Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0048530 | OGI:01125790 | 13/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:43898099-43900880 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaagccactcggtcttgacgctcctcgatttgcttggtacaaagtcctaccagctcttccctcggtctatggaagttcccctgcaaaactgggtccaaattatgatgtgcaggaaacaataacaaaagcacatatcaaacaagaaaatgcaccgttggtactaagctatatatgggtcaaataagtactggcgccttccactctttcttaaactcttttaagaaaaactcttatctttgtcttctcacagaacattgcaaaccaaaaactacaaggggtgggttcaatgtgcagttttaagaaaaactcttatctttgtcttctcacagaacattgcaaaccgaaaactacaaggggtgagttcaatgtgcagttttaagaaaaataactctttatctttgtcttctcacagaacattgcaagctgaaaactacaagggatgagttcaatgtgcagtgaacaaaaggattgcatggatagaaccttatgctatatcatgcaacaatagcacagcaagttaggatgaaacattttgctggttctattgtaaagggcctacaattagctcacagcctcacatacagccatagaggcctgcaaaggccctgtaaaaaaagattgaaaaaaaagagttaattttatgtacagaaggaagtggatgtttcttgtttaactgaaatacactttctgttatgcacttatgcttatgcaaaacaagaaataggctaaagggttcattacatcaggttaatttaggctccagttatacggcgatcagttatcttgcttccagtagaactcatcgttataacaccagaattatccaatctggtgctgctttactcactaatgataaacgcaatgaggttcatactaaagcagaaggaagtttaactgtttaaacctccaaaaatttacgagcaggtagtcaaatctatcactaactttggcataccttttcttacacatatttctagcttgcttcgttcggtaagcatcaccctcagagcttcggtctataattcagttctaggtagcaaccaagacagtggcatgcatcttgtaagcacaggctgcttattatctatgttgcatctggtcctcaatacgactccaagatggctccttcactattcctttacctgacatggtctccctgatctcagcagcattaccccaacggccatcaccagcaaaggcatttgataactgaacatgaacagatgagtcatgaggatttagctccattagacgcttggacactcggattgcaatctcaaggttcccatgaatctggcaggcactgagcagagctctgtatactgatgcaccaggttttataggcatgccattaatcaagtattcagcttcattgagatagcctgctcgaccaagaagatcaaccatacaagcatagtgttttgtccttgctcccacaagataccctttatctttcatcaagttgaaatactcgagccctttatctaccaagccaacatggctgcaagctgtgaggactgacaagaaggttatgtggtctggctgaacatgtagcctcctcatttgttcaaacatctcaactacctcctttccatggccatgttgagcacatcccgacattagtgaattccaagaaaccaaattgggtgcttccattgaaatgaaaacgccattggattcccctattgcaccatgtctggcatacatggaaatcaggctgttctggacatccacaacagaatcatatccaatcttcagaataagagtatgaacctgcctaccctctagcaacgaggatgagctacctatagccttcaatatgctggcaaaggtgaacacatccatatcagtgccgtgccttctcatttccaagaagtgttgaaacgcctctttacctcttcccagacaggagagcccagaaatgacggaattgaatgatacctgatcttgacatgaaacagacatctgcaccttgacaaaatcttcccaaatgccgcacttggagtacattgtcacaagagcagacagaacaaacggatcgtgctccaagcccttcttaagcactgcgcaatgaacttgcttcccatgatctatgtcctccgggctcgcgaatgagctgagaaggctgctgtacgtcatcaagtttggtgccacaccagagcgttccatctccctgaccaacagcacggcgtcatgaggccttctgcttagaacgaaccctgtcacgagcgccgtgaaagtggccacgttcttctcttccatctccccaaacacctgctgcgccgcgcccaaacgacggcatttggcgtacatgtccaccaaggcagtgccgacgacgacagaagcaaagaagccacacctgaggccaacggagtgcagcattgctccagcaccggcattctccagcctgacgcaggcgaccaggacgctggacacggacgacgcggtgggggagacgccggcgcgcaccatgcgcgcgaaggccgcgacggcgaggtcgggcgcggtcgactgcgcgtggccgtagatgagcgtgttccaggtgacggcggtccttaggggcatttggtcgaacaggtgctgtgcctcacggaggcggcgggatcggcagtagaaggcgaggagcgcggtgttggcgaaggggttggaggcggagaaaccgagtttggtggcggcggcatggcactggtcggcggcagaggggcgcggcggctgggcggcgaggagttggacgaaggcccgcggggttcgcgactcggcgtggcggaggaagtcgcgcat
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| CDS seq | atgcgcgacttcctccgccacgccgagtcgcgaaccccgcgggccttcgtccaactcctcgccgcccagccgccgcgcccctctgccgccgaccagtgccatgccgccgccaccaaactcggtttctccgcctccaaccccttcgccaacaccgcgctcctcgccttctactgccgatcccgccgcctccgtgaggcacagcacctgttcgaccaaatgcccctaaggaccgccgtcacctggaacacgctcatctacggccacgcgcagtcgaccgcgcccgacctcgccgtcgcggccttcgcgcgcatggtgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggagaatgccggtgctggagcaatgctgcactccgttggcctcaggtgtggcttctttgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccgtcgtttgggcgcggcgcagcaggtgtttggggagatggaagagaagaacgtggccactttcacggcgctcgtgacagggttcgttctaagcagaaggcctcatgacgccgtgctgttggtcagggagatggaacgctctggtgtggcaccaaacttgatgacgtacagcagccttctcagctcattcgcgagcccggaggacatagatcatgggaagcaagttcattgcgcagtgcttaagaagggcttggagcacgatccgtttgttctgtctgctcttgtgacaatgtactccaagtgcggcatttgggaagattttgtcaaggtgcagatgtctgtttcatgtcaagatcaggtatcattcaattccgtcatttctgggctctcctgtctgggaagaggtaaagaggcgtttcaacacttcttggaaatgagaaggcacggcactgatatggatgtgttcacctttgccagcatattgaaggctataggctatctcaatgaagctgaatacttgattaatggcatgcctataaaacctggtgcatcagtatacagagctctgctcagtgcctgccagattcatgggaaccttgagattgcaatccgagtgtccaagcgtctaatggagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggagaccatgtcagggcctttgcaggcctctatggctgggaacttccatagaccgagggaagagctggtaggactttgtaccaagcaaatcgaggagcgtcaagaccgagtggcttag
