Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0260000 | OGI:01027370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:8733343-8734486 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACCAAATGATATCACTTTTCTTGCAGTCCTATCGGTATGTAGCCATGTTGGACTGACTGATTTGGGCCGCTGGTACTTCAAAACTATGGTGTCTCAGTACAAGATTAAGCCACGAGTTGAGCACTACGGGTGCATGATTGATCTACTTGGCCGTGCAGGTTGTTTGATGGAAGCTCGTGGTTTAATTCAGGATATGCCTTTCAAGGCAAATGCAGCAATATGGGGAGCTCTTCTTGCTGCTGCTCGTACTCACGGTGATACAGAGCTTGGAGAACAAGCCTTGTTGCATCTAATTGAGCTCGAACCTCACAACAGTGGGAATTATATTCTCCTATCTAATATATACGCAGAACAGGAGAGGTGGGATGCTGTGAGAGAACTTCGAATATCAATGAGAGATAGAGGATTAAGAAATGTGCCAGGGGCAAGTTCTATTGATGTTGATGGCATGGTTCATGAGTTCACTTCCAGAGATGGCTCTCATCCTTCCTTGCATAAGATACGTGAAGTTCTATGTGCAATTAACAGTAACATAAAATCCGTCGGTCATATTGCGCTGCTCCCTGAAAGTTTGCATGATGTTGAAGAAGGGTGAGATGAACATCATCTAGTGTGAGCATTGTTCCATCACATGCCAAGTGTGCACAATTGAAGTTTTGTTAAGATTGATGGCATGGTTTACAAGTTCTCCTAGAGGTTAAACCCCATCCTTCCAGTCAGACTCAGACTGATACAGAAGATACCTGATGCAATGCTTCATACTGAATCATTGTTTCCAGCAAAACAAAAGTGATCACTATGCCTTAATGCCTTGATGGTAAAACAGATTCCAATGATTATGCTCATATTCTACGAAGCACTTGTTTGTATTGAAGGAGGACAACATACTTTGGTACACTCAGAAAGAAACATATTTGCCTTGTGTGATAAGTGAACATAGCTGATAATTTAGAGAATGTTTTAAAGGAGTAGTTTTTCGCCAACTCATTGCATGCACAACAGCACAAGGTTGAAACTCAAGAGTAGATTCTTGATTGACTAGTTGTTTGATGTGAGATTTAGTCTTCTTATAGGATAAAAGTTGGCCAAGCCTTTCTTCTTCAGTTAAAGGTACGGGCAACATCTAAACAGAAGTTTTTTTTT
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| CDS seq | CCAAATGATATCACTTTTCTTGCAGTCCTATCGGTATGTAGCCATGTTGGACTGACTGATTTGGGCCGCTGGTACTTCAAAACTATGGTGTCTCAGTACAAGATTAAGCCACGAGTTGAGCACTACGGGTGCATGATTGATCTACTTGGCCGTGCAGGTTGTTTGATGGAAGCTCGTGGTTTAATTCAGGATATGCCTTTCAAGGCAAATGCAGCAATATGGGGAGCTCTTCTTGCTGCTGCTCGTACTCACGGTGATACAGAGCTTGGAGAACAAGCCTTGTTGCATCTAATTGAGCTCGAACCTCACAACAGTGGGAATTATATTCTCCTATCTAATATATACGCAGAACAGGAGAGGTGGGATGCTGTGAGAGAACTTCGAATATCAATGAGAGATAGAGGATTAAGAAATGTGCCAGGGGCAAGTTCTATTGATGTTGATGGCATGGTTCATGAGTTCACTTCCAGAGATGGCTCTCATCCTTCCTTGCATAAGATACGTGAAGTTCTATGTGCAATTAACAGTAACATAAAATCCGTCGGTCATATTGCGCTGCTCCCTGAAAGTTTGCATGATGTTGAAGAAGGGTGA
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| Protein seq | PNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVDGMVHEFTSRDGSHPSLHKIREVLCAINSNIKSVGHIALLPESLHDVEEG |
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| Function | Pentatricopeptide repeat-containing protein At5g56310 [UniProtKB/Swiss-Prot:Q9FMA1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0260000 | OsNip_01t0260000-01 | Chr01 | 8733343 | 8734486 | + | RAP2018-11-26 | ||
| CDS seq | CCAAATGATATCACTTTTCTTGCAGTCCTATCGGTATGTAGCCATGTTGGACTGACTGATTTGGGCCGCTGGTACTTCAAAACTATGGTGTCTCAGTACAAGATTAAGCCACGAGTTGAGCACTACGGGTGCATGATTGATCTACTTGGCCGTGCAGGTTGTTTGATGGAAGCTCGTGGTTTAATTCAGGATATGCCTTTCAAGGCAAATGCAGCAATATGGGGAGCTCTTCTTGCTGCTGCTCGTACTCACGGTGATACAGAGCTTGGAGAACAAGCCTTGTTGCATCTAATTGAGCTCGAACCTCACAACAGTGGGAATTATATTCTCCTATCTAATATATACGCAGAACAGGAGAGGTGGGATGCTGTGAGAGAACTTCGAATATCAATGAGAGATAGAGGATTAAGAAATGTGCCAGGGGCAAGTTCTATTGATGTTGATGGCATGGTTCATGAGTTCACTTCCAGAGATGGCTCTCATCCTTCCTTGCATAAGATACGTGAAGTTCTATGTGCAATTAACAGTAACATAAAATCCGTCGGTCATATTGCGCTGCTCCCTGAAAGTTTGCATGATGTTGAAGAAGGGTGA
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| Protein seq | PNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVDGMVHEFTSRDGSHPSLHKIREVLCAINSNIKSVGHIALLPESLHDVEEG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.425412 | 0.0 | 0.521605 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g15530 | RBH | 0.159763 | 0.0 | 0.074566 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0260000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038270 | SBH | 0.0 | 1.089302 | 0.332134 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037740 | SBH | 0.0 | 0.0 | 0.117921 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038170 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037610 | SBH | 0.029603 | 0.024486 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023230 | SBH | 4.119583 | 0.800810 | 4.901930 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0145800 | RBH | 0.7937685 | 3.5884925 | 0.491621 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023140 | SBH | 0.264517 | 0.0 | 0.402691 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0144400 | RBH | 0.6684385 | 1.9453465 | 2.3093475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023140 | SBH | 0.393105 | 2.367584 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023380 | SBH | 3.686258 | 4.948467 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015920 | SBH | 0.189971 | 0.140749 | 0.238049 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010740 | RBH | 0.0 | 1.848892 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010890 | RBH | 0.204892 | 0.728427 | 0.708902 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010750 | RBH | 0.521408 | 0.0 | 0.523276 |
