Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_02g0008910 OGI:02018990 | 15/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr02:6474342-6478618
Gene Symbol -
DNA seq

tggtgcgaagttctattgataaaacaggaaaaaattaaaagattacaatctgtaaggtcgtaaccaggaaaaacgaggcttaaagtcttcaagataagtttttaaaacgagtccaagccgccGggcagactgcgaatttgcaaacccgtcgaatgccagccagtgcacccacaacttgttacttggcttgaatcaaactacacagtggcaagtgctccttccagctatatattaatcacatcataaccttcaatttgccttaagagatatagcagaaaagaaaggaccaaccaacagcggcagcaatggtgttgatccaccatacccatgaccatgagcttctcttgctcgccatcatcatcttcctttcgtgctctaacaatggccatgcctcccggcctcaccttcttcatccaccaccaccaacgtcaccgaccgccttgcgctcatgtcattcaggtcgctcataaggagtgacccaacccaggcactcgcatcctggggcaaccaatccatcccgatgtgccaatggcgtggtgtggcgtgtgggctgagtggacgccgcacaggccgtgtggtggcgctggacctcaccaagctcaaccttgtaggcgccatctcacctttgctcggcaacctcacatacctgaggcggctccatctccacaagaatcgcctccatggcgagataccgtcggagctcggccatctccgagacctgagacacctcaaccgcagctacaactccatccaaGggGCCGATCCCAGCGACGCTTTCAACCTGCAGAGGAATGGAGAACATTTGGCTCTACAGCAACAAGCTGCAGGGCCAAATACCAAGTGAGTTTGGATCCCTGCAAAATCTTCAGGCACTTGTTCTTGGGGAAAATAGACTTACTGGAAGCATCCCTTCATTCATTGGAAGCCTCGCGAATCTGAAATTTCTAATCCTAGAAGAAAACAACTTTACAGGAGAAATTCCATCAGACATAGGCAGACTGGCCAATCTCACTGTTCTAGGACTAGGTTCTAATCAACTCTCAGGACCAATTCCTGCCTCAATAGGAAATCTCTCGGCACTACAATTTCTTAGTGTCTTCTCTAATAACCTGGTAGGAAGCATCCCACCGATGCAACGCTTGTCCTCTCTCGAATTCTTTGAACTAGGGAAGAACAATATCGAAGGAAGCATCCCAACTTGGCTGGGAAACCTCTCATCATTACTTACTGTGAAACTTGGAGGCAATAGACTAGATGGGAACATCCCTGAATCACTGGgggaaactgaagttgcttacatctcttgatctatcaagtaataatctagtgggcccagtacctgatactattggaaacctatattccattaagcagtttcatgtagaaaataatgagctagaagGtTCtttaccttcttcaatattcaatctttcctctcttgaagaactcaacttacaaaccaacaacctaaatgggaccattccacttgacttaggcaaccgcctgccaaagctccagttattcctaatatctgaaaaccagtttcatggctcaattccaccctccctgtgcaatatttctacgcttagatggatccaaacagtaaacaattctttgtcaggaaccatcccccaatgcataggaatcaaccaaaagagcttatattccgtaacttttgcagtgaatcagtttgaaacgagtaataaATatggttggagcttcatgtctagtttaactaactgcagcaatttgcgactacttgatgtgggtgacaacaagcttacaggtgagctaccaaattcaattggcaatctttccacacgtcttgagtattttgtcaccaactacaacagtatgactggcaaaatacctgaagggctagggaatctggtcagcttgaagttcatcgagatgaacaataacttctacgagggcacaataccagactctcttggcaaactcaagaacctgaatagactatatctcactaacaacaacctttcaggatccattccatcaagtatcggcaaccttcgtatgctaacattattatctgttgcaggcaatgcaCttagtggagaaataCCccccagtctcagcaattgccctttggaacagttggaactctcatacaataatcttactgggttgattccaaaagaacttttcgccatctctgtcttgtctacttctttgattttggatcataattttataactgggcctctgccctctgaagtgggtaatctaacaaaccttgcattacttgatttctctagcaatttgatttctggagagatcccgtcctccattggtgagtgccagagtctacaatatctcaatacatctggaaacttactccaagggcaaattccaccatcactagatcaaccaaagggcctcctgttgcttgatctttctcataataatttatccggaagcatccctaagttccttgggaccatgacagggcttgctagtttgaatctttcattcaacaactttgagggtgatgtcccaaaagatggaatctttagcaatgcgactcctgctttaattgagggaaataatggcctatgtaatggaatccctcaactgaagttgccaccctgctctcatcagacaacaaaacacaagaagcaaacatggaaaattgccatggcaatttctatatgcagcacagttctatttatggcagtagtagccacatctttcgtgttccacaaacgggccaagaagacaaatgcaaaccgacaaacatcacttattaaagagcagcatatgagagtttcttacactgaattggctgaagcaacaaaaggttttacttctgagaacctcattggagcagggagcttcggctctgtgtacaagggaagaatgaaaatcaatgaccaacaagtagctgttgctgtgaaagtgttcaacctcaagcagcgtggttcatctaagagttttgcagcagaatgtgagactttaagatgtgttcgacatcggaaccttgtaaaggtactgaccgtatgctcaagtatcgattttcagggccgtgatttcaaggccattgtatacaagttcctaccgaatagAaatttagatcaatggctacaccaaaatatcatggaagatggtgaacacaaggcattagatctcatcacgcgactagaaatcgcaattgatgtggcatcctcacttgaatatcttcaccaatataaggcatcgccaatcattcactgtgatcttaagccaagcaatgttctcctcgacgatgagatggttgcacatgttggtgattttggccttgcaagatttcttcaccaggacccagagcaatcaagtggttgggcatcaatgagaggcacaactggttatgctgctccaggtaagctcctaattgttgtagcttttttttatcataTttcatattatatgtatcctactatgctggattcagccaaaatggagtaagacttattggtacttcaTtttactacatagacaagttttgatgaaactcttatttccctaggaatttgaaaggggaaaaatgaacaagtatatggtagcaaaatgttgtatcctgtaaatggatttcgcacaaacataaataggcttgtggagttattttctcataagccatttcttatttttagagtatggactgggcaacgaagtctcaatccatggcgatgtatatagctatggtatattgttgctggagatgtttagcgggaagagaccaacagacagcgaatttggagaatcccttggcctccataattatgtcaatatggcattgccagacaggacggctagtgtcatagaccttagcttactagaagagacagtggatggcgaagcaaagacatcaaaatctaaccagacaagagaaatgagaattgcttgcattacctcaattctgcatgttggagtttcctgttcagtggagacaccaacagatcgcatgccaatcggagatgccctgaaagagctgcagagaataagagacaagttccacagggagttgcaaggagcaggagcgacaaaccatcaagacattcaaatctgttgatgcgcagcaaccaaccggatcaataaaggcgtaaagagctgcaagatttctgctactccttgccatctaggctagccaaaataaaatcataatgttgcaaattacaaagtttggcattctgtttgatccttgccatgaagatcttgtacatactatgaaccaaccacatcttggcaaatcacattattatatgcttttcctttgttga

