGCTTCCTGGCACCGTACCCACGTGTACGATACCACAAGGATCAATTCAAGGGGCCACGCGCTCCACCGCCAGAAGGAAGGGAAGAGAAGTTCAACTACATACATGCCAAGCTGCGTAATATAATTGAGAGGCAATTTGGAATTGTGAAAAAACAGTGGAAAATCTTAAAAGGCATACCGTACAACCCATACAAGAATGTCCAGAGCGACATAATATTGGCAGCGTTTTGTTTGCACAACTTCCGAATCGACAGCAAGCAAAATGACTTCCAGGCCAATAACCCTCTGTATAATGGTAATCCTATAGCACCAATAGCACCCCCCTTCTCCAATATGTATTACGCCGGCAATAGCGCACAAGCGATGAAAGCATACCGTGATGCCATTGCCAATTCGGTGGAGAACCTGTAG
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| Protein seq | MAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYIWCQCRKRWMLWTWLESKATGIGRDPITQAIVADDNWWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTPRPNINISQLLAQQQNIATLGEFQVQEKARGQQMKLALRGDRLQRRVEVTQPSMESRSRKVEEDRARSAAACIQLVVADGHNPGSDLFFMALDVFERAYWGQWFIDYCPTPESRSHYIVQTWQKQFGGKGAGGQGGGQPGYEGGTGQQRYGVGAPPPTGQQGYGGGVPPPTCSGGHTRFGASALLISNACSLNWYLWNHTMSDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVPTQFGITWMLETMANPAQCRNNSSRESNNRWVRSNSTVSIYFRRVLSRMVMLGSKILKPIDPNFTDIPRRLLQDSRFGPFQFAVGAVDGTHIPVTVGVDSAIEHMNRHDETTKNVLTIVGFDGRVIFADAGWLGSVHDNRVLNEAIDSYPEEFPRLPFRKYLLVDSGYPSRMGFLAPYPRVRYHKDQFKGPRAPPPEGREEKFNYIHAKLRNIIERQFGIVKKQWKILKGIPYNPYKNVQSDIILAAFCLHNFRIDSKQNDFQANNPLYNGNPIAPIAPPFSNMYYAGNSAQAMKAYRDAIANSVENL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g05570 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026790 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026520 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026580 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026610 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039070 | SBH | 0.0 | 2.610758 | 3.985822 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0457500 | SBH | 0 | 0.043764 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038830 | SBH | 0.068602 | 0.293620 | 0.382407 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0423100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039390 | SBH | 0.0 | 0.216224 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039350 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039010 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039030 | SBH | 0.0 | 1.240051 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039130 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038870 | SBH | 0.0 | 2.270568 | 1.250060 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024580 | SBH | 0.0 | 0.0 | 0.0 |
