Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0228151 | OGI:02021410 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:7219172-7219630 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAACCGGATGCGCCACGAAGCTGCCGCTTTCCTCGTCGCTGGCGCCGGCGCCCCACATTTTCCCGGCCATCATTCCCGCCGACGAGCTCTTCCACTTCCCGTCTTTCTTCCCCTTCGAGAACGACGGCGCGCCGCCGGAGTCGTCGCGGCAGGCGGCGGCCACGCTGAACGTGCGGTCGTACTGGACCAACTGCTCGAGCACCTCCTTCATCGTCGGCCGCGACGCCGGGTCTTCGCCGGTGCAGATCATGCCGAGCAGGAACACCGCCACGGCGTCCTCCAGGAACGCCGCCCTGTCCTGGATGCTCTCGTCGACAACATCGTGCAGCTCGCCGCCGACCTTTTACCTCCGCCACGCCCACTCCGCCAGGCACCAGTCTGCGCCGCCGTCGTTCGCCACCCTCCCGTCGTCAGCTCCAGCAGCACGACACTAAATTTGTGATACTGGCCTTATCAT
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| CDS seq | ATGATAAGGCCAGTCGGCGGCGAGCTGCACGATGTTGTCGACGAGAGCATCCAGGACAGGGCGGCGTTCCTGGAGGACGCCGTGGCGGTGTTCCTGCTCGGCATGATCTGCACCGGCGAAGACCCGGCGTCGCGGCCGACGATGAAGGAGGTGCTCGAGCAGTTGGTCCAGTACGACCGCACGTTCAGCGTGGCCGCCGCCTGCCGCGACGACTCCGGCGGCGCGCCGTCGTTCTCGAAGGGGAAGAAAGACGGGAAGTGGAAGAGCTCGTCGGCGGGAATGATGGCCGGGAAAATGTGGGGCGCCGGCGCCAGCGACGAGGAAAGCGGCAGCTTCGTGGCGCATCCGGTTTAA |
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| Protein seq | MIRPVGGELHDVVDESIQDRAAFLEDAVAVFLLGMICTGEDPASRPTMKEVLEQLVQYDRTFSVAAACRDDSGGAPSFSKGKKDGKWKSSSAGMMAGKMWGAGASDEESGSFVAHPV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0228151 | OsNip_02t0228151-00 | Chr02 | 7219172 | 7219630 | - | RAP2018-11-26 | ||
| CDS seq | ATGATAAGGCCAGTCGGCGGCGAGCTGCACGATGTTGTCGACGAGAGCATCCAGGACAGGGCGGCGTTCCTGGAGGACGCCGTGGCGGTGTTCCTGCTCGGCATGATCTGCACCGGCGAAGACCCGGCGTCGCGGCCGACGATGAAGGAGGTGCTCGAGCAGTTGGTCCAGTACGACCGCACGTTCAGCGTGGCCGCCGCCTGCCGCGACGACTCCGGCGGCGCGCCGTCGTTCTCGAAGGGGAAGAAAGACGGGAAGTGGAAGAGCTCGTCGGCGGGAATGATGGCCGGGAAAATGTGGGGCGCCGGCGCCAGCGACGAGGAAAGCGGCAGCTTCGTGGCGCATCCGGTTTAA
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| Protein seq | MIRPVGGELHDVVDESIQDRAAFLEDAVAVFLLGMICTGEDPASRPTMKEVLEQLVQYDRTFSVAAACRDDSGGAPSFSKGKKDGKWKSSSAGMMAGKMWGAGASDEESGSFVAHPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0557100 | SBH | 2.966755 | 3.056689 | 3.144203 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13510 | SBH | 6.646168 | 5.364959 | 1.247230 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0228151 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009600 | SBH | 2.319620 | 26.551352 | 5.285308 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009670 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009550 | SBH | 10.334341 | 12.236408 | 4.665827 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009410 | SBH | 1.304985 | 0.151174 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009560 | SBH | 30.706505 | 14.294057 | 48.083878 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0121400 | SBH | 17.00068 | 17.508032 | 0.948289 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009350 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0124500 | RBH | 0.179527 | 0.172378 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009810 | SBH | 2.356398 | 0.553456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009490 | SBH | 2.658061 | 9.032743 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009780 | SBH | 19.474405 | 33.292999 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009800 | SBH | 3.465631 | 0.668533 | 2.012019 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009510 | SBH | 1.774445 | 5.184280 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009710 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009510 | SBH | 0.0 | 0.0 | 0.0 |
