Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0008980 | OGI:02018990 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:6632674-6636427 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgatgctccatacccatgagcttctcttgctcgccatcgtcttcctttcgtgcttctttagccatgtgtcgccggccttactttcttcatccaccatcgaccgcctcgcgctcatgtcattcaggtcgctcataaggagtgacccgacgcaggcactcgcatcctggggcaaccagtccgtaccgatgtgccaatggtacagagtggcgtgtggcctgagaggacgccgtcgtggccgtgtggtggcgctggacctcgccaacctcaaccttcttggtatgatcagccctgcattgggcaacctcacatacatgaggcggctctatcttccacggaacagcttccatggggagctgccaccagagcttggtaatctccgtgacctgaaaaccctgcaccttgaatacaactccatcggaggggagatcccaccatcactctccaactgcggccagctagtgcagattgcactcagcaacaacaagctgcatggggggataccgagtgaattgagctcgttgcataatctcgaggtacttgatctcagtgaaaatagacttacaggaagcatcccttctgatattggtaatcttgtcaatctgagagtgctcggcatgcatttgaacaatcttacaggagaaatcccaccggaaataggcaagctcatcaatctgggtgggttaaacctattctcaaatcagctctcagggtctattcctgtttcactaggaaacctctcggcattgacctttcttgctctctccttcaataagttgactggaagcatcccaccactccaaggattgtcatctcttaaaaccctaggattaggaccgaacaacctgaaaggaagcatcccaacttggttaggaaacctctcatcattacaagtaatagaacttcaggaaagtaatttagagggaaacataccagaatcactagggaacctcaagtggctcacagacctgtttctgttacacaacaatcttagaggtcctgtgcccaatactatcggaaatttacattcccttgaaacactttccgtagaatataatgagctagaaggtcctttacctccttcaatattcaatctttcttcccttcaaactcttggcatacagttcaaccgcctgaatggatcatttccggtcgacataggcaatacccttcccaaccttcaatcattcctagctgacgaaaatcagtttcatggcataatcccaccctccctgtgcaatgcttctatgatgcaaatgatccaagcacagaataatattctatctggaacaattccccagtgtctaggaatccatcaaaagagcttatattctgtagcttttgcacagaatcagcttgaaacaagaaatgactatgattggggcttcatgtctagtctaactaactgcagcaatttgcgactgttagatctgggtgacaacaagcttagaggtgagttaccaaatacagttggcaatctttccacgcgtcttgagtattttatcactggccataacagtataactggaaaaatacctgaagggatagggaatctggttggcctgaagttcattgagatgaacaataacttacatgagggaactattccagccgctcttggcaaactcaagaatctgaataaactatatctcactaacaacaaactttcaggatccatcccatcgagtattggcaaccttcgattgctaattgtactagctcttggaggcaatgcactcagtggagaaataccccctagtctcagcaattgtcctttggaacaattggaactatcatacaacaatctgactggtttgattcctaaagaacttttctccatctctaccttgtctgcttccgtgaatttagaacataattttttaaccgggcctttgccctctgaagtgggtaatctaacaaatcttgcattacttgatttatctaaaaatcggatttctggagagatcccatcctccattggtgagtgccaaagtttacagtatctcaatacatctggaaacttactccaagggaaaataccaccatcactagatcaactaaagggcctcctggtacttgatctttcccacaataatttatccggaagcatccctaagttccttgggaccatgacagggcttgctagtttgaatctttcattcaacaactttgagggtgatgtcccaaaagatggaatctttagcaatgcaactcctgctttaattgagggaaatattggcctatgtaatggaatccctcaactgaagttaccaccctgctctcatcagacaacaaaacgcaagaagaaaacatggaaagttgccatgacaatctctatatgcagcacagttctatttatggcagtagtagccacatctttcgtgctccacaaacgggccaagaagacaaatgcaaaccgacaaacatcacttatcaaagagcagcatatgagagtttcttacactgaattggctgaagcaacaaatggttttgcttctgagaacctcattggagcagggagcttcggctctgtgtacaagggaagtatgagaatcaatgaccaacaagtagctgttgctgtgaaagtgttcaacctcaagcagcgtggttcatctaagagttttgctgcagaatgtgagactttaagatgtgttcgacatcggaaccttgtaaaggtactgacagtatgctcaagtatcgattttcagggccgtgatttcaaggccattgtatacaagttcctaccaaatagaaatttagatcaatggctacaccaaaatatcatggaaaatggtgaacataaggcactagatctcatcacgcgactagaaatcgcaattgatgtagcatcctcacttgaatatcttcaccaatataagccatcgccaatcattcactgtgatcttaagccaagcaatgttctcctcgacgatgaaatggttgcacatgttggtgactttggccttgcaagatttcttcaccaggacccagagcaatcaagtggttgggcatcaatgagaggcacaattggctatgctgctccaggtaagctcctaattgctgtagctttttatcataatatatattatatatatcctactatgctggattcagacaaagtgaagtaagacttatcggtacttcattttactgcatagacaagttttgatgaaactcctatttccctagggatttgaaagggaaaaaaatgagctagtatatggtagaaaaatattgtatcctgtaaatggatttcgcacatacataggcttgtggagttattttctcataatccatttcttatttttagagtatggactgggcaacgaagtctcaatctatggcgatgtatatagctatggtatattgttgctggagatgtttagcgggaagagaccaacagacagtaaatttggagaatcccttggcctccataagtatgtcaatatggcgttgccagacagggtggctagtgtcatagaccttagcttactagaagagacagaggatggcgaagcaaggacatcaatatctaaccagacaagagaaatgagaattgcttgcattacctcaattctgcatgttggagtttcctgttcagtggagacaccaacagatcgtgtgccaattggagatgccctgaaagagctgcaaagaataagagaagttccacagggagttgcaaggagcaggagcgacaatccatcaaggcattcaaatctgttgatgcgcagcaaccagccgtgccaataa
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| CDS seq | atggcgatgctccatacccatgagcttctcttgctcgccatcgtcttcctttcgtgcttctttagccatgtgtcgccggccttactttcttcatccaccatcgaccgcctcgcgctcatgtcattcaggtcgctcataaggagtgacccgacgcaggcactcgcatcctggggcaaccagtccgtaccgatgtgccaatggtacagagtggcgtgtggcctgagaggacgccgtcgtggccgtgtggtggcgctggacctcgccaacctcaaccttcttggtatgatcagccctgcattgggcaacctcacatacatgaggcggctctatcttccacggaacagcttccatggggagctgccaccagagcttggtaatctccgtgacctgaaaaccctgcaccttgaatacaactccatcggaggggagatcccaccatcactctccaactgcggccagctagtgcagattgcactcagcaacaacaagctgcatggggggataccgagtgaattgagctcgttgcataatctcgaggtacttgatctcagtgaaaatagacttacaggaagcatcccttctgatattggtaatcttgtcaatctgagagtgctcggcatgcatttgaacaatcttacaggagaaatcccaccggaaataggcaagctcatcaatctgggtgggttaaacctattctcaaatcagctctcagggtctattcctgtttcactaggaaacctctcggcattgacctttcttgctctctccttcaataagttgactggaagcatcccaccactccaaggattgtcatctcttaaaaccctaggattaggaccgaacaacctgaaaggaagcatcccaacttggttaggaaacctctcatcattacaagtaatagaacttcaggaaagtaatttagagggaaacataccagaatcactagggaacctcaagtggctcacagacctgtttctgttacacaacaatcttagaggtcctgtgcccaatactatcggaaatttacattcccttgaaacactttccgtagaatataatgagctagaaggtcctttacctccttcaatattcaatctttcttcccttcaaactcttggcatacagttcaaccgcctgaatggatcatttccggtcgacataggcaatacccttcccaaccttcaatcattcctagctgacgaaaatcagtttcatggcataatcccaccctccctgtgcaatgcttctatgatgcaaatgatccaagcacagaataatattctatctggaacaattccccagtgtctaggaatccatcaaaagagcttatattctgtagcttttgcacagaatcagcttgaaacaagaaatgactatgattggggcttcatgtctagtctaactaactgcagcaatttgcgactgttagatctgggtgacaacaagcttagaggtgagttaccaaatacagttggcaatctttccacgcgtcttgagtattttatcactggccataacagtataactggaaaaatacctgaagggatagggaatctggttggcctgaagttcattgagatgaacaataacttacatgagggaactattccagccgctcttggcaaactcaagaatctgaataaactatatctcactaacaacaaactttcaggatccatcccatcgagtattggcaaccttcgattgctaattgtactagctcttggaggcaatgcactcagtggagaaataccccctagtctcagcaattgtcctttggaacaattggaactatcatacaacaatctgactggtttgattcctaaagaacttttctccatctctaccttgtctgcttccgtgaatttagaacataattttttaaccgggcctttgccctctgaagtgggtaatctaacaaatcttgcattacttgatttatctaaaaatcggatttctggagagatcccatcctccattggtgagtgccaaagtttacagtatctcaatacatctggaaacttactccaagggaaaataccaccatcactagatcaactaaagggcctcctggtacttgatctttcccacaataatttatccggaagcatccctaagttccttgggaccatgacagggcttgctagtttgaatctttcattcaacaactttgagggtgatgtcccaaaagatggaatctttagcaatgcaactcctgctttaattgagggaaatattggcctatgtaatggaatccctcaactgaagttaccaccctgctctcatcagacaacaaaacgcaagaagaaaacatggaaagttgccatgacaatctctatatgcagcacagttctatttatggcagtagtagccacatctttcgtgctccacaaacgggccaagaagacaaatgcaaaccgacaaacatcacttatcaaagagcagcatatgagagtttcttacactgaattggctgaagcaacaaatggttttgcttctgagaacctcattggagcagggagcttcggctctgtgtacaagggaagtatgagaatcaatgaccaacaagtagctgttgctgtgaaagtgttcaacctcaagcagcgtggttcatctaagagttttgctgcagaatgtgagactttaagatgtgttcgacatcggaaccttgtaaaggtactgacagtatgctcaagtatcgattttcagggccgtgatttcaaggccattgtatacaagttcctaccaaatagaaatttagatcaatggctacaccaaaatatcatggaaaatgagtatggactgggcaacgaagtctcaatctatggcgatgtatatagctatggtatattgttgctggagatgtttagcgggaagagaccaacagacagtaaatttggagaatcccttggcctccataagtatgtcaatatggcgttgccagacagggtggctagtgtcatagaccttagcttactagaagagacagaggatggcgaagcaaggacatcaatatctaaccagacaagagaaatgagaattgcttgcattacctcaattctgcatgttggagtttcctgttcagtggagacaccaacagatcgtgtgccaattggagatgccctgaaagagctgcaaagaataagagaagttccacagggagttgcaaggagcaggagcgacaatccatcaaggcattcaaatctgttgatgcgcagcaaccagccgtgccaataa
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| Protein seq | MAMLHTHELLLLAIVFLSCFFSHVSPALLSSSTIDRLALMSFRSLIRSDPTQALASWGNQSVPMCQWYRVACGLRGRRRGRVVALDLANLNLLGMISPALGNLTYMRRLYLPRNSFHGELPPELGNLRDLKTLHLEYNSIGGEIPPSLSNCGQLVQIALSNNKLHGGIPSELSSLHNLEVLDLSENRLTGSIPSDIGNLVNLRVLGMHLNNLTGEIPPEIGKLINLGGLNLFSNQLSGSIPVSLGNLSALTFLALSFNKLTGSIPPLQGLSSLKTLGLGPNNLKGSIPTWLGNLSSLQVIELQESNLEGNIPESLGNLKWLTDLFLLHNNLRGPVPNTIGNLHSLETLSVEYNELEGPLPPSIFNLSSLQTLGIQFNRLNGSFPVDIGNTLPNLQSFLADENQFHGIIPPSLCNASMMQMIQAQNNILSGTIPQCLGIHQKSLYSVAFAQNQLETRNDYDWGFMSSLTNCSNLRLLDLGDNKLRGELPNTVGNLSTRLEYFITGHNSITGKIPEGIGNLVGLKFIEMNNNLHEGTIPAALGKLKNLNKLYLTNNKLSGSIPSSIGNLRLLIVLALGGNALSGEIPPSLSNCPLEQLELSYNNLTGLIPKELFSISTLSASVNLEHNFLTGPLPSEVGNLTNLALLDLSKNRISGEIPSSIGECQSLQYLNTSGNLLQGKIPPSLDQLKGLLVLDLSHNNLSGSIPKFLGTMTGLASLNLSFNNFEGDVPKDGIFSNATPALIEGNIGLCNGIPQLKLPPCSHQTTKRKKKTWKVAMTISICSTVLFMAVVATSFVLHKRAKKTNANRQTSLIKEQHMRVSYTELAEATNGFASENLIGAGSFGSVYKGSMRINDQQVAVAVKVFNLKQRGSSKSFAAECETLRCVRHRNLVKVLTVCSSIDFQGRDFKAIVYKFLPNRNLDQWLHQNIMENEYGLGNEVSIYGDVYSYGILLLEMFSGKRPTDSKFGESLGLHKYVNMALPDRVASVIDLSLLEETEDGEARTSISNQTREMRIACITSILHVGVSCSVETPTDRVPIGDALKELQRIREVPQGVARSRSDNPSRHSNLLMRSNQPCQ |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0008980 | OsLima_02g0008980.01 | Chr02 | 6632674 | 6636427 | + | NAM | ||