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CDS seq

atgtcattcaggtcgctcataaggagtgacccaacccaggcactcgcatcctggggcaaccaatccatcccgatgtgccaatggcgtggtgtggcgtgtgggctgagtggacgccgcacaggccgtgtggtggcgctggacctcaccaagctcaaccttgtaggcgccatctcacctttgctcggcaacctcacatacctgaggcggctccatctccacaagaatcgcctccatggcgagataccgtcggagctcggccatctccgagacctgagacacctcaaccgcagctacaactccatccaaGggGCCGATCCCAGCGACGCTTTCAACCTGCAGAGGAATGGAGAACATTTGGCTCTACAGCAACAAGCTGCAGGGCCAAATACCAAACTTACTGGAAGCATCCCTTCATTCATTGGAAGCCTCGCGAATCTGAAATTTCTAATCCTAGAAGAAAACAACTTTACAGGAGAAATTCCATCAGACATAGGCAGACTGGCCAATCTCACTGTTCTAGGACTAGGTTCTAATCAACTCTCAGGACCAATTCCTGCCTCAATAGGAAATCTCTCGGCACTACAATTTCTTAGTGTCTTCTCTAATAACCTGGTAGGAAGCATCCCACCGATGCAACGCTTGTCCTCTCTCGAATTCTTTGAACTAGGGAAGAACAATATCGAAGGAAGCATCCCAACTTGGCTGGGAAACCTCTCATCATTACTTACTGTGAAACTTGGAGGCAATAGACTAGATGGGAACATCCCTGAATCACTGGgggaaactgaatttcatgtagaaaataatgagctagaagGtTCtttaccttcttcaatattcaatctttcctctcttgaagaactcaacttacaaaccaacaacctaaatgggaccattccacttgacttaggcaaccgcctgccaaagctccagttattcctaatatctgaaaaccagtttcatggctcaattccaccctccctgtgcaatatttctacgcttagatggatccaaacagtaaacaattctttgtcaggaaccatcccccaatgcataggaatcaaccaaaagagcttatattccgtaacttttgcagtgaatcagtttgaaacgagtaataaATatggttggagcttcatgtctagtttaactaactgcagcaatttgcgactacttgatgtgggtgacaacaagcttacaggtgagctaccaaattcaattggcaatctttccacacgtcttgagtattttgtcaccaactacaacagtatgactggcaaaatacctgaagggctagggaatctggtcagcttgaagttcatcgagatgaacaataacttctacgagggcacaataccagactctcttggcaaactcaagaacctgaatagactatatctcactaacaacaacctttcaggatccattccatcaagtatcggcaaccttcgtatgctaacattattatctgttgcaggcaatgcaCttagtggagaaataCCccccagtctcagcaattgccctttggaacagttggaactctcatacaataatcttactgggttgattccaaaagaacttttcgccatctctgtcttgtctacttctttgattttggatcataattttataactgggcctctgccctctgaagtgggtaatctaacaaaccttgcattacttgatttctctagcaatttgatttctggagagatcccgtcctccattggtgagtgccagagtctacaatatctcaatacatctggaaacttactccaagggcaaattccaccatcactagatcaaccaaagggcctcctgttgcttgatctttctcataataatttatccggaagcatccctaagttccttgggaccatgacagggcttgctagtttgaatctttcattcaacaactttgagggtgatgtcccaaaagatggaatctttagcaatgcgactcctgctttaattgagggaaataatggcctatgtaatggaatccctcaactgaagttgccaccctgctctcatcagacaacaaaacacaagaagcaaacatggaaaattgccatggcaatttctatatgcagcacagttctatttatggcagtagtagccacatctttcgtgttccacaaacgggccaagaagacaaatgcaaaccgacaaacatcacttattaaagagcagcatatgagagtttcttacactgaattggctgaagcaacaaaaggttttacttctgagaacctcattggagcagggagcttcggctctgtgtacaagggaagaatgaaaatcaatgaccaacaagtagctgttgctgtgaaagtgttcaacctcaagcagcgtggttcatctaagagttttgcagcagaatgtgagactttaagatgtgttcgacatcggaaccttgtaaaggtactgaccgtatgctcaagtatcgattttcagggccgtgatttcaaggccattgtatacaagttcctaccgaatagAaatttagatcaatggctacaccaaaatatcatggaagatgagtatggactgggcaacgaagtctcaatccatggcgatgtatatagctatggtatattgttgctggagatgtttagcgggaagagaccaacagacagcgaatttggagaatcccttggcctccataattatgtcaatatggcattgccagacaggacggctagtgtcatagaccttagcttactagaagagacagtggatggcgaagcaaagacatcaaaatctaaccagacaagagaaatgagaattgcttgcattacctcaattctgcatgttggagtttcctgttcagtggagacaccaacagatcgcatgccaatcggagatgccctgaaagagctgcagagaataagagacaagttccacagggagttgcaaggagcaggagcgacaaaccatcaagacattcaaatctgttga

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Protein seq

MSFRSLIRSDPTQALASWGNQSIPMCQWRGVACGLSGRRTGRVVALDLTKLNLVGAISPLLGNLTYLRRLHLHKNRLHGEIPSELGHLRDLRHLNRSYNSIQGADPSDAFNLQRNGEHLALQQQAAGPNTKLTGSIPSFIGSLANLKFLILEENNFTGEIPSDIGRLANLTVLGLGSNQLSGPIPASIGNLSALQFLSVFSNNLVGSIPPMQRLSSLEFFELGKNNIEGSIPTWLGNLSSLLTVKLGGNRLDGNIPESLGETEFHVENNELEGSLPSSIFNLSSLEELNLQTNNLNGTIPLDLGNRLPKLQLFLISENQFHGSIPPSLCNISTLRWIQTVNNSLSGTIPQCIGINQKSLYSVTFAVNQFETSNKYGWSFMSSLTNCSNLRLLDVGDNKLTGELPNSIGNLSTRLEYFVTNYNSMTGKIPEGLGNLVSLKFIEMNNNFYEGTIPDSLGKLKNLNRLYLTNNNLSGSIPSSIGNLRMLTLLSVAGNALSGEIPPSLSNCPLEQLELSYNNLTGLIPKELFAISVLSTSLILDHNFITGPLPSEVGNLTNLALLDFSSNLISGEIPSSIGECQSLQYLNTSGNLLQGQIPPSLDQPKGLLLLDLSHNNLSGSIPKFLGTMTGLASLNLSFNNFEGDVPKDGIFSNATPALIEGNNGLCNGIPQLKLPPCSHQTTKHKKQTWKIAMAISICSTVLFMAVVATSFVFHKRAKKTNANRQTSLIKEQHMRVSYTELAEATKGFTSENLIGAGSFGSVYKGRMKINDQQVAVAVKVFNLKQRGSSKSFAAECETLRCVRHRNLVKVLTVCSSIDFQGRDFKAIVYKFLPNRNLDQWLHQNIMEDEYGLGNEVSIHGDVYSYGILLLEMFSGKRPTDSEFGESLGLHNYVNMALPDRTASVIDLSLLEETVDGEAKTSKSNQTREMRIACITSILHVGVSCSVETPTDRMPIGDALKELQRIRDKFHRELQGAGATNHQDIQIC

