Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0048140 | OGI:01125790 | 13/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:43042565-43044265 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatctatgttgcatctggtcctcaatacgactccaagatggctccttcactattcctttacctgacatggtctccctgatctcagcagcattaccccaacggccatcaccagcaaaggcatttgataactgaacatgaacagatgagtcatgaggatttagctccattagacgcttggacactcggattgcaatctcaaggttcccatgaatctggcaggcactgagcagagctctgtatactgatgcaccaggttttataggcatgccattaatcaagtattcagcttcattgagatagcctgctcgaccaagaagatcaaccatacaagcatagtgttttgtccttgctcccacaagataccctttatctttcatcaagttgaaatactcgagccctttatctaccaagccaacatggctgcaagctgtgaggactgacaagaaggttatgtggtctggctgaacatgtagcctcctcatttgttcaaacatctcaactacctcctttccatggccatgttgagcacatcccgacattagtgaattccaagaaaccaaattgggtgcttccattgaaatgaaaacgccattggattcccctattgcaccatgtctggcatacatggaaatcaggctgttctggacatccacaacagaatcatatccaatcttcagaataagagtatgaacctgcctaccctctagcaacgaggatgagctacctatagccttcaatatgctggcaaaggtgaacacatccatatcagtgccgtgccttctcatttccaagaagtgttgaaacgcctctttacctcttcccagacaggagagcccagaaatgacggaattgaatgatacctgatcttgacatgaaacagacatctgcaccttgacaaaatcttcccaaatgccgcacttggagtacattgtcacaagagcagacagaacaaacggatcgtgctccaagcccttcttaagcactgcgcaatgaacttgcttcccatgatctatgtcctccgggctcgcgaatgagctgagaaggctgctgtacgtcatcaagtttggtgccacaccagagcgttccatctccctgaccaacagcacggcgtcatgaggccttctgcttagaacgaaccctgtcacgagcgccgtgaaagtggccacgttcttctcttccatctccccAaacacctgctgcgccgcgcccaaacgacggcatttggcgtacatgtccaccaaggcagtgccgacgacgacagaagcaaagaagccacacctgaggccaacggagtgcagcattgctccagcaccggcattctccagcctgacgcaggcgaccaggacgctggacacggacgacgcggtgggggagacgccggcgcgcaccatgcgcgcgaaggccgcgacggcgaggtcgggcgcggtcgactgcgcgtggccgtagatgagcgtgttccaggtgacggcggtccttaggggcatttggtcgaacaggtgctgtgcctcacggaggcggcgggatcggcagtagaaggcgaggagcgcggtgttggcgaaggggttggaggcggagaaaccgagtttggtggcggcggcatggcactggtcggcggcggaggggcgcggcggctgggcggcgaggagttggacgaaggcccgcggggttcgcgactcggcgtggcggaggaagccgcgcat
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| CDS seq | atgcgcggcttcctccgccacgccgagtcgcgaaccccgcgggccttcgtccaactcctcgccgcccagccgccgcgcccctccgccgccgaccagtgccatgccgccgccaccaaactcggtttctccgcctccaaccccttcgccaacaccgcgctcctcgccttctactgccgatcccgccgcctccgtgaggcacagcacctgttcgaccaaatgcccctaaggaccgccgtcacctggaacacgctcatctacggccacgcgcagtcgaccgcgcccgacctcgccgtcgcggccttcgcgcgcatggtgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggagaatgccggtgctggagcaatgctgcactccgttggcctcaggtgtggcttctttgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccgtcgtttgggcgcggcgcagcaggtgttTggggagatggaagagaagaacgtggccactttcacggcgctcgtgacagggttcgttctaagcagaaggcctcatgacgccgtgctgttggtcagggagatggaacgctctggtgtggcaccaaacttgatgacgtacagcagccttctcagctcattcgcgagcccggaggacatagatcatgggaagcaagttcattgcgcagtgcttaagaagggcttggagcacgatccgtttgttctgtctgctcttgtgacaatgtactccaagtgcggcatttgggaagattttgtcaaggtgcagatgtctgtttcatgtcaagatcaggtatcattcaattccgtcatttctgggctctcctgtctgggaagaggtaaagaggcgtttcaacacttcttggaaatgagaaggcacggcactgatatggatgtgttcacctttgccagcatattgaaggctataggtagctcatcctcgttgctagagggtaggcaggttcatactcttattctgaagattggatatgattctgttgtggatgtccagaacagcctgatttccatgtatgccagacatggtgcaataggggaatccaatggcgttttcatttcaatggaagcacccaatttggtttcttggaattcactaatgtcgggatgtgctcaacatggccatggaaaggaggtagttgagatgtttgaacaaatgaggaggctacatgttcagccagaccacataaccttcttgtcagtcctcacagcttgcagccatgttggcttggtagataaagggctcgagtatttcaacttgatgaaagataaagggtatcttgtgggagcaaggacaaaacactatgcttgtatggttgatcttcttggtcgagcaggctatctcaatgaagctgaatacttgattaatggcatgcctataaaacctggtgcatcagtatacagagctctgctcagtgcctgccagattcatgggaaccttgagattgcaatccgagtgtccaagcgtctaatggagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggagaccatgtcaggtaaaggaatagtgaaggagccatcttggagtcgtattgaggaccagatgcaacatagataa
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| Protein seq | MRGFLRHAESRTPRAFVQLLAAQPPRPSAADQCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPSWSRIEDQMQHR |
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| Function | Pentatricopeptide repeat-containing protein At1g11290, chloroplastic [UniProtKB/Swiss-Prot:Q3E6Q1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0048140 | OsKeNa_01g0048140.01 | Chr01 | 43042565 | 43044265 | - | NAM | ||
| CDS seq | atgcgcggcttcctccgccacgccgagtcgcgaaccccgcgggccttcgtccaactcctcgccgcccagccgccgcgcccctccgccgccgaccagtgccatgccgccgccaccaaactcggtttctccgcctccaaccccttcgccaacaccgcgctcctcgccttctactgccgatcccgccgcctccgtgaggcacagcacctgttcgaccaaatgcccctaaggaccgccgtcacctggaacacgctcatctacggccacgcgcagtcgaccgcgcccgacctcgccgtcgcggccttcgcgcgcatggtgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggagaatgccggtgctggagcaatgctgcactccgttggcctcaggtgtggcttctttgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccgtcgtttgggcgcggcgcagcaggtgttTggggagatggaagagaagaacgtggccactttcacggcgctcgtgacagggttcgttctaagcagaaggcctcatgacgccgtgctgttggtcagggagatggaacgctctggtgtggcaccaaacttgatgacgtacagcagccttctcagctcattcgcgagcccggaggacatagatcatgggaagcaagttcattgcgcagtgcttaagaagggcttggagcacgatccgtttgttctgtctgctcttgtgacaatgtactccaagtgcggcatttgggaagattttgtcaaggtgcagatgtctgtttcatgtcaagatcaggtatcattcaattccgtcatttctgggctctcctgtctgggaagaggtaaagaggcgtttcaacacttcttggaaatgagaaggcacggcactgatatggatgtgttcacctttgccagcatattgaaggctataggtagctcatcctcgttgctagagggtaggcaggttcatactcttattctgaagattggatatgattctgttgtggatgtccagaacagcctgatttccatgtatgccagacatggtgcaataggggaatccaatggcgttttcatttcaatggaagcacccaatttggtttcttggaattcactaatgtcgggatgtgctcaacatggccatggaaaggaggtagttgagatgtttgaacaaatgaggaggctacatgttcagccagaccacataaccttcttgtcagtcctcacagcttgcagccatgttggcttggtagataaagggctcgagtatttcaacttgatgaaagataaagggtatcttgtgggagcaaggacaaaacactatgcttgtatggttgatcttcttggtcgagcaggctatctcaatgaagctgaatacttgattaatggcatgcctataaaacctggtgcatcagtatacagagctctgctcagtgcctgccagattcatgggaaccttgagattgcaatccgagtgtccaagcgtctaatggagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggagaccatgtcaggtaaaggaatagtgaaggagccatcttggagtcgtattgaggaccagatgcaacatagataa
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| Protein seq | MRGFLRHAESRTPRAFVQLLAAQPPRPSAADQCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPSWSRIEDQMQHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.375122 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0260000 | SBH | 0.425412 | 0.0 | 0.521605 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60250 | SBH | 0.140958 | 0.047977 | 0.043763 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0818200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048650 | RBH | 0.169006 | 3.085399 | 0.372845 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000980 | SBH | 0.0 | 0.425736 | 0.358416 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048530 | RBH | 1.144425 | 0.000000 | 1.686089 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048070 | RBH | 0.038038 | 0.086694 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047610 | RBH | 0.615425 | 0.000000 | 1.250277 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0705000 | SBH | 2.4975525 | 5.581674 | 7.46054 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047080 | RBH | 0.055563 | 0.093984 | 0.237996 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0509300 | SBH | 0.1036825 | 0.662548 | 0.542317 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0047750 | RBH | 0.0 | 0.092052 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047810 | RBH | 0.216367 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047560 | RBH | 0.034705 | 0.815209 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047890 | RBH | 0.112620 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047640 | RBH | 0.112868 | 0.0 | 1.384330 |