| CDS seq | atggcgatgctccatacccatgagcttctcttgctcgccatcgtcttcctttcgtgcttctttagccatgtgtcgccggccttactttcttcatccaccatcgaccgcctcgcgctcatgtcattcaggtcgctcataaggagtgacccgacgcaggcactcgcatcctggggcaaccagtccgtaccgatgtgccaatggtacagagtggcgtgtggcctgagaggacgccgtcgtggccgtgtggtggcgctggacctcgccaacctcaaccttcttggtatgatcagccctgcattgggcaacctcacatacatgaggcggctctatcttccacggaacagcttccatggggagctgccaccagagcttggtaatctccgtgacctgaaaaccctgcaccttgaatacaactccatcggaggggagatcccaccatcactctccaactgcggccagctagtgcagattgcactcagcaacaacaagctgcatggggggataccgagtgaattgagctcgttgcataatctcgaggtacttgatctcagtgaaaatagacttacaggaagcatcccttctgatattggtaatcttgtcaatctgagagtgctcggcatgcatttgaacaatcttacaggagaaatcccaccggaaataggcaagctcatcaatctgggtgggttaaacctattctcaaatcagctctcagggtctattcctgtttcactaggaaacctctcggcattgacctttcttgctctctccttcaataagttgactggaagcatcccaccactccaaggattgtcatctcttaaaaccctaggattaggaccgaacaacctgaaaggaagcatcccaacttggttaggaaacctctcatcattacaagtaatagaacttcaggaaagtaatttagagggaaacataccagaatcactagggaacctcaagtggctcacagacctgtttctgttacacaacaatcttagaggtcctgtgcccaatactatcggaaatttacattcccttgaaacactttccgtagaatataatgagctagaaggtcctttacctccttcaatattcaatctttcttcccttcaaactcttggcatacagttcaaccgcctgaatggatcatttccggtcgacataggcaatacccttcccaaccttcaatcattcctagctgacgaaaatcagtttcatggcataatcccaccctccctgtgcaatgcttctatgatgcaaatgatccaagcacagaataatattctatctggaacaattccccagtgtctaggaatccatcaaaagagcttatattctgtagcttttgcacagaatcagcttgaaacaagaaatgactatgattggggcttcatgtctagtctaactaactgcagcaatttgcgactgttagatctgggtgacaacaagcttagaggtgagttaccaaatacagttggcaatctttccacgcgtcttgagtattttatcactggccataacagtataactggaaaaatacctgaagggatagggaatctggttggcctgaagttcattgagatgaacaataacttacatgagggaactattccagccgctcttggcaaactcaagaatctgaataaactatatctcactaacaacaaactttcaggatccatcccatcgagtattggcaaccttcgattgctaattgtactagctcttggaggcaatgcactcagtggagaaataccccctagtctcagcaattgtcctttggaacaattggaactatcatacaacaatctgactggtttgattcctaaagaacttttctccatctctaccttgtctgcttccgtgaatttagaacataattttttaaccgggcctttgccctctgaagtgggtaatctaacaaatcttgcattacttgatttatctaaaaatcggatttctggagagatcccatcctccattggtgagtgccaaagtttacagtatctcaatacatctggaaacttactccaagggaaaataccaccatcactagatcaactaaagggcctcctggtacttgatctttcccacaataatttatccggaagcatccctaagttccttgggaccatgacagggcttgctagtttgaatctttcattcaacaactttgagggtgatgtcccaaaagatggaatctttagcaatgcaactcctgctttaattgagggaaatattggcctatgtaatggaatccctcaactgaagttaccaccctgctctcatcagacaacaaaacgcaagaagaaaacatggaaagttgccatgacaatctctatatgcagcacagttctatttatggcagtagtagccacatctttcgtgctccacaaacgggccaagaagacaaatgcaaaccgacaaacatcacttatcaaagagcagcatatgagagtttcttacactgaattggctgaagcaacaaatggttttgcttctgagaacctcattggagcagggagcttcggctctgtgtacaagggaagtatgagaatcaatgaccaacaagtagctgttgctgtgaaagtgttcaacctcaagcagcgtggttcatctaagagttttgctgcagaatgtgagactttaagatgtgttcgacatcggaaccttgtaaaggtactgacagtatgctcaagtatcgattttcagggccgtgatttcaaggccattgtatacaagttcctaccaaatagaaatttagatcaatggctacaccaaaatatcatggaaaatgagtatggactgggcaacgaagtctcaatctatggcgatgtatatagctatggtatattgttgctggagatgtttagcgggaagagaccaacagacagtaaatttggagaatcccttggcctccataagtatgtcaatatggcgttgccagacagggtggctagtgtcatagaccttagcttactagaagagacagaggatggcgaagcaaggacatcaatatctaaccagacaagagaaatgagaattgcttgcattacctcaattctgcatgttggagtttcctgttcagtggagacaccaacagatcgtgtgccaattggagatgccctgaaagagctgcaaagaataagagaagttccacagggagttgcaaggagcaggagcgacaatccatcaaggcattcaaatctgttgatgcgcagcaaccagccgtgccaataa
