Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0030830 | OGI:01044490 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:29616997-29618301 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaaggacatctattgttatcttgacgttgggtgccttgtagaagtgaaagatgcaaactgaatggagatgaatggcattggttgctgcaaaagttgcccatcctctctttaggttgcaacgatcgtccgatgatttatgcaggagcatggtgactgaatcactgcctgctgcttcaacctgaacgaagatagtttttttgcgtcccatgagtggctgaatgtaggtcactgaatattccttggtaaagtactgcaattggaactgcatgttatttttttagggaatgcatgaatagaccaatgtttgtctagtgtaagtatacttaccagtctatcttgcttcatgaatgtattgttcatagtcacaatatagaacttgctggaacgctggaggaactgcccgatgatgctgatgtagtttttaatgtcaggtgtgactgctgtattccttgcacaaaaacagagatcgtcgaagctatgtgtggtttcgcctgtgagcacacattgtttataagattgctatgtttaattggaaagaagtcatgaaataggtaaatatggctataaattctgttagtagacaattaattatatcatgattgttgatatgctaatagtgactcggatttgttctctgtactggtaggcttgtgtgataaaatctctgtggccagaatgcggatactgatgtggtgattttagaaggaaaagaactgagttatatgtgaacagatgaaaggcttacctgaattgtcggagctggaaggaatgtcagtcatcgactctgtccttgaatctgacgaagtctctgaaagatggtgttgaaatatgtcattagtgtgattggctatagatttgtacatataggtatatatcatggagcacaggattgtagacaaatatttgtgcacctttgtttgatgtgtgtgaaatgagcatggaagcatgcttgctggtaggcatgtcattgatagtgattcctgtcgatctctttggtgctgtcttgatttgtttcttggatgaagggatcatgggcagcttgctatcttttttcttgtcaaagagaaggacatttatctttgatggagtaagaacttgaaagcgaatgtattgaccagacagtaagccagtacggtgaacaaaggttttccacccttttgagatgaagaatgatcctgcaattttttctagttcgacggtcattggtggtgcgtgcggtgaaagcaatgttacagtctgtccatggtgtgcatggcagcctcgagcaatattgttcggcagccgctgttgtgaggcacaatgt
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| CDS seq | atgaccgtcgaactagaaaaaattgcaggatcattcttcatctcaaaagggtggaaaacctttgttcaccgtactggcttactgtctggtcaatacattcgctttcaagttcttactccatcaaagataaatgtccttctctttgacaagaaaaaagatagcaagctgcccatgatcccttcatccaagaaacaaatcaagacagcaccaaagagatcgacaggaatcactatcaatgacatgcctaccagcaagcatgcttccatgctcatttcacacacatcaaacaaagagacttcgtcagattcaaggacagagtcgatgactgacattccttccagctccgacaattcaggcgaaaccacacatagcttcgacgatctctgtttttgtgcaaggaatacagcagtcacacctgacattaaaaactacatcagcatcatcgggcagttcctccagcgttccagcaagttctatattgtgactatgaacaatacattcatgaagcaagatagactggttgaagcagcaggcagtgattcagtcaccatgctcctgcataaatcatcggacgatcgttgcaacctaaagagaggatgggcaacttttgcagcaaccaatgccattcatctccattcagtttgcatctttcacttctacaaggcacccaacgtcaagataacaatagatgtcctttaa
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| Protein seq | MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTHSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKAPNVKITIDVL |
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| Function | Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0030830 | OsKeNa_02g0030830.01 | Chr02 | 29616997 | 29618301 | - | NAM | ||
| CDS seq | atgaccgtcgaactagaaaaaattgcaggatcattcttcatctcaaaagggtggaaaacctttgttcaccgtactggcttactgtctggtcaatacattcgctttcaagttcttactccatcaaagataaatgtccttctctttgacaagaaaaaagatagcaagctgcccatgatcccttcatccaagaaacaaatcaagacagcaccaaagagatcgacaggaatcactatcaatgacatgcctaccagcaagcatgcttccatgctcatttcacacacatcaaacaaagagacttcgtcagattcaaggacagagtcgatgactgacattccttccagctccgacaattcaggcgaaaccacacatagcttcgacgatctctgtttttgtgcaaggaatacagcagtcacacctgacattaaaaactacatcagcatcatcgggcagttcctccagcgttccagcaagttctatattgtgactatgaacaatacattcatgaagcaagatagactggttgaagcagcaggcagtgattcagtcaccatgctcctgcataaatcatcggacgatcgttgcaacctaaagagaggatgggcaacttttgcagcaaccaatgccattcatctccattcagtttgcatctttcacttctacaaggcacccaacgtcaagataacaatagatgtcctttaa
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| Protein seq | MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTHSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKAPNVKITIDVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0242900 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13900 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0242900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030740 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008650 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030710 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030290 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0015380 | SBH | 3.522644 | 17.653049 | 22.338383 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015170 | SBH | 0.276571 | 0.787004 | 2.877324 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0582500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015730 | SBH | 0.086728 | 0.171850 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015600 | SBH | 0.214543 | 2.018135 | 2.009358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008670 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030760 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030530 | RBH | 0.0 | 0.0 | 0.000000 |