Function Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_02g0008910 OsKeNa_02g0008910.01 Chr02 6474342 6478618 + NAM
CDS seq

atgtcattcaggtcgctcataaggagtgacccaacccaggcactcgcatcctggggcaaccaatccatcccgatgtgccaatggcgtggtgtggcgtgtgggctgagtggacgccgcacaggccgtgtggtggcgctggacctcaccaagctcaaccttgtaggcgccatctcacctttgctcggcaacctcacatacctgaggcggctccatctccacaagaatcgcctccatggcgagataccgtcggagctcggccatctccgagacctgagacacctcaaccgcagctacaactccatccaaGggGCCGATCCCAGCGACGCTTTCAACCTGCAGAGGAATGGAGAACATTTGGCTCTACAGCAACAAGCTGCAGGGCCAAATACCAAACTTACTGGAAGCATCCCTTCATTCATTGGAAGCCTCGCGAATCTGAAATTTCTAATCCTAGAAGAAAACAACTTTACAGGAGAAATTCCATCAGACATAGGCAGACTGGCCAATCTCACTGTTCTAGGACTAGGTTCTAATCAACTCTCAGGACCAATTCCTGCCTCAATAGGAAATCTCTCGGCACTACAATTTCTTAGTGTCTTCTCTAATAACCTGGTAGGAAGCATCCCACCGATGCAACGCTTGTCCTCTCTCGAATTCTTTGAACTAGGGAAGAACAATATCGAAGGAAGCATCCCAACTTGGCTGGGAAACCTCTCATCATTACTTACTGTGAAACTTGGAGGCAATAGACTAGATGGGAACATCCCTGAATCACTGGgggaaactgaatttcatgtagaaaataatgagctagaagGtTCtttaccttcttcaatattcaatctttcctctcttgaagaactcaacttacaaaccaacaacctaaatgggaccattccacttgacttaggcaaccgcctgccaaagctccagttattcctaatatctgaaaaccagtttcatggctcaattccaccctccctgtgcaatatttctacgcttagatggatccaaacagtaaacaattctttgtcaggaaccatcccccaatgcataggaatcaaccaaaagagcttatattccgtaacttttgcagtgaatcagtttgaaacgagtaataaATatggttggagcttcatgtctagtttaactaactgcagcaatttgcgactacttgatgtgggtgacaacaagcttacaggtgagctaccaaattcaattggcaatctttccacacgtcttgagtattttgtcaccaactacaacagtatgactggcaaaatacctgaagggctagggaatctggtcagcttgaagttcatcgagatgaacaataacttctacgagggcacaataccagactctcttggcaaactcaagaacctgaatagactatatctcactaacaacaacctttcaggatccattccatcaagtatcggcaaccttcgtatgctaacattattatctgttgcaggcaatgcaCttagtggagaaataCCccccagtctcagcaattgccctttggaacagttggaactctcatacaataatcttactgggttgattccaaaagaacttttcgccatctctgtcttgtctacttctttgattttggatcataattttataactgggcctctgccctctgaagtgggtaatctaacaaaccttgcattacttgatttctctagcaatttgatttctggagagatcccgtcctccattggtgagtgccagagtctacaatatctcaatacatctggaaacttactccaagggcaaattccaccatcactagatcaaccaaagggcctcctgttgcttgatctttctcataataatttatccggaagcatccctaagttccttgggaccatgacagggcttgctagtttgaatctttcattcaacaactttgagggtgatgtcccaaaagatggaatctttagcaatgcgactcctgctttaattgagggaaataatggcctatgtaatggaatccctcaactgaagttgccaccctgctctcatcagacaacaaaacacaagaagcaaacatggaaaattgccatggcaatttctatatgcagcacagttctatttatggcagtagtagccacatctttcgtgttccacaaacgggccaagaagacaaatgcaaaccgacaaacatcacttattaaagagcagcatatgagagtttcttacactgaattggctgaagcaacaaaaggttttacttctgagaacctcattggagcagggagcttcggctctgtgtacaagggaagaatgaaaatcaatgaccaacaagtagctgttgctgtgaaagtgttcaacctcaagcagcgtggttcatctaagagttttgcagcagaatgtgagactttaagatgtgttcgacatcggaaccttgtaaaggtactgaccgtatgctcaagtatcgattttcagggccgtgatttcaaggccattgtatacaagttcctaccgaatagAaatttagatcaatggctacaccaaaatatcatggaagatgagtatggactgggcaacgaagtctcaatccatggcgatgtatatagctatggtatattgttgctggagatgtttagcgggaagagaccaacagacagcgaatttggagaatcccttggcctccataattatgtcaatatggcattgccagacaggacggctagtgtcatagaccttagcttactagaagagacagtggatggcgaagcaaagacatcaaaatctaaccagacaagagaaatgagaattgcttgcattacctcaattctgcatgttggagtttcctgttcagtggagacaccaacagatcgcatgccaatcggagatgccctgaaagagctgcagagaataagagacaagttccacagggagttgcaaggagcaggagcgacaaaccatcaagacattcaaatctgttga

