Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0047840 | OGI:01125790 | 13/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:44035177-44037960 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaagccactcggtcttgacgctcctcgatttgcttggtacaaagtcctaccagctcttccctcggtctatggaagttcccctgcaaaactgggtccaaattatgatgtgcaggaaacaataacaaaagcacatatcaaacaagaaaatgcaccgttggtactaagctatatatgggtcaaataagtactggcgccttccactctttcttaaactcttttaagaaaaactcttatctttgtcttctcacagaacattgcaaaccaaaaactacaaggggtgggttcaatgtgcagttttaagaaaaactcttatctttgtcttctcacagaacattgcaaaccgaaaactacaaggggtgagttcaatgtgcagttttaagaaaaataaccctttatctttgtcttctcacagaacattgcaagctgaaaactacaagggatgagttcaatgtgcagtgaacaaaaggattgcatggatagaaccttatgctatatcatgcaacaatagcacagcaagttaGgatgAaacattttgctggttctattgtaaagggcctacaattagctcacagcctcacatacagccatagaggcctgcaaaggccctgtAaaaaaagattgAaaaaaaagagttaattttatgtacagaaggaagtggatgtttcttgtttaactgAaatacactttctgttatgcacttatgcttatgcaaaacaagaaataggctaaagggttcattacatcaggttaatttaggctccagttatacggcgatcagttatcttgcttccagtagaactcatcgttataacaccagaattatccaatctggtgctgctttactcactaatgataaacgcaatgaggttcatactaaagcagaaggaagtttaactgtttaaacctccaaaaatttacgagcaggtagtcaaatctatcactaactttggcataccttttcttacacatatttctagcttgcttcgttcggtaagcatcaccctcagagcttcggtctataattcagttctaggtagcaaccaagacagtggcatgcatcttgtaagcacaggctgcttattatctatgttgcatctggtcctcaatacgactccaagatggctccttcactattcctttacctgacatggtctccctgatctcagcagcattaccccaacggccatcaccagcaaaggcatttgataactgaacatgaacagatgagtcatgaggatttagctccattagacgcttggacactcggattgcaatctcaaggttcccatgaatctggcaggcactgagcagagctctatatactgatgcaccaggttttataggcatgccattaatcaagtattcagcttcattgagatagcctgctcgaccaagaagatcaaccatacaagcatagtgttttgtccttgctcccacaagataccctttatctttcatcaagttgaaatactcgagccctttatctaccaagccaacatggctgcaagctgtgaggactgacaagaaggttatgtggtctggctgaacatgtagcctcctcatttgttcaaacatctcaactacctcctttccatggccatgttgagcacatcccgacattagtgaattccaagaaaCCaaattgggtgcttccattgaaatgaaaacgccattggattcccctattgcaccatgtctggcatacatggaaatcaggctgttctggacatccacaacagaatcatatccaatcttcagaataagagtatgaacctgcctaccctctagcaacgaggatgagctacctatagccttcaatatgctggcaaaggtgaacacatccatatcagtgccgtgccttctcatttccaagaagtgttgaaacgcctctttacctcttcccagacaggagagcccagaaatgacggaattgaatgatacctgatcttgacatgaaACaCAGACATCTGCACCTTGACAAAATCTTCCCAAATGCCGCACTTGGAGTACATTGTCACAAGAGCAGACAGAACAAACGGATCGTGCTCCAAGCCCTTCTTAAGCACTGCGCAATGAACTTGCTTCCCATGATCTATGTCCTCCGGGCTCGCGAATGAGCTGAGAAGGCTGCTGTACGTCATCAAGTTTGGTGCCACACCAGAGCGTTCCATCTCCCTGACCAACAGCACGGCGTCATGAGGCCTTCTGCTTAGAACGAACCCTGTCACGAGCGCCGTGAAAGTGGCCACGTTCTTCTCTTCCATCTCCCCAAACACCTGCTgcgccgcgcccaaacgacggcatttggcgtacatgtccaccaaggcagtgccgacgacgacagaagcaaagaagccacacctgaggccaacggagtgcagcattgctccagcaccggcattctccagcctgacgcaggcgaccaggacgctggacacggacgacgcggtgggggagacgccggcgcgcaccatgcgcgcgaaggccgcgacggcgaggtcgggcgcggtcgactgcgcgtggccgtagatgagcgtgttccaggtgacggcggtccttaggggcatttggtcgaacaggtgctgtgcctcacggaggcggcgggatcggcagtagaaggcgaggagcgcggtgttggcgaaggggttggaggcggagaaaccgagtttggtggcggcggcatggcactggtcggcggcggaggggcgcggcggctgggcggcgaggagttggacgaaggcccgcggggttcgcgactcggcgtggcggaggaagccgcgcat
More
|
||||||||||
| CDS seq | atgcgcggcttcctccgccacgccgagtcgcgaaccccgcgggccttcgtccaactcctcgccgcccagccgccgcgcccctccgccgccgaccagtgccatgccgccgccaccaaactcggtttctccgcctccaaccccttcgccaacaccgcgctcctcgccttctactgccgatcccgccgcctccgtgaggcacagcacctgttcgaccaaatgcccctaaggaccgccgtcacctggaacacgctcatctacggccacgcgcagtcgaccgcgcccgacctcgccgtcgcggccttcgcgcgcatggtgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggagaatgccggtgctggagcaatgctgcactccgttggcctcaggtgtggcttctttgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccgtcgtttgggcgcggcgcAGCAGGTGTTTGGGGAGATGGAAGAGAAGAACGTGGCCACTTTCACGGCGCTCGTGACAGGGTTCGTTCTAAGCAGAAGGCCTCATGACGCCGTGCTGTTGGTCAGGGAGATGGAACGCTCTGGTGTGGCACCAAACTTGATGACGTACAGCAGCCTTCTCAGCTCATTCGCGAGCCCGGAGGACATAGATCATGGGAAGCAAGTTCATTGCGCAGTGCTTAAGAAGGGCTTGGAGCACGATCCGTTTGTTCTGTCTGCTCTTGTGACAATGTACTCCAAGTGCGGCATTTGGGAAGATTTTGTCAAGGTGCAGATGTCTGtGTttcatgtcaagatcagagctctgctcagtgcctgccagattcatgggaaccttgagattgcaatccgagtgtccaagcgtctaatggagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggagaccatgtcagggcctttgcaggcctctatggctgggaacttccatagaccgagggaagagctggtaggactttgtaccaagcaaatcgaggagcgtcaagaccgagtggcttag
