Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0008930 | OGI:02001240 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:6482435-6486332 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agatcgaatggggtttctactttcttctgaacaattttttttttcgaacaaatgccctagtattcaattttttttagccgcacagcacttacaaatttgcaatcatgtataatatagagcctctctgtaattgatgctagctttacataaacaaaaagctgcagaatccgcagcttccggcaccttatttgtgtgttcaatgacatggagcataatatcatgccatgcgcaaaaatgatcttggaatgcttcattgtcttcattggcttgatgttccttcattggacacatgtttctcaaacttgtctcttattgcttgcaactccttcagagcgtctccgatttgcacgcggtccgttggtgcctcctctgagcaggagattccaatgcgcataaccgaagtgacacaagtaattcttagatccttgccgttgtaagagtttgacttgattgctccgccatcttctgtctctggtagtaactgttgatccagaacattagccgcattgtctggcaatgccatttggacatacttgcgaagcccaaccgcttccccgaattcatcgtctgtgggtctttttctggtgaacatctctagcaacagtatgccatagctatagacatcaccttgaattgagacttcattgccaattccatactctgAaaccaacaaaaggaactgtgaagaagaagaaaaaaatgggtacatttccccattctacataaaagggacttctgtcgaaatatactcatataattaagtgagtcagataacaagaaatcctactttagaaagcagatttcttgagttatatacacagaagagaatacagaattatagcaattagagacttagaggtgcacctggtgcagcataaccgactgttcctctcattgatgcccaaccacttgatttctccgactcctgatgcagAaaccttgcaagcccgaaatcgctaacatgagcaaccatgtcactgtcgaggagaacattgcttggcttaagatcacagtgaatgattggcgatggcttatattggtgaagatattcaagtgaagatgccacatcgattgcaatgcgtagtcttgcagtgagatctaatgCcttgtgttcactttgtcccatgatattaGggtgtagccattggtctaaatttccatttggtaggtactcatatacaatggccttgaactcattgccctgaaaatcaatactcgagcatacagtcaatatcttcacaaggttccggtgtcgaacacatctcagtgtctcacattctgccatgaaactttgagatgcaccacgttgtgtgaggttgagcaccttcacagcaactacttgttggtcattgtttgtcattcttcccttatagaccgagccaaagcttcctgctcctatgaggttatcagaggcaaaaccatttgttgcattgactaattcagcataagaaaccctcgtatattgctcactaatgagtgatatttgtgggtttggttttgccttcttgttcctatagtagaatgcaaacagcataaatattaatgtgattaatggcattattctgcatatggagattatgatgataagtttcctggatgccttcttggtggtttggttgaagcagggtggcaatttcatctctgggataccgccacacaggtcatcatttccagcgaggaaggtagctgttgcatttagaaaaacgccatctctgggaacttcaccttcaaatttgttgtatgagaggttcaaaatagatagacctctcatgcccccaagaaatgcagggatgcctccagataaattattgtcagaaaggtcaagcaccaggaggccctttagttgcccaagcgacgatggaattatcccttggagggaatttccagatatattgagctgctgcaagctcttacattcaccaatagatgtaggaatctctccagaaatgttgtttgaagaaaaatcaaactctccaagattttttagattacccatttcagctggtaaagcccccgataaaaaaTtatgtcccaaaaacatgttactggacaaagtagaaatgagaaaaagttgtttaggtatcaagccagtgaggctgttatatgaaagatccaatagttctagaggacaactgctaagattggaaggaatggacccattgagtgcatttccttggagttgtagtagatttagtcctgtaagattgccaagagttggtggaatggatccagacaggttattatatggtatagataatttattcagcatcttgagtttgccaagagaagctggaataattccctctaaacggttaatatccatatagagcaattttaagttgatcaagttccctattccttcaggtatttttccttctatattgttgttcgctatgataagatagctcaaatgcgaagaaagattcccaattgaactcggtagctcaccttgaagcttgttgtaacccaaatctaatgcattcaaattgctgcaattcgccaagctggataagaaaacccaatcagcatcatttgttgcttcaagctgattttttgaaagggccacaactgataagctcttctgttgaattccaagacactgaggaattcttcctgacaaaaagttgtatactgtttgcagaacttgaagcatggtggcattacacaaggatggtgggattgttccatgaaattgattgatgtctacaacaaacctttgtagattcggaagcttattgccaatatcaggtggaagagccccgctgaggcgattgctttgtaaaccaagatcatcaagggaggaaaggttgagcagtgaaggaggaaacgaaccttctagtttattataatccagacgaaggctactcaaggcaccaaggtttccaagagaatctggtatggagcctgaaataagattattttgtgaaagatcaaggctagtaagcatctgaagtctacctaatgattcagggatgtgtcctgagagccgattttgctggagactaacaaacactagagatgagaggttccccaaccatgcaggcacagttccttcgagattgttctctcccaattcaaggacaagaagtgatgaaaggttttgcagcgatggtatgctccctgtcaactttgcagaagggatgctaaggtacttgagtgctgaaaggtttccaagtgaggcaggaatggagcctgccagctgattagaaccaagacctagtccaacaaggccagcaagatcacctatctcctctgggattcccccagtgaggttgctgaattgcaggttcagagtcatgaggtttgcaaggtttccaatctctgatgggatgcttccggtgagggtgttcatgccaaggctgagtaccctgaggccgcgcaacgagcagagctccggcggtatctcgccgtggaacctgttgttgtacagagcgaggatctcgaggccggtgcagttggcgagcgacgccgggatctgcccctggaaggcgttgtcactgaggttgaggtgtctgagctcagcgaggccgccgagctccggcgggaggacgccgtgcagccggttgccggcgaggtggagccgcctcaggtatgtgaggttgccgaggtccggtggcaccgtgccacggaggccaagccccggcagctccagcgccacgacgcggccgcggcgccggcctctcgcgccgcacgccacgccgcgccaccggcacacggggacggaccggttcccccacgtcggcggcggcggcgagccactgcccgtcgacatgcgcgccatgaacgccgtcagcgcgaggccgtcgtcgacgtcgaccgccgccgcggcggcggctgctgctagccacgccagtggccataccgcggcgagcaagagacgcttgccggcgagtgccat
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| CDS seq | atggcactcgccggcaagcgtctcttgctcgccgcggtatggccactggcgtggctagcagcagccgccgccgcggcggcggtcgacgtcgacgacggcctcgcgctgacggcgttcatggcgcgcatgtcgacgggcagtggctcgccgccgccgccgacgtgggggaaccggtccgtccccgtgtgccggtggcgcggcgtggcgtgcggcgcgagaggccggcgccgcggccgcgtcgtggcgctggagctgccggggcttggcctccgtggcacggtgccaccggacctcggcaacctcacatacctgaggcggctccacctcgccggcaaccggctgcacggcgtcctcccgccggagctcggcggcctcgctgagctcagacacctcaacctcagtgacaacgccttccaggggcagatcccggcgtcgctcgccaactgcaccggcctcgagatcctcgctctgtacaacaacaggttccacggcgagataccgccggagctctgctcgttgcgcggcctcagggtactcagccttggcatgaacaccctcaccggaagcatcccatcagagattggaaaccttgcaaacctcatgactctgaacctgcaattcagcaacctcactgggggaatcccagaggagataggtgatcttgctggccttgttggactaggtcttggttctaatcagctggcaggctccattcctgcctcacttggaaacctttcagcactcaagtaccttagcatcccttctgcaaagttgacagggagcataccatcgctgcaaaacctttcatcacttcttgtccttgaattgggagagaacaatctcgaaggaactgtgcctgcatggttggggaacctctcatctctagtgtttgttagtctccagcaaaatcggctctcaggacacatccctgaatcattaggtagacttcagatgcttactagccttgatctttcacaaaataatcttatttcaggctccataccagattctcttggaaaccttggtgccttgagtagccttcgtctggattataataaactagaaggttcgtttcctccttcactgctcaacctttcctcccttgatgatcttggtttacaaagcaatcgcctcagcggggctcttccacctgatattggcaataagcttccgaatctacaaaggtttgttgtagacatcaatcaatttcatggaacaatcccaccatccttgtgtaatgccaccatgcttcaagttctgcaaacagtatacaactttttgtcaggaagaattcctcagtgtcttggaattcaacagaagagcttatcagttgtggccctttcaaaaaatcagcttgaagcaacaaatgatgctgattgggttttcttatccagcttggcgaattgcagcaatttgaatgcattagatttgggttacaacaagcttcaaggtgagctaccgagttcaattgggaatctttcttcgcatttgagctatcttatcatagcgaacaacaatatagaaggaaaaatacctgaaggaatagggaacttgatcaacttaaaattgctctatatggatattaaccgtttagagggaattattccagcttctcttggcaaactcaagatgctgaataaattatctataccatataataacctgtctggatccattccaccaactcttggcaatcttacaggactaaatctactacaactccaaggaaatgcactcaatgggtccattccttccaatcttagcagttgtcctctagaactattggatctttcatataacagcctcactggcttgatacctaaacaactttttctcatttctactttgtccagtaacatgtttttgggacataAttttttatcgggggctttaccagctgaaatgggtaatctaaaaaatcttggagagtttgatttttcttcaaacaacatttctggagagattcctacatctattggtgaatgtaagagcttgcagcagctcaatatatctggaaattccctccaagggataattccatcgtcgcttgggcaactaaagggcctcctggtgcttgacctttctgacaataatttatctggaggcatccctgcatttcttgggggcatgagaggtctatctattttgaacctctcatacaacaaatttgaaggtgaagttcccagagatggcgtttttctaaatgcaacagctaccttcctcgctggaaatgatgacctgtgtggcggtatcccagagatgaaattgccaccctgcttcaaccaaaccaccaagaaggcatccaggaaacttatcatcataatctccatatgcagaataatgccattaatcacattaatatttatgctgtttgcattctactataggaacaagaaggcaaaaccaaacccacaaatatcactcattagtgagcaatatacgagggtttcttatgctgaattagtcaatgcaacaaatggttttgcctctgataacctcataggagcaggaagctttggctcggtctataagggaagaatgacaaacaatgaccaacaagtagttgctgtgaaggtgctcaacctcacacaacgtggtgcatctcaaagtttcatggcagaatgtgagacactgagatgtgttcgacaccggaaccttgtgaagatattgactgtatgctcgagtattgattttcagggcaatgagttcaaggccattgtatatgagtacctaccaaatggaaatttagaccaatggctacaccCtaatatcatgggacaaaagtatggaattggcaatgaagtctcaattcaaggtgatgtctatagctatggcatactgttgctagagatgttcaccagaaaaagacccacagacgatgaattcggggaagcggttgggcttcgcaagtatgtccaaatggcattgccagacaatgcggctaatgttctggatcaacagttactaccagagacagaagatggcggagcaatcaagtcaaactcttacaacggcaaggatctaagaattacttgtgtcacttcggttatgcgcattggaatctcctgctcagaggaggcaccaacggaccgcgtgcaaatcggagacgctctgaaggagttgcaagcaataagagacaagtttgagaaacatgtgtccaatgaaggaacatcaagccaatga
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| Protein seq | MALAGKRLLLAAVWPLAWLAAAAAAAAVDVDDGLALTAFMARMSTGSGSPPPPTWGNRSVPVCRWRGVACGARGRRRGRVVALELPGLGLRGTVPPDLGNLTYLRRLHLAGNRLHGVLPPELGGLAELRHLNLSDNAFQGQIPASLANCTGLEILALYNNRFHGEIPPELCSLRGLRVLSLGMNTLTGSIPSEIGNLANLMTLNLQFSNLTGGIPEEIGDLAGLVGLGLGSNQLAGSIPASLGNLSALKYLSIPSAKLTGSIPSLQNLSSLLVLELGENNLEGTVPAWLGNLSSLVFVSLQQNRLSGHIPESLGRLQMLTSLDLSQNNLISGSIPDSLGNLGALSSLRLDYNKLEGSFPPSLLNLSSLDDLGLQSNRLSGALPPDIGNKLPNLQRFVVDINQFHGTIPPSLCNATMLQVLQTVYNFLSGRIPQCLGIQQKSLSVVALSKNQLEATNDADWVFLSSLANCSNLNALDLGYNKLQGELPSSIGNLSSHLSYLIIANNNIEGKIPEGIGNLINLKLLYMDINRLEGIIPASLGKLKMLNKLSIPYNNLSGSIPPTLGNLTGLNLLQLQGNALNGSIPSNLSSCPLELLDLSYNSLTGLIPKQLFLISTLSSNMFLGHNFLSGALPAEMGNLKNLGEFDFSSNNISGEIPTSIGECKSLQQLNISGNSLQGIIPSSLGQLKGLLVLDLSDNNLSGGIPAFLGGMRGLSILNLSYNKFEGEVPRDGVFLNATATFLAGNDDLCGGIPEMKLPPCFNQTTKKASRKLIIIISICRIMPLITLIFMLFAFYYRNKKAKPNPQISLISEQYTRVSYAELVNATNGFASDNLIGAGSFGSVYKGRMTNNDQQVVAVKVLNLTQRGASQSFMAECETLRCVRHRNLVKILTVCSSIDFQGNEFKAIVYEYLPNGNLDQWLHPNIMGQKYGIGNEVSIQGDVYSYGILLLEMFTRKRPTDDEFGEAVGLRKYVQMALPDNAANVLDQQLLPETEDGGAIKSNSYNGKDLRITCVTSVMRIGISCSEEAPTDRVQIGDALKELQAIRDKFEKHVSNEGTSSQ |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0008930 | OsKeNa_02g0008930.01 | Chr02 | 6482435 | 6486332 | - | NAM | ||