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| Protein seq | MRDFLRHAESRTPRAFVQLLAAQPPRPSAADQCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGPLQASMAGNFHRPREELVGLCTKQIEERQDRVA |
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| Function | Pentatricopeptide repeat-containing protein At3g24000, mitochondrial [UniProtKB/Swiss-Prot:Q9LIQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0048530 | OsCMeo_01g0048530.01 | Chr01 | 43898099 | 43900880 | - | NAM | ||
| CDS seq | atgcgcgacttcctccgccacgccgagtcgcgaaccccgcgggccttcgtccaactcctcgccgcccagccgccgcgcccctctgccgccgaccagtgccatgccgccgccaccaaactcggtttctccgcctccaaccccttcgccaacaccgcgctcctcgccttctactgccgatcccgccgcctccgtgaggcacagcacctgttcgaccaaatgcccctaaggaccgccgtcacctggaacacgctcatctacggccacgcgcagtcgaccgcgcccgacctcgccgtcgcggccttcgcgcgcatggtgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggagaatgccggtgctggagcaatgctgcactccgttggcctcaggtgtggcttctttgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccgtcgtttgggcgcggcgcagcaggtgtttggggagatggaagagaagaacgtggccactttcacggcgctcgtgacagggttcgttctaagcagaaggcctcatgacgccgtgctgttggtcagggagatggaacgctctggtgtggcaccaaacttgatgacgtacagcagccttctcagctcattcgcgagcccggaggacatagatcatgggaagcaagttcattgcgcagtgcttaagaagggcttggagcacgatccgtttgttctgtctgctcttgtgacaatgtactccaagtgcggcatttgggaagattttgtcaaggtgcagatgtctgtttcatgtcaagatcaggtatcattcaattccgtcatttctgggctctcctgtctgggaagaggtaaagaggcgtttcaacacttcttggaaatgagaaggcacggcactgatatggatgtgttcacctttgccagcatattgaaggctataggctatctcaatgaagctgaatacttgattaatggcatgcctataaaacctggtgcatcagtatacagagctctgctcagtgcctgccagattcatgggaaccttgagattgcaatccgagtgtccaagcgtctaatggagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggagaccatgtcagggcctttgcaggcctctatggctgggaacttccatagaccgagggaagagctggtaggactttgtaccaagcaaatcgaggagcgtcaagaccgagtggcttag
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| Protein seq | MRDFLRHAESRTPRAFVQLLAAQPPRPSAADQCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGPLQASMAGNFHRPREELVGLCTKQIEERQDRVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.144425 | 0.000000 | 1.686089 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0355100 | SBH | 0.311905 | 0.230367 | 0.190584 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41650 | SBH | 1.438992 | 1.822118 | 0.354289 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0977400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048650 | RBH | 0.169006 | 3.085399 | 0.372845 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048140 | RBH | 0.0 | 0.0 | 0.375122 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000560 | RBH | 0.276210 | 0.0 | 0.269943 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048070 | RBH | 0.038038 | 0.086694 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047610 | RBH | 0.615425 | 0.000000 | 1.250277 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0705000 | SBH | 2.4975525 | 5.581674 | 7.46054 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047080 | RBH | 0.055563 | 0.093984 | 0.237996 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0711700 | SBH | 0.519945 | 0.58074 | 2.3387015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0047750 | RBH | 0.0 | 0.092052 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047810 | RBH | 0.216367 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047560 | RBH | 0.034705 | 0.815209 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047890 | RBH | 0.112620 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047640 | RBH | 0.112868 | 0.0 | 1.384330 |