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Protein seq

MSFRSLIRSDPTQALASWGNQSIPMCQWRGVACGLSGRRTGRVVALDLTKLNLVGAISPLLGNLTYLRRLHLHKNRLHGEIPSELGHLRDLRHLNRSYNSIQGADPSDAFNLQRNGEHLALQQQAAGPNTKLTGSIPSFIGSLANLKFLILEENNFTGEIPSDIGRLANLTVLGLGSNQLSGPIPASIGNLSALQFLSVFSNNLVGSIPPMQRLSSLEFFELGKNNIEGSIPTWLGNLSSLLTVKLGGNRLDGNIPESLGETEFHVENNELEGSLPSSIFNLSSLEELNLQTNNLNGTIPLDLGNRLPKLQLFLISENQFHGSIPPSLCNISTLRWIQTVNNSLSGTIPQCIGINQKSLYSVTFAVNQFETSNKYGWSFMSSLTNCSNLRLLDVGDNKLTGELPNSIGNLSTRLEYFVTNYNSMTGKIPEGLGNLVSLKFIEMNNNFYEGTIPDSLGKLKNLNRLYLTNNNLSGSIPSSIGNLRMLTLLSVAGNALSGEIPPSLSNCPLEQLELSYNNLTGLIPKELFAISVLSTSLILDHNFITGPLPSEVGNLTNLALLDFSSNLISGEIPSSIGECQSLQYLNTSGNLLQGQIPPSLDQPKGLLLLDLSHNNLSGSIPKFLGTMTGLASLNLSFNNFEGDVPKDGIFSNATPALIEGNNGLCNGIPQLKLPPCSHQTTKHKKQTWKIAMAISICSTVLFMAVVATSFVFHKRAKKTNANRQTSLIKEQHMRVSYTELAEATKGFTSENLIGAGSFGSVYKGRMKINDQQVAVAVKVFNLKQRGSSKSFAAECETLRCVRHRNLVKVLTVCSSIDFQGRDFKAIVYKFLPNRNLDQWLHQNIMEDEYGLGNEVSIHGDVYSYGILLLEMFSGKRPTDSEFGESLGLHNYVNMALPDRTASVIDLSLLEETVDGEAKTSKSNQTREMRIACITSILHVGVSCSVETPTDRMPIGDALKELQRIRDKFHRELQGAGATNHQDIQIC

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 1.128539 0.483964

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0215500 RBH 0.000000 0.000000 0.158725
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g12400 RBH 0.000000 0.084031 0.459519
Nipponbare | IRGSP 1.0 | RAP-db Os02g0215500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0008820 RBH 0.251154 5.942551 2.632326
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0008930 RBH 0.037323 0.000000 0.092691
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0008690 SBH 0.252032 0.000000 6.477416
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0008590 RBH 0.078638 0.091543 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0008720 SBH 0.658387 2.168167 7.744017
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0108200 RBH 1.2681925 5.597486 11.5323785
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0008550 SBH 0.060853 0.000000 0.665474
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0112300 RBH 1.4846935 6.0906705 9.196857
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0008980 SBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0008650 RBH 0.057359 0.950016 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0008950 RBH 0.000000 3.971222 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0008930 SBH 0.144910 0.000000 0.270816
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0008700 RBH 0.031801 0.806669 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G008830 SBH 0.000000 0.0 0.367193
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0008800 SBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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