Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0009680 | OGI:02021410 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:7260639-7263980 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaactcaatgatcttccttttccccttccccccaacctcctcccacaacccggttttcactacgctgtacagtagaagtagaaaacgttacatccaactacataatttacagcgactcgtgtagttgccacgtcagctttaaaccggatgcgccacgaagctgccgctttcctcgtcgccggcgccggcgccccacattttcccggccgtcgttcccgccgacgagctcttccctttcccgtctttcttccccttggagaacgacggcgcgccgccggagttgtcacggcacgcggcggccacgctggacgtgcggtcgtactggaccagctgctcgagcacctccttcatcgtcggccgcgacgtcgggacttcgccggtgcagatcatgccgagcaggaacaccgccacggcgtcctccaggaacgccgccctgtcctggatgctctcgtcgacgacgtcgtgcagctcgccgccggccttgtacctccgccacgcccactccgccaggcaccagtccgcgccgccgtcgttcgccacccgccccgtcgtcagctccagcagcacgacgccgaacgcgtacacgtccaccttctcgttcaccttcgctctgcacccgtactctgcgaccgcgagacagacatatcgtcgaacacttgactctcatgagctagctcgatcgatggcgagcaaaatcaaatcaaacgaatcaatcttgtgatgaactcacctggagccatgtagccgaaggtgccgccgatggcggagatggaattcggctcgccggacttgacgaggatcctggcgaggccgaagtcggcgatcttggcgcggaaggccgggtcgagcaggatgttgctggacttgacgtcgcggtgcatgatcggctgcgcgcactcgtggtgcatgtagctgagccccctcgccgcgtcgatggcgatgcacagccgcgtcggccactggagcggcgccgtcggcgcgccgccgtcgtcgcggcggtgcagccaccggtcgaggctgccgttctccatgtactcgtagacgagcagcttggtgtcgtcgccggagatgcagcagaggaggtcgatgatgttgatgtggcgtacctccccgaggatcctcacctcggcgtcgaactccttgtcgctcttcgcgtccgacttggccgccgtccgccatagccgcttcaccgccaccaccttgccggcgctgcccttgccgccgatgttgatgcggtacaccttgccggagccgccgctgccgatcacgttgtcctcgtggagattgccgagcacatcacactcggagaagtctagagtacggaacggcgtcatcttccacccggcgagatcctgccgccgcttctggtgccggagcatcagcaaccggatggccacggcgccaatgaacaagacgccggcgagcaccgagaagacggtgatcaggctcatggacaacttgttacggactccattgccacttccacacggcggaaggttcatggccatgtccgtggtggcacataggccgtggttgccaaggaagctacggtcgtaggcgccgttttgcagcgtctccgggacctcaccggagagctggttggaagagaggttgagagagttgagatgaagattgttgaattcttgaggtatgtcgccGgtgagctcgttgtcggagaggtcaagcatggttaggtccatccacccgagggcggaggggatctcaccggaaatccggtttctactaaggttgagggcggtcagcattgtcaatgatttgatagacgacgaaatcgagccggatagccggttgccagcgaggatcagctcggtgaggttggcgagcctcgacatgtcatccggtagtgctccggagaactggttgttctccgccttgaagctctttagtgcgatggcggcggatgggagcgcaccggagaatagattgttcccaatctcaatcctagtgatgttaggtgatatctcacttggtagagtgccggtgaattcgttgttgtaaatcatgacattggtgagcagtgcaaatgaccatatcttctttgggaaatccccgacaaagtggttgttgtatgccatgacattgttgatggtttcgcaatccccgaggttcgccgggaacacgccggagaagctattgttgaacaccacaaggtcatagaactttttgttgaaacagagcgtatcaggcaactcaccagataggttgttgttcgacacctcaaaattccccaattctgaatattttcctagctctggtggtagggaaccagagagcatgttattgaagagacgaatgtcggttaggtttggtagcaaaccgacacctgtcgggatgggtccagtgaggttgttgtagtacaagtatagcaagctcaagttcttcatatttgcaatgtcttctggtattggtccggtgagcttattcatggacagatcaagctgctgcaggttgagagctgtgatgtccgggccaatcccaccagtgaacttgtttgcaaagaggtacagttgctcaagcttttcgagcttccatatccacttagggatttctccttgcatcttgttaactgatatgtccaataatgtaagctccgtcaatgttgatagagcatcagggatggccccagtaaggttcataaatgacaaccacaaatacgtcagctttgttagcttgctgaactcgtcgggaattggacccggtttgaacggattggacgccagcgttagcatctcaagctccacaaggcctccaatggcggcacccgggtaattcccgttgaagcgattagtgtcaagtaccaacgacttgagcttcgagaaccttccaatagccgatggcacatcgccaacaaaagcattgctcgacaggttgaggtgcagcatccccgatgacagcttgtcgatgtcaccgggaagtctaccggataattgattgttggataggtcaaggaactccaaagctgagcaaccgtagagcaccgtggggaaatcactggtgagattgttgaaagagaggtctatgtaggtcaggttcttgaggctacaaacggaggctgggattggtctggctatatggaaacttgggaaggagaggccagtgacctgtcctgtgatattgttgtagataacgccagtccagttgccgGTgctgctccatgaactgagtggagctgggttgtcccaatcttgcttgattgctaggagtagtgtttgctcgttggcgctgggctgcgccgccgatagagagaagagcaatagtagtagaaagaggatgaggatgttgtagacagccattttttgcgagtgtggtgtgttcttggat
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| CDS seq | atggctgtctacaacatcctcatcctctttctactactattgctcttctctctatcggcggcgcagcccagcgccaacgagcaaacactactcctagcaatcaagcaagattgggacaacccagctccactcagttcatggagcagcACcggcaactggactggcgttatctacaacaatatcacaggacaggtcactggcctctccttcccaagtttccatatagccagaccaatcccagcctccgtttgtagcctcaagaacctgacctacatagacctctctttcaacaatctcaccagtgatttccccacggtgctctacggttgctcagctttggagttccttgacctatccaacaatcaattatccggtagacttcccggtgacatcgacaagctgtcatcggggatgctgcacctcaacctgtcgagcaatgcttttgttggcgatgtgccatcggctattggaaggttctcgaagctcaagtcgttggtacttgacactaatcgcttcaacgggaattacccgggtgccgccattggaggccttgtggagcttgagatgctaacgctggcgtccaatccgttcaaaccgggtccaattcccgacgagttcagcaagctaacaaagctgacgtatttgtggttgtcatttatgaaccttactggggccatccctgatgctctatcaacattgacggagcttacattattggacatatcagttaacaagatgcaaggagaaatccctaagtggatatggaagctcgaaaagcttgagcaactgtacctctttgcaaacaagttcactggtgggattggcccggacatcacagctctcaacctgcagcagcttgatctgtccatgaataagctcaccggaccaataccagaagacattgcaaatatgaagaacttgagcttgctatacttgtactacaacaacctcactggacccatcccgacaggtgtcggtttgctaccaaacctaaccgacattcgtctcttcaataacatgctctctggttccctaccaccagagctaggaaaatattcagaattggggaattttgaggtgtcgaacaacaacctatctggtgagttgcctgatacgctctgtttcaacaaaaagttctatgaccttgtggtgttcaacaatagcttctccggcgtgttcccggcgaacctcggggattgcgaaaccatcaacaatgtcatggcatacaacaaccactttgtcggggatttcccaaagaagatatggtcatttgcactgctcaccaatgtcatgatttacaacaacgaattcaccggcactctaccaagtgagatatcacctaacatcactaggattgagattgggaacaatctattctccggtgcgctcccatccgccgccatcgcactaaagagcttcaaggcggagaacaaccagttctccggagcactaccggatgacatgtcgaggctcgccaacctcaccgagctgatcctcgctggcaaccggctatccggctcgatttcgtccctgatcaccgtcttctcggtgctcgccggcgtcttgttcattggcgccgtggccatccggttgctgatgctccggcaccagaagcggcggcaggatctcgccgggtggaagatgacgccgttccgtactctagacttctccgagtgtgatgtgctcggcaatctccacgaggacaacgtgatcggcagcggcggctccggcaaggtgtaccgcatcaacatcggcggcaagggcagcgccggcaaggtggtggcggtgaagcggctatggcggacggcggccaagtcggacgcgaagagcgacaaggagttcgacgccgaggtgaggatcctcggggaggtacgccacatcaacatcatcgacctcctctgctgcatctccggcgacgacaccaagctgctcgtctacgagtacatggagaacggcagcctcgaccgagcgaaggtgaacgagaaggtggacgtgtacgcgttcggcgtcgtgctgctggagctgacgacggggcgggtggcgaacgacggcggcgcggactggtgcctggcggagtgggcgtggcggaggtacaaggccggcggcgagctgcacgacgtcgtcgacgagagcatccaggacagggcggcgttcctggaggacgccgtggcggtgttcctgctcggcatgatctgcaccggcgaagtcccgacgtcgcggccgacgatgaaggaggtgctcgagcagctggtccagtacgaccgcacgtccagcgtggccgccgcgtgccgtgacaactccggcggcgcgccgtcgttctccaaggggaagaaagacgggaaagggaagagctcgtcggcgggaacgacggccgggaaaatgtggggcgccggcgccggcgacgaggaaagcggcagcttcgtggcgcatccggtttaa
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| Protein seq | MAVYNILILFLLLLLFSLSAAQPSANEQTLLLAIKQDWDNPAPLSSWSSTGNWTGVIYNNITGQVTGLSFPSFHIARPIPASVCSLKNLTYIDLSFNNLTSDFPTVLYGCSALEFLDLSNNQLSGRLPGDIDKLSSGMLHLNLSSNAFVGDVPSAIGRFSKLKSLVLDTNRFNGNYPGAAIGGLVELEMLTLASNPFKPGPIPDEFSKLTKLTYLWLSFMNLTGAIPDALSTLTELTLLDISVNKMQGEIPKWIWKLEKLEQLYLFANKFTGGIGPDITALNLQQLDLSMNKLTGPIPEDIANMKNLSLLYLYYNNLTGPIPTGVGLLPNLTDIRLFNNMLSGSLPPELGKYSELGNFEVSNNNLSGELPDTLCFNKKFYDLVVFNNSFSGVFPANLGDCETINNVMAYNNHFVGDFPKKIWSFALLTNVMIYNNEFTGTLPSEISPNITRIEIGNNLFSGALPSAAIALKSFKAENNQFSGALPDDMSRLANLTELILAGNRLSGSISSLITVFSVLAGVLFIGAVAIRLLMLRHQKRRQDLAGWKMTPFRTLDFSECDVLGNLHEDNVIGSGGSGKVYRINIGGKGSAGKVVAVKRLWRTAAKSDAKSDKEFDAEVRILGEVRHINIIDLLCCISGDDTKLLVYEYMENGSLDRAKVNEKVDVYAFGVVLLELTTGRVANDGGADWCLAEWAWRRYKAGGELHDVVDESIQDRAAFLEDAVAVFLLGMICTGEVPTSRPTMKEVLEQLVQYDRTSSVAAACRDNSGGAPSFSKGKKDGKGKSSSAGTTAGKMWGAGAGDEESGSFVAHPV |
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| Function | Receptor-like protein kinase HSL1 [UniProtKB/Swiss-Prot:Q9SGP2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0009680 | OsKeNa_02g0009680.01 | Chr02 | 7260777 | 7263952 | - | NAM | ||
| CDS seq | atggctgtctacaacatcctcatcctctttctactactattgctcttctctctatcggcggcgcagcccagcgccaacgagcaaacactactcctagcaatcaagcaagattgggacaacccagctccactcagttcatggagcagcACcggcaactggactggcgttatctacaacaatatcacaggacaggtcactggcctctccttcccaagtttccatatagccagaccaatcccagcctccgtttgtagcctcaagaacctgacctacatagacctctctttcaacaatctcaccagtgatttccccacggtgctctacggttgctcagctttggagttccttgacctatccaacaatcaattatccggtagacttcccggtgacatcgacaagctgtcatcggggatgctgcacctcaacctgtcgagcaatgcttttgttggcgatgtgccatcggctattggaaggttctcgaagctcaagtcgttggtacttgacactaatcgcttcaacgggaattacccgggtgccgccattggaggccttgtggagcttgagatgctaacgctggcgtccaatccgttcaaaccgggtccaattcccgacgagttcagcaagctaacaaagctgacgtatttgtggttgtcatttatgaaccttactggggccatccctgatgctctatcaacattgacggagcttacattattggacatatcagttaacaagatgcaaggagaaatccctaagtggatatggaagctcgaaaagcttgagcaactgtacctctttgcaaacaagttcactggtgggattggcccggacatcacagctctcaacctgcagcagcttgatctgtccatgaataagctcaccggaccaataccagaagacattgcaaatatgaagaacttgagcttgctatacttgtactacaacaacctcactggacccatcccgacaggtgtcggtttgctaccaaacctaaccgacattcgtctcttcaataacatgctctctggttccctaccaccagagctaggaaaatattcagaattggggaattttgaggtgtcgaacaacaacctatctggtgagttgcctgatacgctctgtttcaacaaaaagttctatgaccttgtggtgttcaacaatagcttctccggcgtgttcccggcgaacctcggggattgcgaaaccatcaacaatgtcatggcatacaacaaccactttgtcggggatttcccaaagaagatatggtcatttgcactgctcaccaatgtcatgatttacaacaacgaattcaccggcactctaccaagtgagatatcacctaacatcactaggattgagattgggaacaatctattctccggtgcgctcccatccgccgccatcgcactaaagagcttcaaggcggagaacaaccagttctccggagcactaccggatgacatgtcgaggctcgccaacctcaccgagctgatcctcgctggcaaccggctatccggctcgatttcgtccctgatcaccgtcttctcggtgctcgccggcgtcttgttcattggcgccgtggccatccggttgctgatgctccggcaccagaagcggcggcaggatctcgccgggtggaagatgacgccgttccgtactctagacttctccgagtgtgatgtgctcggcaatctccacgaggacaacgtgatcggcagcggcggctccggcaaggtgtaccgcatcaacatcggcggcaagggcagcgccggcaaggtggtggcggtgaagcggctatggcggacggcggccaagtcggacgcgaagagcgacaaggagttcgacgccgaggtgaggatcctcggggaggtacgccacatcaacatcatcgacctcctctgctgcatctccggcgacgacaccaagctgctcgtctacgagtacatggagaacggcagcctcgaccgagcgaaggtgaacgagaaggtggacgtgtacgcgttcggcgtcgtgctgctggagctgacgacggggcgggtggcgaacgacggcggcgcggactggtgcctggcggagtgggcgtggcggaggtacaaggccggcggcgagctgcacgacgtcgtcgacgagagcatccaggacagggcggcgttcctggaggacgccgtggcggtgttcctgctcggcatgatctgcaccggcgaagtcccgacgtcgcggccgacgatgaaggaggtgctcgagcagctggtccagtacgaccgcacgtccagcgtggccgccgcgtgccgtgacaactccggcggcgcgccgtcgttctccaaggggaagaaagacgggaaagggaagagctcgtcggcgggaacgacggccgggaaaatgtggggcgccggcgccggcgacgaggaaagcggcagcttcgtggcgcatccggtttaa
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| Protein seq | MAVYNILILFLLLLLFSLSAAQPSANEQTLLLAIKQDWDNPAPLSSWSSTGNWTGVIYNNITGQVTGLSFPSFHIARPIPASVCSLKNLTYIDLSFNNLTSDFPTVLYGCSALEFLDLSNNQLSGRLPGDIDKLSSGMLHLNLSSNAFVGDVPSAIGRFSKLKSLVLDTNRFNGNYPGAAIGGLVELEMLTLASNPFKPGPIPDEFSKLTKLTYLWLSFMNLTGAIPDALSTLTELTLLDISVNKMQGEIPKWIWKLEKLEQLYLFANKFTGGIGPDITALNLQQLDLSMNKLTGPIPEDIANMKNLSLLYLYYNNLTGPIPTGVGLLPNLTDIRLFNNMLSGSLPPELGKYSELGNFEVSNNNLSGELPDTLCFNKKFYDLVVFNNSFSGVFPANLGDCETINNVMAYNNHFVGDFPKKIWSFALLTNVMIYNNEFTGTLPSEISPNITRIEIGNNLFSGALPSAAIALKSFKAENNQFSGALPDDMSRLANLTELILAGNRLSGSISSLITVFSVLAGVLFIGAVAIRLLMLRHQKRRQDLAGWKMTPFRTLDFSECDVLGNLHEDNVIGSGGSGKVYRINIGGKGSAGKVVAVKRLWRTAAKSDAKSDKEFDAEVRILGEVRHINIIDLLCCISGDDTKLLVYEYMENGSLDRAKVNEKVDVYAFGVVLLELTTGRVANDGGADWCLAEWAWRRYKAGGELHDVVDESIQDRAAFLEDAVAVFLLGMICTGEVPTSRPTMKEVLEQLVQYDRTSSVAAACRDNSGGAPSFSKGKKDGKGKSSSAGTTAGKMWGAGAGDEESGSFVAHPV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0009680 | OsKeNa_02g0009680.02 | Chr02 | 7260639 | 7263980 | - | IsoSeq | ||
