Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0030720 | OGI:01040070 | 7/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:29657957-29663145 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaataccttgatatcatttccctgtggatggagaaaagtaaaagtgaaaatttaaaatttggtataacaaataggagaatagatggaaaaaaattcctgaactacatcaatatcgtgttactttcgcaataaaatcatagatgggataccatttctttagtaactaatcacgtgcccatgtgttgcggcagaaatttttttctgaaatttcacgattcatcattgagaaacactcaagtttaaaatttgacattgacaaaagcgagttctaggtgcggaaaagattcccaccagatggcataaactaatttgttctcctaggaaagaaaatcaacatatggattcgccctggagctatttgtaaactcagatatatatgaaatgaatagaagggccaggtattgcagatttgtagggaataaagatggagatagaagagcatgacattttcaccagagttaggcgataccttcagggctctggctttatcatctttgataggagttaaagttcaaaatttcaatatatacttcacttctttgcaccttttatttttccatttgatcatggtttcagcgcaaatagccaaaacccacacagggagtatgaaattaatttgcttgaacaagcaagcacttccccttgtgtttcataattgcttggagtgcaagttcgtgaatcttgactttatctaaaatttgtcatggtaccaaaaaaaaaaagatggcagtggcacaagctactattcttctaaggccatccatcatttatggtacattcatatggttctgactcttatatgattatatgattgcaagactttctaactcattaaattagcatagaaaagatacatgattttcaggggggaaaaggtgccaaaaatatagattttgtatatgcataaattaagctgtacaaaggttggatgaactaaaagtaaaatgatatagttacattgtgtatgcgtactgtaaactaaaatgcaatcttaaaaataaaatcatgtttaccttcgagccagtgtcacatggatcaaattcaatctttcagctcgacaacaatatgaccccacttttttttttgaaagttgatccaacttacgagcaatttaaatgaaaattttcaacccttgcgctgtcattcccttgcagcactcaacatcatccatcagatcatgaaggagtttttttttctctaaatcaaacaatgtaaaacgacagggaggcagtgcctacaatgtacagagaaatttatgtcacacatcaagcaagcaataatttgatctggatattctcactcacaatcaatacaaatgcaaatgcatttttttatcgtactatcatccccaactacacaatgccttgatgcattgtctcataattcacatggatagatggataagaaatctgcaaatgccaaaagcaacaccatgctaaaccttcaggttaaatccattgtcatccttcgctaaaaaaaaaatccatttacattcactgatttccattaatataaagtggtactaaactgatttccttgagcaaccccactttgggttgccgataattttaagtaatccacacttctatagtagttcctatgcatcaggtcagttttaaattatgagcttattcacaataaaaacatctctcagggtatgttgcaaaaaaaaaaaccttgtaaaaccaggcttcaggtattttactgcattttcttgaacctatcgaaacattagttttgctcacctagctgcagtgttataattaataacagcttactgtatgaagaataatactgcatgcttgtaaacctataattgaacattaatttgttaaattaaatagctcccacattcaacgattaaggggaatcaccaagtgcatttctggccaagaacttgatgctttttttttgattttccactgtaaagctggatgttatattagtttgaccagaatagagttaacataaggataacaaacatgaagcaggtcatgctcaagataactaacctctgttgcctcttcggtatggatatcttgctacgggttattccagccctaacacacataaaacataagaaaagagccaaaaacttatgaaactatttttcaatattatgcaggcaacacagacattagccatattttgcaggttacaaccataacaaaattccccattcatagccatcattcaatcacataaacatatgatcacctaattcataatatagcatccttagtgaaacaaaagaaatacagtagggcaacagaaccggtcaattgacaacaaaacacaatagaacataaccatcttccaattctgaggcatcatagatacaccaaatcactaacatgtcttgtgagaactgcataatcagccaaacaaaaatgttagtccagtatacatgattacaacaaagagatcaaagtaattggagctgtgacattatactactttacaccaactgatttttggtaactatataagcataagtatcatacctattcatgccaaaccatatagtccagctgcaatccaatcacggacagtgccaatatcatcatcggcagtagctgctaaccaatcttgcaacgggccaattggttgaccaggcgtgcgaaggtactggtactgcccaaacacattgtctccgtccatctcgggttcgttgttgtccatcgcgaaattatgcagcgcgaagcatgcgacaataatctttgattgcttctccataggatacaatggtatcccctttagaatcttccacttattctttaaaaccccaaatgagcgttcaaccacgttccgtagacaagaatggtggtagttaaaaatctcgcacagattttcaggacctttgccattaaattgcttcaaatggtacctagtcttgcgatatggggccatgtaaccctcgcgtagtgggtaaccagaatccactagatagtacttgcctagaaaatgaactaagtcatattttgtaatttaaaatgggaagcttcaatgtaatttaaactggatgtactcacctgggggtgggtgagggaaatggtcagcagtgttcactgcctccctgaaaacagccatgtcatgcgcagcccccctcttacccgtagcgacaaatgtaaaccgcatgcccatgtcgcatatagccaacacgttttggctggtgaaccccttcctgttaatgaaatcatcatgagtcggatcaaggactgtgactggaatgtaggttccatctatagctccaatacacccatcaaagtatggtgagaactggtgcaggttaggatgcacatatctaaagcttgggtcccttggcctaataatcctccgtgcaaaagataacatggcatctaagacttcgtcaaacttcctacttacggtgtccaatgaccgaccaaatcgatctgacatctgtctttgacattgtcttgtgccacaagcccataagaacatccctaaggcttcaatcgactcacaatgacgggtggattttagaccgtgttttgcaaccaatgttgtatgcaacaaatggaatgcagtaggccggagacggaaatttctgtagcacttgttactgtcagcaagattcagatctacccattgacgacccgtcacctccttgaagggcaaggtggcatctttcactccgcaaccacttgatcttgctgatgctactgctgctagcacaccgacagctgcacccatgtcccaccaggtagaccacccatcatccaaatgtgcagccgaggagcttgtgctgctcgaagtttcagaggtagacattctgcaaggaatgtactatgtttgagcaattcaacaaacaatatatgattttgcatatatcatagtttcttttacctagtattgacctccttgcctatcctttagcacctcttcattcagggaaacctacaacttatagaatgataatatcagttacaaaatgtatgcatgtacaaaatcaatgtagtgcatttttccagttgtacagcaggtgaggatgcagcatggttactcaattttcaagttaaaaaaataaagaaaaggcaactagatccaaatgacatgacaagctgaccgatacaaatttatatgataaaagtagcaaaggttctaatgcataacataaaaacatgccaaggtctaacaaccgattacataatgccatgtcatttggcgatgggtatattacaatcaaacactacatgtgacaacaagtgtagttcggtggcatcatggactagtatcactttttactagcattctcccaagtccatcggagccatgctttacgattctctgcggggtaaatgcacttaaaagctgcacgtcgtgcagctgacctaaataggtcagtagctatgaaatacaactcggatccttgagccacaccgtcctcttctacaaggtgcagcaattctttcatctcatcttgctctcccctgatcacactgctttcattcctactcctttcaagcatactctctgatatgcgccctacatagtactccatattcttattcttcttgggtggtgggctatcaaccacctgctccttccctgccctttgagccacacggccctcactagaccggccgacattgtcgtttggcatcggagtaaagttgtcatcgcttccaccgctgggtgttctctcgccaataccacctacgcacaacattgtaccttcttccgtgtccatgcagccaaaaagagtagttagctcatcctcatgttcaagcggctttccacggaactgtctggcatccctattctcctacaatgcagatatggacaatgtaagcgtgacgagaaaacaaccaaaactcatagtagttcagtagtaaaatcaatttttacatgtagttacctcgatacggtcttcccaccagtcatcatcgcaccttatggtgccagaactgttgtcccacccacctccactcttattctttaggctcatccatagcttgtactgtctcttcaaggtgctaaatttgttctgaagctgtttgctatcatagttcttgcctgtttgttctctgaaattgcgatataagttctgccaacctatgttggtaagacccttcttgttgtagttgagctttatcttctcagcaatgcataagtcgaggaatatctttgtaagggctttatcccaataggcgcggcctccagccat
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| CDS seq | atggctggaggccgcgcctattgggataaagcccttacaaagatattcctcgacttatgcattgctgagaagataaagctcaactacaacaagaagggtcttaccaacataggttggcagaacttatatcgcaatttcagagaacaaacaggcaagaactatgatagcaaacagcttcagaacaaatttagcaccttgaagagacagtacaagctatggatgagcctaaagaataagagtggaggtgggtgggacaacagttctggcaccataaggtgcgatgatgactggtgggaagaccgtatcgaggagaatagggatgccagacagttccgtggaaagccgcttgaacatgaggatgagctaactactctttttggctgcatggacacggaagaaggtacaatgttgtgcgtaggtggtattggcgagagaacacccagcggtggaagcgatgacaactttactccgatgccaaacgacaatgtcggccggtctagtgagggccgtgtggctcaaagggcagggaaggagcaggtggttgatagcccaccacccaagaagaataagaatatggagtactatgtagggcgcatatcagagagtatgcttgaaaggagtaggaatgaaagcagtgtgatcaggggagagcaagatgagatgaaagaattgctgcaccttgtagaagaggacggtgtggctcaaggatccgagttgtatttcatagctactgacctatttaggtcagctgcacgacgtgcagcttttaagtgcatttaccccgcagagaatcgtaaagcatggctccgatggacttgggagaatgctagtaaaaaaatgtctacctctgaaacttcgagcagcacaagctcctcggctgcacatttggatgatgggtggtctacctggtgggacatgggtgcagctgtcggtgtgctagcagcagtagcatcagcaagatcaagtggttgcggagtgaaagatgccaccttgcccttcaaggaggtgacgggtcgtcaatgggtagatctgaatcttgctgacagtaacaaggctggaataacccgtagcaagatatccataccgaagaggcaacagagggaaatgatatcaaggtattga