| CDS seq | atggcactcgccggcaagcgtctcttgctcgccgcggtatggccactggcgtggctagcagcagccgccgccgcggcggcggtcgacgtcgacgacggcctcgcgctgacggcgttcatggcgcgcatgtcgacgggcagtggctcgccgccgccgccgacgtgggggaaccggtccgtccccgtgtgccggtggcgcggcgtggcgtgcggcgcgagaggccggcgccgcggccgcgtcgtggcgctggagctgccggggcttggcctccgtggcacggtgccaccggacctcggcaacctcacatacctgaggcggctccacctcgccggcaaccggctgcacggcgtcctcccgccggagctcggcggcctcgctgagctcagacacctcaacctcagtgacaacgccttccaggggcagatcccggcgtcgctcgccaactgcaccggcctcgagatcctcgctctgtacaacaacaggttccacggcgagataccgccggagctctgctcgttgcgcggcctcagggtactcagccttggcatgaacaccctcaccggaagcatcccatcagagattggaaaccttgcaaacctcatgactctgaacctgcaattcagcaacctcactgggggaatcccagaggagataggtgatcttgctggccttgttggactaggtcttggttctaatcagctggcaggctccattcctgcctcacttggaaacctttcagcactcaagtaccttagcatcccttctgcaaagttgacagggagcataccatcgctgcaaaacctttcatcacttcttgtccttgaattgggagagaacaatctcgaaggaactgtgcctgcatggttggggaacctctcatctctagtgtttgttagtctccagcaaaatcggctctcaggacacatccctgaatcattaggtagacttcagatgcttactagccttgatctttcacaaaataatcttatttcaggctccataccagattctcttggaaaccttggtgccttgagtagccttcgtctggattataataaactagaaggttcgtttcctccttcactgctcaacctttcctcccttgatgatcttggtttacaaagcaatcgcctcagcggggctcttccacctgatattggcaataagcttccgaatctacaaaggtttgttgtagacatcaatcaatttcatggaacaatcccaccatccttgtgtaatgccaccatgcttcaagttctgcaaacagtatacaactttttgtcaggaagaattcctcagtgtcttggaattcaacagaagagcttatcagttgtggccctttcaaaaaatcagcttgaagcaacaaatgatgctgattgggttttcttatccagcttggcgaattgcagcaatttgaatgcattagatttgggttacaacaagcttcaaggtgagctaccgagttcaattgggaatctttcttcgcatttgagctatcttatcatagcgaacaacaatatagaaggaaaaatacctgaaggaatagggaacttgatcaacttaaaattgctctatatggatattaaccgtttagagggaattattccagcttctcttggcaaactcaagatgctgaataaattatctataccatataataacctgtctggatccattccaccaactcttggcaatcttacaggactaaatctactacaactccaaggaaatgcactcaatgggtccattccttccaatcttagcagttgtcctctagaactattggatctttcatataacagcctcactggcttgatacctaaacaactttttctcatttctactttgtccagtaacatgtttttgggacataAttttttatcgggggctttaccagctgaaatgggtaatctaaaaaatcttggagagtttgatttttcttcaaacaacatttctggagagattcctacatctattggtgaatgtaagagcttgcagcagctcaatatatctggaaattccctccaagggataattccatcgtcgcttgggcaactaaagggcctcctggtgcttgacctttctgacaataatttatctggaggcatccctgcatttcttgggggcatgagaggtctatctattttgaacctctcatacaacaaatttgaaggtgaagttcccagagatggcgtttttctaaatgcaacagctaccttcctcgctggaaatgatgacctgtgtggcggtatcccagagatgaaattgccaccctgcttcaaccaaaccaccaagaaggcatccaggaaacttatcatcataatctccatatgcagaataatgccattaatcacattaatatttatgctgtttgcattctactataggaacaagaaggcaaaaccaaacccacaaatatcactcattagtgagcaatatacgagggtttcttatgctgaattagtcaatgcaacaaatggttttgcctctgataacctcataggagcaggaagctttggctcggtctataagggaagaatgacaaacaatgaccaacaagtagttgctgtgaaggtgctcaacctcacacaacgtggtgcatctcaaagtttcatggcagaatgtgagacactgagatgtgttcgacaccggaaccttgtgaagatattgactgtatgctcgagtattgattttcagggcaatgagttcaaggccattgtatatgagtacctaccaaatggaaatttagaccaatggctacaccCtaatatcatgggacaaaagtatggaattggcaatgaagtctcaattcaaggtgatgtctatagctatggcatactgttgctagagatgttcaccagaaaaagacccacagacgatgaattcggggaagcggttgggcttcgcaagtatgtccaaatggcattgccagacaatgcggctaatgttctggatcaacagttactaccagagacagaagatggcggagcaatcaagtcaaactcttacaacggcaaggatctaagaattacttgtgtcacttcggttatgcgcattggaatctcctgctcagaggaggcaccaacggaccgcgtgcaaatcggagacgctctgaaggagttgcaagcaataagagacaagtttgagaaacatgtgtccaatgaaggaacatcaagccaatga
