Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0814800 | OGI:03095350 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:34144737-34145271 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATCTCCAATACCTCCAACACCACAACTTTGTACCATCCTCGACATCGTCCATGGAGCCAAAAAGAATGGTTAGCTCGTCCTCATGTGCAAGCGGCTTGTGACGGAACTGTTTGGCTTCTCTATCCTCCTACAGGGCAGATATGGGTGAAATGTAAGCTTTACGAAAAAAACAACAAAAGCTAATGTGGGCTTAAGTGTGGATAACAAGAATATGAAGTAATTACCTCGATACGGTCTTCCCACCAATCATCATCACATCTTATGGTGCCGGTATTGTTGTCCCACCCGGCTCCACTCTTGTTCTTTAGTTTCTTCCATAAGCTGTGTTGCCTCTTTAGGGTGTTAAACTTGTTTTGGAGCTGCTTGCTGTCATAATTTTTGCATGTTTGTTCTCGGAAATTGCGATATACATTCTGCCAGCCTACCTTGGTCAGCCCCTTCTTGTTGTAGTTCAGCTTTTCCTTCTCGGCAATGCAGATGTCAAGGAATATCTTTGTAAGGCGATCATCCCAATAGGCGTGCCCTCCACCCAT
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| CDS seq | ATGGGTGGAGGGCACGCCTATTGGGATGATCGCCTTACAAAGATATTCCTTGACATCTGCATTGCCGAGAAGGAAAAGCTGAACTACAACAAGAAGGGGCTGACCAAGGTAGGCTGGCAGAATGTATATCGCAATTTCCGAGAACAAACATGCAAAAATTATGACAGCAAGCAGCTCCAAAACAAGTTTAACACCCTAAAGAGGCAACACAGCTTATGGAAGAAACTAAAGAACAAGAGTGGAGCCGGGTGGGACAACAATACCGGCACCATAAGATGTGATGATGATTGGTGGGAAGACCGTATCGAGGAGGATAGAGAAGCCAAACAGTTCCGTCACAAGCCGCTTGCACATGAGGACGAGCTAACCATTCTTTTTGGCTCCATGGACGATGTCGAGGATGGTACAAAGTTGTGGTGTTGGAGGTATTGGAGATAG
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| Protein seq | MGGGHAYWDDRLTKIFLDICIAEKEKLNYNKKGLTKVGWQNVYRNFREQTCKNYDSKQLQNKFNTLKRQHSLWKKLKNKSGAGWDNNTGTIRCDDDWWEDRIEEDREAKQFRHKPLAHEDELTILFGSMDDVEDGTKLWCWRYWR |
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| Function | L10-interacting MYB domain-containing protein [UniProtKB/Swiss-Prot:Q9FFJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0814800 | Os03t0814800-00 | Chr03 | 34144737 | 34145271 | - | irgsp1_rep | ||
| CDS seq | ATGGGTGGAGGGCACGCCTATTGGGATGATCGCCTTACAAAGATATTCCTTGACATCTGCATTGCCGAGAAGGAAAAGCTGAACTACAACAAGAAGGGGCTGACCAAGGTAGGCTGGCAGAATGTATATCGCAATTTCCGAGAACAAACATGCAAAAATTATGACAGCAAGCAGCTCCAAAACAAGTTTAACACCCTAAAGAGGCAACACAGCTTATGGAAGAAACTAAAGAACAAGAGTGGAGCCGGGTGGGACAACAATACCGGCACCATAAGATGTGATGATGATTGGTGGGAAGACCGTATCGAGGAGGATAGAGAAGCCAAACAGTTCCGTCACAAGCCGCTTGCACATGAGGACGAGCTAACCATTCTTTTTGGCTCCATGGACGATGTCGAGGATGGTACAAAGTTGTGGTGTTGGAGGTATTGGAGATAG
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| Protein seq | MGGGHAYWDDRLTKIFLDICIAEKEKLNYNKKGLTKVGWQNVYRNFREQTCKNYDSKQLQNKFNTLKRQHSLWKKLKNKSGAGWDNNTGTIRCDDDWWEDRIEEDREAKQFRHKPLAHEDELTILFGSMDDVEDGTKLWCWRYWR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0814800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60030 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039530 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0039200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039260 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039070 | RBH | 0.0 | 2.610758 | 3.985822 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0581700 | RBH | 0.9537395 | 3.4476765 | 11.9246575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038830 | RBH | 0.068602 | 0.293620 | 0.382407 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0583600 | RBH | 1.3959645 | 3.346691 | 8.195617 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039390 | RBH | 0.0 | 0.216224 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039010 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039030 | RBH | 0.0 | 1.240051 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038870 | RBH | 0.0 | 2.270568 | 1.250060 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038630 | RBH | 0.0 | 7.200456 | 2.655759 |