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| Protein seq | MAGGRAYWDKALTKIFLDLCIAEKIKLNYNKKGLTNIGWQNLYRNFREQTGKNYDSKQLQNKFSTLKRQYKLWMSLKNKSGGGWDNSSGTIRCDDDWWEDRIEENRDARQFRGKPLEHEDELTTLFGCMDTEEGTMLCVGGIGERTPSGGSDDNFTPMPNDNVGRSSEGRVAQRAGKEQVVDSPPPKKNKNMEYYVGRISESMLERSRNESSVIRGEQDEMKELLHLVEEDGVAQGSELYFIATDLFRSAARRAAFKCIYPAENRKAWLRWTWENASKKMSTSETSSSTSSSAAHLDDGWSTWWDMGAAVGVLAAVASARSSGCGVKDATLPFKEVTGRQWVDLNLADSNKAGITRSKISIPKRQQREMISRY |
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| Function | L10-interacting MYB domain-containing protein [UniProtKB/Swiss-Prot:Q9FFJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0030720 | OsKeNa_01g0030720.01 | Chr01 | 29657957 | 29663145 | - | NAM | ||
| CDS seq | atggctggaggccgcgcctattgggataaagcccttacaaagatattcctcgacttatgcattgctgagaagataaagctcaactacaacaagaagggtcttaccaacataggttggcagaacttatatcgcaatttcagagaacaaacaggcaagaactatgatagcaaacagcttcagaacaaatttagcaccttgaagagacagtacaagctatggatgagcctaaagaataagagtggaggtgggtgggacaacagttctggcaccataaggtgcgatgatgactggtgggaagaccgtatcgaggagaatagggatgccagacagttccgtggaaagccgcttgaacatgaggatgagctaactactctttttggctgcatggacacggaagaaggtacaatgttgtgcgtaggtggtattggcgagagaacacccagcggtggaagcgatgacaactttactccgatgccaaacgacaatgtcggccggtctagtgagggccgtgtggctcaaagggcagggaaggagcaggtggttgatagcccaccacccaagaagaataagaatatggagtactatgtagggcgcatatcagagagtatgcttgaaaggagtaggaatgaaagcagtgtgatcaggggagagcaagatgagatgaaagaattgctgcaccttgtagaagaggacggtgtggctcaaggatccgagttgtatttcatagctactgacctatttaggtcagctgcacgacgtgcagcttttaagtgcatttaccccgcagagaatcgtaaagcatggctccgatggacttgggagaatgctagtaaaaaaatgtctacctctgaaacttcgagcagcacaagctcctcggctgcacatttggatgatgggtggtctacctggtgggacatgggtgcagctgtcggtgtgctagcagcagtagcatcagcaagatcaagtggttgcggagtgaaagatgccaccttgcccttcaaggaggtgacgggtcgtcaatgggtagatctgaatcttgctgacagtaacaaggctggaataacccgtagcaagatatccataccgaagaggcaacagagggaaatgatatcaaggtattga
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| Protein seq | MAGGRAYWDKALTKIFLDLCIAEKIKLNYNKKGLTNIGWQNLYRNFREQTGKNYDSKQLQNKFSTLKRQYKLWMSLKNKSGGGWDNSSGTIRCDDDWWEDRIEENRDARQFRGKPLEHEDELTTLFGCMDTEEGTMLCVGGIGERTPSGGSDDNFTPMPNDNVGRSSEGRVAQRAGKEQVVDSPPPKKNKNMEYYVGRISESMLERSRNESSVIRGEQDEMKELLHLVEEDGVAQGSELYFIATDLFRSAARRAAFKCIYPAENRKAWLRWTWENASKKMSTSETSSSTSSSAAHLDDGWSTWWDMGAAVGVLAAVASARSSGCGVKDATLPFKEVTGRQWVDLNLADSNKAGITRSKISIPKRQQREMISRY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0894050 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g59250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0338000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0037370 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012260 | RBH | 0.000000 | 1.276446 | 0.753606 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029940 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019860 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0536600 | RBH | 0 | 0 | 0.0128815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012150 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0461200 | RBH | 0 | 0.0167045 | 0.0078695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011630 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011830 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011710 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012490 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011720 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011910 | SBH | 1.053535 | 1.933427 | 2.246658 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011850 | SBH | 0.0 | 0.0 | 0.0 |