| CDS seq | atggcggacggcggccaagtcggacgcgaagagcgacaaggagttcgacgccgaggtgaggatcctcggggaggtacgccacatcaacatcatcgacctcctctgctgcatctccggcgacgacaccaagctgctcgtctacgagtacatggagaacggcagcctcgaccggtggctgcaccgccgcgacgacggcggcgcgccgacggcgccgctccagtggccgacgcggctgtgcatcgccatcgacgcggcgagggggctcagctacatgcaccacgagtgcgcgcagccgatcatgcaccgcgacgtcaagtccagcaacatcctgctcgacccggccttccgcgccaagatcgccgacttcggcctcgccaggatcctcgtcaagtccggcgagccgaattccatctccgccatcggcggcaccttcggctacatggctccagagtacgggtgcagagcgaaggtgaacgagaaggtggacgtgtacgcgttcggcgtcgtgctgctggagctgacgacggggcgggtggcgaacgacggcggcgcggactggtgcctggcggagtgggcgtggcggaggtacaaggccggcggcgagctgcacgacgtcgtcgacgagagcatccaggacagggcggcgttcctggaggacgccgtggcggtgttcctgctcggcatgatctgcaccggcgaagtcccgacgtcgcggccgacgatgaaggaggtgctcgagcagctggtccagtacgaccgcacgtccagcgtggccgccgcgtg
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| Protein seq | MADGGQVGREERQGVRRRGEDPRGGTPHQHHRPPLLHLRRRHQAARLRVHGERQPRPVAAPPRRRRRADGAAPVADAAVHRHRRGEGAQLHAPRVRAADHAPRRQVQQHPARPGLPRQDRRLRPRQDPRQVRRAEFHLRHRRHLRLHGSRVRVQSEGEREGGRVRVRRRAAGADDGAGGERRRRGLVPGGVGVAEVQGRRRAARRRRREHPGQGGVPGGRRGGVPARHDLHRRSPDVAADDEGGARAAGPVRPHVQRGRRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.179892 | 1.959347 | 1.692917 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0228151 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13510 | SBH | 6.646168 | 5.364959 | 1.247230 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0228151 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009580 | SBH | 0.0 | 1.875847 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009530 | SBH | 0.095448 | 1.284628 | 0.192024 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009370 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009510 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0121400 | SBH | 17.00068 | 17.508032 | 0.948289 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009350 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0124500 | SBH | 0.179527 | 0.172378 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009770 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009450 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009780 | SBH | 19.474405 | 33.292999 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009800 | SBH | 3.465631 | 0.668533 | 2.012019 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009460 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009710 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009510 | RBH | 0.0 | 0.0 | 0.0 |
