Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0026620 | OGI:03068470 | 4/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:25119997-25123085 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATATTCCGTTAAATAGAAAATCGCACGGCACTGTGCAGGATTCGCCATTGTCTCTAGCATCCAAGTTATTCCAAATTGGGTTGGGACACGACGAGGAGCTCTTGGAGGAGCAGCTAAAATCTCTTGCATCATTGCAATAATAGCGTCATCCTCATCGCTCGTGTATTGCCCTTCAGTACCATCCGAACTCCACGATGAACCGTCGCTCATTGTGTGATTCCTTCGAAACAAGAAAAATATATAGCTTACATTAACCATTACAACATTATTTGTAAAAAAATGCACGCATGGTGTTCAATAAAAAAATTAGCTGCATAAAAAATTTCACAGTGACATACCACAAGTACCAGTTCAGACTACAAGCATTAGAAATGAGTAAAGCAGATGCTAAAAATCATACAACAAGATGCTAAAATCATACAACAAGAGGGTACAAATCATACAAGAAAAAAACAGTTAAGCAGATGCTAAAATCCTACTGCAAACAGTATGGTGAGCATTATTTTTTATGCCTCTCATATGAATCTCCTCCTCTCAGTGAGCTCCAGGCAACTGACCAAGCAAGAGCAACTCAATAGAACCCATTACCATCTACGCTACCAGGACCCCCACCTCCACCAGGGCGACCCCCCTACCAACCTCCAAACCTTGTATGACCTCCTGAACAAGTTGGCGGGGGTACTCCTCCACCATAACCCTGCTGGCCAGTTGGCGGGGGTGCTCCTACACCATAACGCTGCTGCCCAGTTCCTCCTTCGTATCCAGGCTGTCCACCTCCTTGGCCACCAGCTCCTTTTCCGCCAAATTGCTTTTGCCATGTCTGTACTATGTAATGGGACCGTGACTCGGGTGTAGGGCAGTAATCAATGAACCATTGACCCCAATAAGCACGCTCAAATACATCCAGTGCCATAAAGAATAAATCACTCCCTGGGTTATGTCCATCAGCTACCACCAACTGGATGCAAGCTGCTGCACTTCTAGCCCTGTCCTCTTCCACCTTCCGGGAACGGCTCTCCATCGACTCCACTCGCAAATCAGCTAGCCGGTGCAGGGCATCACCGGCTGAGTCACTTCGACTCTTCTTTGAAGCCGATCCCCTCGAAGTGCCAGCTTCATCTGCTGGCCTCTTGCCTTTTCCTGCACTTGAAACTCTCCTAGAGTCGCAATGTTTTGTTGTTGAGCTAGCAGCTGTGAGATATTGATGTTGGGCCTTGGAGTTGGCTGCTGAGGAGGTGCTGGTGCTGCGCCTGCAACAGCAGAGTGGTTCCCTACCACTGTGCGCCCCGAAAAAATAGCACAGTGAAGGTCGATGTGCTTGAGAGGGGAATCTTTGAAGACACGAGCTCCGTCCTTTTTCTGCGAAAATGGTTGAGTAACAAAATAAATTTACATTGAAATGAACATAAGTAGTTTGTTAAATCGATTTTCATTTTTGCATTTTGTTGACGCTTTTTGAACTAAAAAAAAGACAGCAGCATACAAGTACATAACTAATAACTAATGTACGCAGCAACATAGCTATTATTGGTGGCACCATGTTTTAACATCTGCAGACTGCAGGTAACATTTTACCTAGATTTTACGGTCTAACTAATTCAAGAAAATGGAGGAAGTACTATATGATATTGATATGCATTGACAATAATAGCAGATGATGAGCAGACTAAAAATCAAAAAACTTTATGCCATGTAAGCAATGTGACATGTCACATAGAGGTTGATGTCATGTCAAACTATGGCATCAACAATAGCATAGGAATACCAAATATCTCAAGATATGGCTCAGTTTTGTTGAAAAGACCTACAAGAGAATAATAAAAATAGTACCAACCATGCATTTGCTGCTTCCTAATCAATTTATTGGAAGGTAGTGAATGCAGCAGAGAAATTGTACCCCCATTCATTATAGCAAAAAAAATTACATTCTGATTTTGTAGCCTAGAAACACAAGGTTTTACAAAGGTACATAACACTTTCTATGAACAATATGTATGATTATACCTAAAAATAGATAACTGTGGAGATTTCATGAACTAAACAAATGTCATGGGTCCTTGTGTTAATGCAAATCAGTATGGAAATCACTATCTTCCTAGTTCGACCGAACACAACATAAGGGTAGGTGACATACCTGGTCCTTGTCTTCCCACCAATTGTCGTCAGCAACAATGGCTTGAGTTATCGGGTCACGGCCAATGCCGGTAGCCTTTGATTCCAGCCACGTCCAAAGCATCCACCTTTTACGACATTGACACCATATGTACTTCACCTGATCCTTGGTGAGGTTTCTTCCGATTCTCTCCTTCATCTTCTGTATGAGGTTCTTGTAGCCTTGCGGCTTTGGACAAGTGGATGTTATGGTCATTGCGGACAACTCCTCCAAGCATGCCTCAAGAAATATGCCAATTTCATCGTCGCTCCATCGGATTTTACCCTCCGCCATCTACCACCCAATGTTAACAAAGCACAAATGCAATGGATCAAAAACAAATTACAATGGGCATTACCTTTTATGGCGAGATGGGCCGGATCAGGTCCAAATCGAGGGACCGAACAACCGTCGCCGGCGACACACGACGGACGAAAGAGCGAACGCCTTCTGGGGAGGTCGCACAAACGGCTGTTAGGAAGCGGGCGGCCACATTGATGTCATTGTCACAAGGAGGGGCAGAGCTAGCGTCAGATTTGCCAGAGGCGCTCGATCCCGTCCCCGAATCCAGATTGATGAGCAGTCCGTGAGGAGCCGGTGCGGCGAACGCCAAAGGCACAGCCTGCCCCTTGGCTGCAGTCGACGGATGGATGTCCTCCCCTCTCTTCCGCTTTGTTCCCCTGGTGCCCATTGTCCACCCGGAGAAGGAGGCCTCAAATAGGAGGCCGGAGGCGAGAAGAAAGCTTCCAACTCTGCCGAATCTTGACGACACTGTGACACCCGAGAGCGCTCCACCGAGTACAGCCGCATGCGGCCAAAGCTGCAGAGCCTGATGAGCAGCTAGGTGACGCAGACAACACCGGCAGCGCTCCCCGACTTCCGCCTGGCTTGATGGCAGCTCCGCCAGAGAATCCCCTTTCTCCGGCCTCGATTC
More
|
||||||||||
| CDS seq | ATGGGCACCAGGGGAACAAAGCGGAAGAGAGGGGAGGACATCCATCCGTCGACTGCAGCCAAGGGGCAGGCTGTGCCTTTGGCGTTCGCCGCACCGGCTCCTCACGGACTGCTCATCAATCTGGATTCGGGGACGGGATCGAGCGCCTCTGGCAAATCTGACGCTAGCTCTGCCCCTCCTTGTGACAATGACATCAATGTGGCCGCCCGCTTCCTAACAGCCGTTTGTGCGACCTCCCCAGAAGGCGTTCGCTCTTTCGTCCGTCGTGTGTCGCCGGCGACGATGGCGGAGGGTAAAATCCGATGGAGCGACGATGAAATTGGCATATTTCTTGAGGCATGCTTGGAGGAGTTGTCCGCAATGACCATAACATCCACTTGTCCAAAGCCGCAAGGCTACAAGAACCTCATACAGAAGATGAAGGAGAGAATCGGAAGAAACCTCACCAAGGATCAGGTGAAGTACATATGGTGTCAATGTCGTAAAAGGTGGATGCTTTGGACGTGGCTGGAATCAAAGGCTACCGGCATTGGCCGTGACCCGATAACTCAAGCCATTGTTGCTGACGACAATTGGTGGGAAGACAAGGACCAGAAAAAGGACGGAGCTCGTGTCTTCAAAGATTCCCCTCTCAAGCACATCGACCTTCACTGTGCTATTTTTTCGGGGCGCACAGTGGTAGGGAACCACTCTGCTGTTGCAGGCGCAGCACCAGCACCTCCTCAGCAGCCAACTCCAAGGCCCAACATCAATATCTCACAGCTGCTAGCTCAACAACAAAACATTGCGACTCTAGGAGAGTTTCAAGTGCAGGAAAAGGCAAGAGGCCAGCAGATGAAGCTGGCACTTCGAGGGGATCGGCTTCAAAGAAGAGTCGAAGTGACTCAGCCGTCGATGGAGAGCCGTTCCCGGAAGGTGGAAGAGGACAGGGCTAGAAGTGCAGCAGCTTGCATCCAGTTGGTGGTAGCTGATGGACATAACCCAGGGAGTGATTTATTCTTTATGGCACTGGATGTATTTGAGCGTGCTTATTGGGGTCAATGGTTCATTGATTACTGCCCTACACCCGAGTCACGGTCCCATTACATAGTACAGACATGGCAAAAGCAATTTGGCGGAAAAGGAGCTGGTGGCCAAGGAGGTGGACAGCCTGGATACGAAGGAGGAACTGGGCAGCAGCGTTATGGTGTAGGAGCACCCCCGCCAACTGGCCAGCAGGGTTATGGTGGAGGAGTACCCCCGCCAACTTGTTCAGGAGGTCATACAAGGAATCACACAATGAGCGACGGTTCATCGTGGAGTTCGGATGGTACTGAAGGGCAATACACGAGCGATGAGGATGACGCTATTATTGCAATGATGCAAGAGATTTTAGCTGCTCCTCCAAGAGCTCCTCGTCGTGTCCCAACCCAATTTGGAATAACTTGGATGCTAGAGACAATGGCGAATCCTGCACAGTGCCGTGCGATTTTCTATTTAACGGAATATTAG
More
|
||||||||||
| Protein seq | MGTRGTKRKRGEDIHPSTAAKGQAVPLAFAAPAPHGLLINLDSGTGSSASGKSDASSAPPCDNDINVAARFLTAVCATSPEGVRSFVRRVSPATMAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYIWCQCRKRWMLWTWLESKATGIGRDPITQAIVADDNWWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTPRPNINISQLLAQQQNIATLGEFQVQEKARGQQMKLALRGDRLQRRVEVTQPSMESRSRKVEEDRARSAAACIQLVVADGHNPGSDLFFMALDVFERAYWGQWFIDYCPTPESRSHYIVQTWQKQFGGKGAGGQGGGQPGYEGGTGQQRYGVGAPPPTGQQGYGGGVPPPTCSGGHTRNHTMSDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVPTQFGITWMLETMANPAQCRAIFYLTEY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0026620 | OsARC_03g0026620.01 | Chr03 | 25119997 | 25123085 | - | NAM | ||
| CDS seq | ATGGGCACCAGGGGAACAAAGCGGAAGAGAGGGGAGGACATCCATCCGTCGACTGCAGCCAAGGGGCAGGCTGTGCCTTTGGCGTTCGCCGCACCGGCTCCTCACGGACTGCTCATCAATCTGGATTCGGGGACGGGATCGAGCGCCTCTGGCAAATCTGACGCTAGCTCTGCCCCTCCTTGTGACAATGACATCAATGTGGCCGCCCGCTTCCTAACAGCCGTTTGTGCGACCTCCCCAGAAGGCGTTCGCTCTTTCGTCCGTCGTGTGTCGCCGGCGACGATGGCGGAGGGTAAAATCCGATGGAGCGACGATGAAATTGGCATATTTCTTGAGGCATGCTTGGAGGAGTTGTCCGCAATGACCATAACATCCACTTGTCCAAAGCCGCAAGGCTACAAGAACCTCATACAGAAGATGAAGGAGAGAATCGGAAGAAACCTCACCAAGGATCAGGTGAAGTACATATGGTGTCAATGTCGTAAAAGGTGGATGCTTTGGACGTGGCTGGAATCAAAGGCTACCGGCATTGGCCGTGACCCGATAACTCAAGCCATTGTTGCTGACGACAATTGGTGGGAAGACAAGGACCAGAAAAAGGACGGAGCTCGTGTCTTCAAAGATTCCCCTCTCAAGCACATCGACCTTCACTGTGCTATTTTTTCGGGGCGCACAGTGGTAGGGAACCACTCTGCTGTTGCAGGCGCAGCACCAGCACCTCCTCAGCAGCCAACTCCAAGGCCCAACATCAATATCTCACAGCTGCTAGCTCAACAACAAAACATTGCGACTCTAGGAGAGTTTCAAGTGCAGGAAAAGGCAAGAGGCCAGCAGATGAAGCTGGCACTTCGAGGGGATCGGCTTCAAAGAAGAGTCGAAGTGACTCAGCCGTCGATGGAGAGCCGTTCCCGGAAGGTGGAAGAGGACAGGGCTAGAAGTGCAGCAGCTTGCATCCAGTTGGTGGTAGCTGATGGACATAACCCAGGGAGTGATTTATTCTTTATGGCACTGGATGTATTTGAGCGTGCTTATTGGGGTCAATGGTTCATTGATTACTGCCCTACACCCGAGTCACGGTCCCATTACATAGTACAGACATGGCAAAAGCAATTTGGCGGAAAAGGAGCTGGTGGCCAAGGAGGTGGACAGCCTGGATACGAAGGAGGAACTGGGCAGCAGCGTTATGGTGTAGGAGCACCCCCGCCAACTGGCCAGCAGGGTTATGGTGGAGGAGTACCCCCGCCAACTTGTTCAGGAGGTCATACAAGGAATCACACAATGAGCGACGGTTCATCGTGGAGTTCGGATGGTACTGAAGGGCAATACACGAGCGATGAGGATGACGCTATTATTGCAATGATGCAAGAGATTTTAGCTGCTCCTCCAAGAGCTCCTCGTCGTGTCCCAACCCAATTTGGAATAACTTGGATGCTAGAGACAATGGCGAATCCTGCACAGTGCCGTGCGATTTTCTATTTAACGGAATATTAG
More
|
|||||||
| Protein seq | MGTRGTKRKRGEDIHPSTAAKGQAVPLAFAAPAPHGLLINLDSGTGSSASGKSDASSAPPCDNDINVAARFLTAVCATSPEGVRSFVRRVSPATMAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYIWCQCRKRWMLWTWLESKATGIGRDPITQAIVADDNWWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTPRPNINISQLLAQQQNIATLGEFQVQEKARGQQMKLALRGDRLQRRVEVTQPSMESRSRKVEEDRARSAAACIQLVVADGHNPGSDLFFMALDVFERAYWGQWFIDYCPTPESRSHYIVQTWQKQFGGKGAGGQGGGQPGYEGGTGQQRYGVGAPPPTGQQGYGGGVPPPTCSGGHTRNHTMSDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVPTQFGITWMLETMANPAQCRAIFYLTEY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.133212 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42510 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026800 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026530 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026590 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015490 | RBH | 0.074953 | 0.065806 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0457400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015200 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0423100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039390 | SBH | 0.0 | 0.216224 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039350 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015460 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015620 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038870 | SBH | 0.0 | 2.270568 | 1.250060 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024580 | SBH | 0.0 | 0.0 | 0.0 |
