Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_03g0012060 OGI:03023930 | 15/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr03:9325050-9328449
Gene Symbol -
DNA seq

aacagcccccttaatagttttaatttcaacacaagcaaatctgattccaaagtccgctggcgggtgtactcgttcatttgttactgcccccatttccaatataatacaacagtgaaccgaatgtacacgtacaacaatgttgactatagttgattgtaactctacaaatgatcgttacttgctgtaagctctgccttttgtgtgtaggcaggtaaggggggaaaataatcggtcatccaaaattactggatcgttgcatatgtttcttgtttcattttcattaagttgctctctatgcctcttaacacaggtctatatctgcataagtgatggcaacagttaaatttcaccaaacagaggggaaaataaaatgcagaatcggacaaacaataatagtatacttacaggcgtgcgaggttattctgcgcttgcaccgcttttctgagttcagctgaaagtttcattatttctgccgacaacccctcggatctgctctgttctttgatgagctgatcctgtagacaatgaaatatgcagttgtaaaccaatgacatgacaataaatagatttgactagtcatggtatagacaagaaaatattctcgacagctccagcaatcaacctttagggagagattctcagttacaaactctggcgggaatgaaatgctggtctcgttctgcccatctggctggatagtggtattacttgttttcaatagagtagcttgctcaagtcttaactTCtctaagtgagagcgtagctcttcattttgcttgagacaatcttttacctggaaattgtgattaattgaacacgcaagatgctggtatcatccataaatgataaatgtttgtctctccatgcatgaaatgactgataacagcacacctggttttcccattgcattgtaacagctacagcttcttggTgtgaagtagacaaggctgagttctcctcaaacagcttttctatttctgatgattgagaatcaatctgtcaaacacaatccaaaacttagccagctcattgggaacttattttgttcaaagaaaaggaaggcagcatcaaacacctccattaacaacttttggcggctgccctctagcctctcaaccatcaaagccatatcatgcaattggctttcaagtttttccctatcttcctgcataattaaaaaatggccagtacagtttaagattgattcgagcccagcaagaagattacggtgaacacttagcattacaagtttctaatcacccctgaaaattttgaattaagacaagggcattcaggcttacaggtgtccacctagcctgttgtaatgcaagatctcatctcagttttacttttgagtccttgataactatggactaacacatgaagtatttaccttggcaaaatcttaactcatggaaaaacaaaaaacttgaagtttgttcgatacattaccattgaaaatgccttgcgtgcagcaaattcagaagcttcatctgcatggtaggggaaacttatttcatgcagtttaccagtaaaatatggaatatctgaaggaacggaaagcagagcagcatgacaaatgtggaagtaaaagactatgctgaatggcacgtttactagagatagagtaccctatatgaagctacaaaatatgtttcatatgcacctgatgctttcttcgtcaaggcagcaattttttcttccaactctttcttttccgcaaccaaggaagcagcacgagactgttctccagttagcttttgttgctcttgttgccttaatagggactcttcagaaagtttctgttgctcctgctgccttagcaatgattcttgctgcattaaccattttatatgttagtttgcttagatagaataatcaataataaggacaagcaaaacactgaagcaagacaaaatgacctaccttcagctgagcctgcaaattttctacctccttttccatagcaagaatgtgctcatttgatacaccaactggaaatccagtataagagttgctcattacttgctgctgcagggtatttaactgtgctctcaatgatgcagagtcctcttctgcctgtaaatcataagattagcacactaatgatatgactaaggatgcacaatttttcaaaataCcctgtattgctcctcttctgcctccttcagtcgtttcttcatgctccttagttgtgcgagagcatcctcctacttagcataccaggtagaagtgataatggggattagacatatcagaatcgtgaataccataaacacgaagacagtcaagtaccttagcaacagctgcggcatctttctccaaagaaatgtcattcacagcctttttcaaggagggtactatattccgctcctgcaaacagcgaattaatccccaaagtaaaacgcgtgcaaaatgtaagccatatgcatcaaactgcaacacaagtaccaaattaaaatgcacaatatgaaactcacaaggtcgttcaagcggttaacgagggaatccttctcgacttccttctcagcaatctagacgaagctatgctttgttaatactacttcatccttcaggtaactgtaccacaacaatactgaactgcagagaaaataccttggataacagcatttggttttccctctccaatgctatgttcccattttcaagttctctaactcgaccaagaagctaccattcataccaaaagccttagttatagtctagaaacaacatgagaatttggatacgtacttgccacgatcaatgttcatccgaactattcgacacaaaggaaaggggggcaaacctcagctccggctcctgggttccctacagaaaacaatcgccattaagcccacaagattagcactgaactacgaactgttccaggggaagagagggatggaccaaccgtaagggtcgacaagggacgccgcggcggccgggttgtgctgctgctgcatcctctcggcggctctcttctgccggatctcctccagctgccagacaaacgcgcacacaaaccccaacacaaatttgagcctcaaatcccagatacaaacgagacgcggatctgaaacgcctcgcgtcacagagaagcaggagggagaggagaggagaggcatacggtgcggcgcccccgcgaggcgtgattggcttccatctccggcgaccggccgacgaaccggtcggctttctggaagctcgggatccggaggcgcgacgcgaaggaggatggccgatggcgggggctcctccggtatcgcctcgatcctgtgatgcccggagaagagaaggggaagaaacccaaactcgtgggcctagccaacgtgttggccttctagagttcacaagccggcccgtacgagcccgatcgggcaggttattcagtaccccc

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CDS seq

atggaagccaatcacgcctcgcgggggcgccgcaccctggaggagatccggcagaagagagccgccgagaggatgcagcagcagcacaacccggccgccgcggcgtcccttgtcgacccttacgggaacccaggagccggagctgagcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcgtgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcacAccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagaGAagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MEANHASRGRRTLEEIRQKRAAERMQQQHNPAAAASLVDPYGNPGAGAELLGRVRELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSRAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSHQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_03g0012060 OsGoSa_03g0012060.03 Chr03 9325050 9328348 - NAM
CDS seq

atggaagccaatcacgcctcgcgggggcgccgcaccctggaggagatccggcagaagagagccgccgagaggatgcagcagcagcacaacccggccgccgcggcgtcccttgtcgacccttacggagccggagctgagcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcgtgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcacAccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagaGAagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MEANHASRGRRTLEEIRQKRAAERMQQQHNPAAAASLVDPYGAGAELLGRVRELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSRAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSHQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

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Gene Transcript Chromosome Start End Strand Source
OsGoSa_03g0012060 OsGoSa_03g0012060.02 Chr03 9325050 9328449 - NAM
CDS seq

atgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcgtgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcacAccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagaGAagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSRAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSHQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

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Gene Transcript Chromosome Start End Strand Source
OsGoSa_03g0012060 OsGoSa_03g0012060.04 Chr03 9325050 9328313 - NAM
CDS seq

atgaacattgatcgtggcaaagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcgtgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcacAccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagaGAagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MNIDRGKELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSRAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSHQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

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Gene Transcript Chromosome Start End Strand Source
OsGoSa_03g0012060 OsGoSa_03g0012060.01 Chr03 9325050 9328449 - NAM
CDS seq

atggaagccaatcacgcctcgcgggggcgccgcaccctggaggagatccggcagaagagagccgccgagaggatgcagcagcagcacaacccggccgccgcggcgtcccttgtcgacccttacgggaacccaggagccggagctgagcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgttatccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgaccttgagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagatgccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagaggagcaatacagggcagaagaggactctgcatcattgagagcacagttaaataccctgcagcagcaagtaatgagcaactcttatactggatttccagttggtgtatcaaatgagcacattcttgctatggaaaaggaggtagaaaatttgcaggctcagctgaagcaagaatcattgctaaggcagcaggagcaacagaaactttctgaagagtccctattaaggcaacaagagcaacaaaagctaactggagaacagtctcgtgctgcttccttggttgcggaaaagaaagagttggaagaaaaaattgctgccttgacgaagaaagcatcagatgaagcttctgaatttgctgcacgcaaggcattttcaatggaagatagggaaaaacttgaaagccaattgcatgatatggctttgatggttgagaggctagagggcagccgccaaaagttgttaatggagattgattctcaatcatcagaaatagaaaagctgtttgaggagaactcagccttgtctacttcacAccaagaagctgtagctgttacaatgcaatgggaaaaccaggtaaaagattgtctcaagcaaaatgaagagctacgctctcacttagaGAagttaagacttgagcaagctactctattgaaaacaagtaataccactatccagccagatgggcagaacgagaccagcatttcattcccgccagagtttgtaactgagaatctctccctaaaggatcagctcatcaaagaacagagcagatccgaggggttgtcggcagaaataatgaaactttcagctgaactcagaaaagcggtgcaagcgcagaataacctcgcacgcctatatagacctgtgttaagaggcatagagagcaacttaatgaaaatgaaacaagaaacatatgcaacgatccagtaa

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Protein seq

MEANHASRGRRTLEEIRQKRAAERMQQQHNPAAAASLVDPYGNPGAGAELLGRVRELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVNDISLEKDAAAVAKEDALAQLRSMKKRLKEAEEEQYRAEEDSASLRAQLNTLQQQVMSNSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLLRQQEQQKLSEESLLRQQEQQKLTGEQSRAASLVAEKKELEEKIAALTKKASDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGSRQKLLMEIDSQSSEIEKLFEENSALSTSHQEAVAVTMQWENQVKDCLKQNEELRSHLEKLRLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLSAELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATIQ

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OsGoSa_03g0012060.04OsGoSa_03g0012060.03OsGoSa_03g0012060.02OsGoSa_03g0012060.01AS9325000 bp9325500 bp9326000 bp9326500 bp9327000 bp9327500 bp9328000 bp9328500 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr03 9327872 9327964 - OsGoSa_03g0012060.04,OsGoSa_03g0012060.01 OsGoSa_03g0012060.01,OsGoSa_03g0012060.03,OsGoSa_03g0012060.04 All
RI Chr03 9327859 9328051 - OsGoSa_03g0012060.02 OsGoSa_03g0012060.02,OsGoSa_03g0012060.03 All
RI Chr03 9327859 9328051 - OsGoSa_03g0012060.02 OsGoSa_03g0012060.02,OsGoSa_03g0012060.01 All

Expression

Leaf Root Panicle
FPKM 7.127318 19.021690 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0268100 RBH 1.863191 3.299580 4.152690
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g16120 RBH 1.139460 2.070731 0.971619
Nipponbare | IRGSP 1.0 | RAP-db Os03g0268100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0012280 RBH 0.987327 2.770998 9.213886
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0012110 RBH 0.271310 2.510860 3.537359
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0012130 RBH 1.326301 14.269515 8.897238
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0012080 RBH 0.017639 0.442867 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0011960 RBH 10.796139 1.816466 16.108459
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0150400 RBH 5.3292135 11.9536435 24.6678675
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0011860 RBH 0.265680 1.306938 1.411816
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0151800 RBH 7.4919275 12.342806 15.7954365
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0011990 RBH 0.449252 0.042357 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0012060 RBH 1.521585 1.589186 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0012000 RBH 1.031113 1.717305 1.343534
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0011940 RBH 0.310219 5.830701 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G011910 RBH 0.966715 7.029445 3.432235
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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