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| Protein seq | MAMLHTHELLLLAIVFLSCFFSHVSPALLSSSTIDRLALMSFRSLIRSDPTQALASWGNQSVPMCQWYRVACGLRGRRRGRVVALDLANLNLLGMISPALGNLTYMRRLYLPRNSFHGELPPELGNLRDLKTLHLEYNSIGGEIPPSLSNCGQLVQIALSNNKLHGGIPSELSSLHNLEVLDLSENRLTGSIPSDIGNLVNLRVLGMHLNNLTGEIPPEIGKLINLGGLNLFSNQLSGSIPVSLGNLSALTFLALSFNKLTGSIPPLQGLSSLKTLGLGPNNLKGSIPTWLGNLSSLQVIELQESNLEGNIPESLGNLKWLTDLFLLHNNLRGPVPNTIGNLHSLETLSVEYNELEGPLPPSIFNLSSLQTLGIQFNRLNGSFPVDIGNTLPNLQSFLADENQFHGIIPPSLCNASMMQMIQAQNNILSGTIPQCLGIHQKSLYSVAFAQNQLETRNDYDWGFMSSLTNCSNLRLLDLGDNKLRGELPNTVGNLSTRLEYFITGHNSITGKIPEGIGNLVGLKFIEMNNNLHEGTIPAALGKLKNLNKLYLTNNKLSGSIPSSIGNLRLLIVLALGGNALSGEIPPSLSNCPLEQLELSYNNLTGLIPKELFSISTLSASVNLEHNFLTGPLPSEVGNLTNLALLDLSKNRISGEIPSSIGECQSLQYLNTSGNLLQGKIPPSLDQLKGLLVLDLSHNNLSGSIPKFLGTMTGLASLNLSFNNFEGDVPKDGIFSNATPALIEGNIGLCNGIPQLKLPPCSHQTTKRKKKTWKVAMTISICSTVLFMAVVATSFVLHKRAKKTNANRQTSLIKEQHMRVSYTELAEATNGFASENLIGAGSFGSVYKGSMRINDQQVAVAVKVFNLKQRGSSKSFAAECETLRCVRHRNLVKVLTVCSSIDFQGRDFKAIVYKFLPNRNLDQWLHQNIMENEYGLGNEVSIYGDVYSYGILLLEMFSGKRPTDSKFGESLGLHKYVNMALPDRVASVIDLSLLEETEDGEARTSISNQTREMRIACITSILHVGVSCSVETPTDRVPIGDALKELQRIREVPQGVARSRSDNPSRHSNLLMRSNQPCQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615400 | SBH | 1.810530 | 3.247144 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12400 | RBH | 0.000000 | 0.084031 | 0.459519 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025000 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025160 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008690 | SBH | 0.252032 | 0.000000 | 6.477416 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008590 | RBH | 0.078638 | 0.091543 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008720 | RBH | 0.658387 | 2.168167 | 7.744017 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0108200 | RBH | 1.2681925 | 5.597486 | 11.5323785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008550 | RBH | 0.060853 | 0.000000 | 0.665474 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0112300 | RBH | 1.4846935 | 6.0906705 | 9.196857 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013840 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008650 | RBH | 0.057359 | 0.950016 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008950 | RBH | 0.000000 | 3.971222 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008930 | RBH | 0.144910 | 0.000000 | 0.270816 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008700 | RBH | 0.031801 | 0.806669 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008830 | RBH | 0.000000 | 0.0 | 0.367193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004170 | SBH | 0.448533 | 0.000000 | 0.000000 |