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| Protein seq | MALAGKRLLLAAVWPLAWLAAAAAAAAVDVDDGLALTAFMARMSTGSGSPPPPTWGNRSVPVCRWRGVACGARGRRRGRVVALELPGLGLRGTVPPDLGNLTYLRRLHLAGNRLHGVLPPELGGLAELRHLNLSDNAFQGQIPASLANCTGLEILALYNNRFHGEIPPELCSLRGLRVLSLGMNTLTGSIPSEIGNLANLMTLNLQFSNLTGGIPEEIGDLAGLVGLGLGSNQLAGSIPASLGNLSALKYLSIPSAKLTGSIPSLQNLSSLLVLELGENNLEGTVPAWLGNLSSLVFVSLQQNRLSGHIPESLGRLQMLTSLDLSQNNLISGSIPDSLGNLGALSSLRLDYNKLEGSFPPSLLNLSSLDDLGLQSNRLSGALPPDIGNKLPNLQRFVVDINQFHGTIPPSLCNATMLQVLQTVYNFLSGRIPQCLGIQQKSLSVVALSKNQLEATNDADWVFLSSLANCSNLNALDLGYNKLQGELPSSIGNLSSHLSYLIIANNNIEGKIPEGIGNLINLKLLYMDINRLEGIIPASLGKLKMLNKLSIPYNNLSGSIPPTLGNLTGLNLLQLQGNALNGSIPSNLSSCPLELLDLSYNSLTGLIPKQLFLISTLSSNMFLGHNFLSGALPAEMGNLKNLGEFDFSSNNISGEIPTSIGECKSLQQLNISGNSLQGIIPSSLGQLKGLLVLDLSDNNLSGGIPAFLGGMRGLSILNLSYNKFEGEVPRDGVFLNATATFLAGNDDLCGGIPEMKLPPCFNQTTKKASRKLIIIISICRIMPLITLIFMLFAFYYRNKKAKPNPQISLISEQYTRVSYAELVNATNGFASDNLIGAGSFGSVYKGRMTNNDQQVVAVKVLNLTQRGASQSFMAECETLRCVRHRNLVKILTVCSSIDFQGNEFKAIVYEYLPNGNLDQWLHPNIMGQKYGIGNEVSIQGDVYSYGILLLEMFTRKRPTDDEFGEAVGLRKYVQMALPDNAANVLDQQLLPETEDGGAIKSNSYNGKDLRITCVTSVMRIGISCSEEAPTDRVQIGDALKELQAIRDKFEKHVSNEGTSSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.037323 | 0.000000 | 0.092691 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0215700 | RBH | 0.380405 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12420 | RBH | 0.255261 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0215700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025000 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008910 | RBH | 0.000000 | 1.128539 | 0.483964 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008720 | RBH | 1.696330 | 0.604354 | 1.075091 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008600 | RBH | 0.036089 | 0.019091 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008730 | RBH | 0.000000 | 0.0 | 1.459673 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0108700 | RBH | 0.0080025 | 0.090702 | 0.028804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024560 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0112500 | RBH | 0.397434 | 11.5171975 | 1.5174025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008660 | RBH | 0.0 | 1.023732 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008960 | RBH | 1.380388 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008940 | RBH | 0.062462 | 0.242692 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008710 | RBH | 0.231703 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025060 | SBH | 0.363832 | 0.0 | 1.463381 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0008750 | RBH | 0.0 | 0.000000 | 0.531426 |
