Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_03g0012110 OGI:03023930 | 15/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr03:9118955-9122352
Gene Symbol -
DNA seq

cagcccccttaatagttttaatttcaacacaagcaaatctgattccaaagtccggtggcgggtgtactcgttcatttgttactgcccccatttccaatataatacaacagtgaaccgaatgtacacgtacaacaatgttgactatagttgattgtaactctacaaatgatcgttacttgctgtaagctctgccttttgtgtgtaggcaggtaaggggggaaaataatcggtcatccaaaattactggatcgttgcatatgtttcttgtttcattttcattaagttgctctctatgcctcttaacacaggtctatatctgcataagtgatggcaacagttaaatttcaccaaacagaggggaaaataaaatgcagaatcggacaaacaataatagtatacttacaggcgtgcgaggttattctgcgcttgcaccgcttttctgagttcagctgaaagtttcattatttctgccgacaacccctcggatctgctctgttctttgatgagctgatcctgtagacaatgaaatatgcagttgtaaaccaatgacatgacaataaatagatttgactagtcatggtatagacaagaaaatattctcgacagctccagcaatcaacctttagggagagattctcagttacaaactctggcgggaatgaaatgctggtctcgttctgcccatctggctggatagtggtattacttgttttcaatagagtagcttgctcaagtcttaacttctctaagtgagagcgtagctcttcattttgcttgagacaatcttttacctggaaattgtgattaattgaacacgcaagatgctggtatcatccataaatgataaatgtttgtctctccatgcatgaaatgactgataacagcacacctggttttcccattgcattgtaacagctacagcttcttggtatgaagtagacaaggctgagttctcctcaaacagcttttctatttctgatgattgagaatcaatctgtcaaacacaatccaaaacttagccagctcattgggaacttattttgttcaaagaaaaggaaggcagcatcaaacacctccattaacaacttttggcggctgccctctagcctctcaaccatcaaagccatatcatgcaattggctttcaagtttttccctatcttcctgcataattaaaaaatggccagtacagtttaagattgattcgagcccagcaagaagattacggcgaacacttagcattacaagtttctaatcacccctgaaaattttgaattaagacaagggcattcaggcttacaggtgtccacctagcctgttgtaatgcaagatctcatctcagttttacttttgagtccttgataactatggactaacacatgaagtatttaccttggcaaaatcttaactcatggaaaaacaaaaaacttgaagtttgttcgatacattaccattgaaaatgccttgcgtgcagcaaattcagaagcttcatctgcatggtaggggaaacttatttcatgcagtttaccagtaaaatatggaatatctgaaggaacggaaagcagagcagcatgacaaatgtggaagtaaaagactatgctgaatggcacgtttactagagatagagtaccctatatgaagctacaaaatatgtttcatatgcacctgatgctttcttcgtcaaggcagcaattttttcttccaactctttcttttccgcaaccaaggaagcagcatgagactgttctccagttagcttttgttgctcttgttgccttaatagggactcttcagaaagtttctgttgctcctgctgccttagcaatgattcttgctgcattaaccattttatatgttagtttgcttagatagaataatcaataataaggacaagcataacactgaagcaagacaaaatgacctaccttcagctgagcctgcaaattttctacctccttttccatagcaagaatgtgctcatttgatacaccaactggaaatccagtataagagttgctcattacttgctgctgcagggtatttaactgtgctctcaatgatgcagagtcctcttctgcctgtaaatcataagattagcacactaatgatatgactaaggatgcacaatttttcaaaataccctgtattgctcctcttctgcctccttcagtcgtttcttcatgctccttagttgtgcgagagcatcctcctacttagcataccaggtagaagtgataatggggattagacatatcagaatcgtgaataccataaacacgaagacagtcaagtaccttagcaacagctgcggcatctttctccaaagaaatgtcattcacagcctttttcaaggagggtactatattccgctcctgcaaacagcgaattaatccccaaagtaaaacgcgtgcaaaatgtaagccatatgcatcaaactgcaacacaagtaccaaattaaaatgcacaatatgaaactcacaaggtcgttcaagcggttaacgagggaatccttctcgacttccttctcagcaatctagacgaagctatgctttgttaatactacttcatccttcaggtaactgtaccacaacaatactgaactgcagagaaaataccttggataacagcatttggttttccctctccaatgctatgttcccattttcaagttctctaactcgaccaagaagctaccattcataccaaaagccttagttatagtctagaaacaacatgagaatttggatacgtacttgccacgatcaatgttcatccgaactattcgacacaaaggaaaggggggcaaacctcagctccggctcctgggttccctacagaaaacaatcgccattaagcccacaagattagcactgaactacgaactgttccaggggaagagagggatggaccaaccgtaagggtcgacaagggacgccgcggcggccgggttgtgctgctgctgcatcctctcggcggctctcttctgccggatctcctccagctgccagacaaacgcgcacacaaaccccaacacaaatttgagcctcaaatcccagatacaaacgagacgcggatctgaaacgcctcgcgtcacagagaagcaggagggagaggagaggagaggcatacggtgcggcgcccccgcgaggcgtgattggcttccatctccggcgaccggccgacgaaccggtcggctttctggaagctcgggatccggaggcgcgacgcgaaggaggatggccgatggcgggggctcctccggtatcgcctcgatcctgtgatgcccggagaagagaaggggaagaaacccaaactcgtgggcctagccaacgtgttggccttctagagttcacaagccggcccgtacgagcccgatcgggcaggttattcagtaccccc