More
|
||||||||||
| Protein seq | MRGFLRHAESRTPRAFVQLLAAQPPRPSAADQCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVFHVKIRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGPLQASMAGNFHRPREELVGLCTKQIEERQDRVA |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At2g33760 [UniProtKB/Swiss-Prot:P93011] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0047840 | OsGoSa_01g0047840.01 | Chr01 | 44035177 | 44037960 | - | NAM | ||
| CDS seq | atgcgcggcttcctccgccacgccgagtcgcgaaccccgcgggccttcgtccaactcctcgccgcccagccgccgcgcccctccgccgccgaccagtgccatgccgccgccaccaaactcggtttctccgcctccaaccccttcgccaacaccgcgctcctcgccttctactgccgatcccgccgcctccgtgaggcacagcacctgttcgaccaaatgcccctaaggaccgccgtcacctggaacacgctcatctacggccacgcgcagtcgaccgcgcccgacctcgccgtcgcggccttcgcgcgcatggtgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggagaatgccggtgctggagcaatgctgcactccgttggcctcaggtgtggcttctttgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccgtcgtttgggcgcggcgcAGCAGGTGTTTGGGGAGATGGAAGAGAAGAACGTGGCCACTTTCACGGCGCTCGTGACAGGGTTCGTTCTAAGCAGAAGGCCTCATGACGCCGTGCTGTTGGTCAGGGAGATGGAACGCTCTGGTGTGGCACCAAACTTGATGACGTACAGCAGCCTTCTCAGCTCATTCGCGAGCCCGGAGGACATAGATCATGGGAAGCAAGTTCATTGCGCAGTGCTTAAGAAGGGCTTGGAGCACGATCCGTTTGTTCTGTCTGCTCTTGTGACAATGTACTCCAAGTGCGGCATTTGGGAAGATTTTGTCAAGGTGCAGATGTCTGtGTttcatgtcaagatcagagctctgctcagtgcctgccagattcatgggaaccttgagattgcaatccgagtgtccaagcgtctaatggagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggagaccatgtcagggcctttgcaggcctctatggctgggaacttccatagaccgagggaagagctggtaggactttgtaccaagcaaatcgaggagcgtcaagaccgagtggcttag
More
|
|||||||
| Protein seq | MRGFLRHAESRTPRAFVQLLAAQPPRPSAADQCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVFHVKIRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGPLQASMAGNFHRPREELVGLCTKQIEERQDRVA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0977400 | SBH | 0.275101 | 0.444914 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g74600 | SBH | 0.194314 | 0.264258 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0355100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048650 | RBH | 0.169006 | 3.085399 | 0.372845 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048140 | RBH | 0.0 | 0.0 | 0.375122 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048530 | RBH | 1.144425 | 0.000000 | 1.686089 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048070 | RBH | 0.038038 | 0.086694 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047610 | RBH | 0.615425 | 0.000000 | 1.250277 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0705000 | SBH | 2.4975525 | 5.581674 | 7.46054 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047080 | RBH | 0.055563 | 0.093984 | 0.237996 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0711700 | SBH | 0.519945 | 0.58074 | 2.3387015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0047750 | RBH | 0.0 | 0.092052 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000960 | RBH | 0.800441 | 2.501675 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047810 | RBH | 0.216367 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047560 | RBH | 0.034705 | 0.815209 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047890 | RBH | 0.112620 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047640 | RBH | 0.112868 | 0.0 | 1.384330 |