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CDS seq

atggaagccaatcacgcctcgcgggggcgccgcaccctggaggagatccggcagaagagagccgccgagaggatgcagcagcagcacaacccggccgccgcggcgtcccttgtcgacccttacgggaacccaggagccggagctgagcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcatgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcataccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagagaagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MEANHASRGRRTLEEIRQKRAAERMQQQHNPAAAASLVDPYGNPGAGAELLGRVRELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSHAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSYQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0012110 OsKeNa_03g0012110.01 Chr03 9118955 9122352 - NAM
CDS seq

atgaacattgatcgtggcaaagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcatgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcataccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagagaagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MNIDRGKELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSHAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSYQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0012110 OsKeNa_03g0012110.03 Chr03 9118955 9122352 - NAM
CDS seq

atggaagccaatcacgcctcgcgggggcgccgcaccctggaggagatccggcagaagagagccgccgagaggatgcagcagcagcacaacccggccgccgcggcgtcccttgtcgacccttacggagccggagctgagcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcatgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcataccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagagaagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MEANHASRGRRTLEEIRQKRAAERMQQQHNPAAAASLVDPYGAGAELLGRVRELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSHAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSYQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0012110 OsKeNa_03g0012110.02 Chr03 9118955 9122352 - NAM
CDS seq

atgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcatgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcataccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagagaagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSHAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSYQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0012110 OsKeNa_03g0012110.04 Chr03 9118955 9122352 - NAM
CDS seq

atggaagccaatcacgcctcgcgggggcgccgcaccctggaggagatccggcagaagagagccgccgagaggatgcagcagcagcacaacccggccgccgcggcgtcccttgtcgacccttacgggaacccaggagccggagctgagcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcatgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcataccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagagaagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MEANHASRGRRTLEEIRQKRAAERMQQQHNPAAAASLVDPYGNPGAGAELLGRVRELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSHAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSYQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr03 9121775 9121867 - OsKeNa_03g0012110.01,OsKeNa_03g0012110.04 OsKeNa_03g0012110.04,OsKeNa_03g0012110.01,OsKeNa_03g0012110.03 All
RI Chr03 9121762 9121954 - OsKeNa_03g0012110.02 OsKeNa_03g0012110.02,OsKeNa_03g0012110.03 All
RI Chr03 9121762 9121954 - OsKeNa_03g0012110.02 OsKeNa_03g0012110.02,OsKeNa_03g0012110.04 All

Expression

Leaf Root Panicle
FPKM 0.271310 2.510860 3.537359

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0268100 RBH 1.863191 3.299580 4.152690
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g16120 RBH 1.139460 2.070731 0.971619
Nipponbare | IRGSP 1.0 | RAP-db Os03g0268100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0012280 RBH 0.987327 2.770998 9.213886
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0012130 RBH 1.326301 14.269515 8.897238
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0012080 RBH 0.017639 0.442867 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0011960 RBH 10.796139 1.816466 16.108459
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0150400 RBH 5.3292135 11.9536435 24.6678675
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0011860 RBH 0.265680 1.306938 1.411816
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0151800 RBH 7.4919275 12.342806 15.7954365
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0011990 RBH 0.449252 0.042357 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0012060 RBH 1.521585 1.589186 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0012060 RBH 7.127318 19.021690 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0012000 RBH 1.031113 1.717305 1.343534
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0011940 RBH 0.310219 5.830701 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G011910 RBH 0.966715 7.029445 3.432235
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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