Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0019860 | OGI:10014290 | 5/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:24339524-24342769 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctggaggccgcgcctattgggataaagcccttacaaagatattcctcgacttatgcattgctgagaagataaagctcaactacaacaagaagggtcttaccaacataggttggcagaacttatatcgcaatttcagagaacaaacaggcaagaactatgatagcaaacagcttcagaacaaatttagcaccttgaagagacagtacaagctatggatgagcctaaagaataagagtggaggtgggtgggacaacagttctggcaccataaggtgcgatgatgactggtgggaagaccgtatcgaggtaactacatgtaaaaattgattttactactgaactactatgagttttggttgttttctcgtcacgcttacattgtccatatctgcattgtaggagaatagggatgccagacagttccgtggaaagccgcttgaacatgaggatgagctaactactctttttggctgcatggacacggaagaaggtacaatgttgtgcgtaggtggtattggcgagagaacacccagcggtggaagcgatgacaactttactccgatgccaaacgacaatgtcggccggtctagtgagggccgtgtggctcaaagggcagggaaggagcaggtggttgatagcccaccacccaagaagaataagaatatggagtactatgtagggcgcatatcagagagtatgcttgaaaggagtaggaatgaaagcagtgtgatcaggggagagcaagatgagatgaaagaattgctgcaccttgtagaagaggatggtgtggctcaaggatccgagttgtatttcatagctactgacctatttaggtcagctgcacgacgtgcagcttttaagtgcatttaccccgcagagaatcgtaaagcatggctccgatggacttgggagaatgctagtaaaaagcgatactagtccatgctgccaccgaactacacttgttgtcacatgtagtgtttgattgtaatatacccatcgccaaatgacatggcattatgtaatcggttgttagaccttggcatgttcttatgttatgcattagaacctttgctacttttatcatataaatttgtatcggtcagcttgtcatgtcatttggatctagttgccttttctttatttttttaacttgaaaattgagtaaccatgctgcatcctcacctgctgtacaactggaaaaatgcactacattgattttgtacatgcatacattttgtaactgatattatcattctataagttgtaggtttccctgaatgaagaggtgctaaaggataggcaaggaggtcaatactaggtaaaagaaactatgatatatgcaaaatcatatattgtttgttgaattgctcaaacatagtacattccttgcagaatgtctacctctgaaacttcgagcagcacaagctcctcggctgcacatttggatgatgggtggtctacctggtgggacatgggtgcagctgtcggtgtgctagcagcagtagcatcagcaagatcaagtggttgcggagtgaaagatgccaccttgcccttcaaggaggtgacgggtcgtcaatgggtagatctgaatcttgctgacagtaacaagtgctacagaaatttccgtctccggcctactgcattccatttgttgcatacaacattggttgcaaaacacggtctaaaatcctcccgtcattgtgagtcgattgaagccttagggatgttcttatgggcttgtggcacaagacaatgtcaaagacagatgtcagatcgatttggtcggtcattggacaccgtaagtaggaagtttgacgaagtcttagatgccatgttatcttttgcacggaggattattaggccaagggacccaagctttagatatgtgcatcctaacctgcaccagttctcaccatactttgatgggtgtattggagctatagatggaacctacattccagtcacagtccttgatccgactcatgatgatttcattaacaggaaggggttcaccagccaaaacgtgttggctatatgcgacatgggcatgcggtttacatttgtcgctacgggtaagaggggggctgcgcatgacatggctgttttcagggaggcagtgaacactgctgaccatttccctcacccacccccaggtgagtacatccagtttaaattacattgaagcttcccattttaaattacaaaatatgacttagttcattttctaggcaagtactatctagtggattctggttacccactacgcgagggttacatggccccatatcgcaagactaggtaccatttgaagcaatttaatggcaaaggtcctgaaaatctgtgcgagatttttaactaccaccattcttgtctacggaacgtggttgaacgctcatttggggttttaaagaataagtggaagattctaaaggggataccattgtatcctatggagaagcaatcaaagattattgtcgcatgcttcgcgctgcataatttcgcgatggacaacaacgaacccgagatggacggagacaatgtgtttgggcagtaccagtaccttcgcacgcctggtcaaccaattggcccgttgcaagattggttagcagctactgccgatgatgatattggcactgtccgtgattggattgcagctggactatatggtttggcatgaataggtatgatacttatgcttatatagttaccaaaaatcagttggtgtaaagtagtataatgttacagctccaattactttgatctctttgttgtaatcatgtatactggactaacatttttgtttggctgattatgcagttctcacaagacatgttagtgatttggtgtatctatgatgcctcagaattggaagatggttatgttctattgtgttttgttgtcagttgaccggttctgttgccctactgtatttcttttgtttcactaaggatgctatattatgaattaggtgatcatatgtttatgtgattgaatgatggctatgaatggggaattttgttatggttgtaacctgcaaaatatggctaatgtctgtgttgcctgcataatattgaaaaatagtttcataagtttttggctcttttcttatgttttatgtgtgttagggctggaataacccgtagcaagatatccataccgaagaggcaacagaggttagttatcttgagcatgacctgcttcatgtttgttatccttatgttaactctattctggtcaaactaa
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| CDS seq | atggctggaggccgcgcctattgggataaagcccttacaaagatattcctcgacttatgcattgctgagaagataaagctcaactacaacaagaagggtcttaccaacataggttggcagaacttatatcgcaatttcagagaacaaacaggcaagaactatgatagcaaacagcttcagaacaaatttagcaccttgaagagacagtacaagctatggatgagcctaaagaataagagtggaggtgggtgggacaacagttctggcaccataaggtgcgatgatgactggtgggaagaccgtatcgaggagaatagggatgccagacagttccgtggaaagccgcttgaacatgaggatgagctaactactctttttggctgcatggacacggaagaaggtacaatgttgtgcgtaggtggtattggcgagagaacacccagcggtggaagcgatgacaactttactccgatgccaaacgacaatgtcggccggtctagtgagggccgtgtggctcaaagggcagggaaggagcaggtggttgatagcccaccacccaagaagaataagaatatggagtactatgtagggcgcatatcagagagtatgcttgaaaggagtaggaatgaaagcagtgtgatcaggggagagcaagatgagatgaaagaattgctgcaccttgtagaagaggatggtgtggctcaaggatccgagttgtatttcatagctactgacctatttaggtcagctgcacgacgtgcagcttttaaaatgtctacctctgaaacttcgagcagcacaagctcctcggctgcacatttggatgatgggtggtctacctggtgggacatgggtgcagctgtcggtgtgctagcagcagtagcatcagcaagatcaagtggttgcggagtgaaagatgccaccttgcccttcaaggaggtgacgggtcgtcaatgggtagatctgaatcttgctgacagtaacaaggctggaataacccgtagcaagatatccataccgaagaggcaacagaggttagttatcttgagcatgacctgcttcatgtttgttatccttatgttaactctattctggtcaaactaa
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| Protein seq | MAGGRAYWDKALTKIFLDLCIAEKIKLNYNKKGLTNIGWQNLYRNFREQTGKNYDSKQLQNKFSTLKRQYKLWMSLKNKSGGGWDNSSGTIRCDDDWWEDRIEENRDARQFRGKPLEHEDELTTLFGCMDTEEGTMLCVGGIGERTPSGGSDDNFTPMPNDNVGRSSEGRVAQRAGKEQVVDSPPPKKNKNMEYYVGRISESMLERSRNESSVIRGEQDEMKELLHLVEEDGVAQGSELYFIATDLFRSAARRAAFKMSTSETSSSTSSSAAHLDDGWSTWWDMGAAVGVLAAVASARSSGCGVKDATLPFKEVTGRQWVDLNLADSNKAGITRSKISIPKRQQRLVILSMTCFMFVILMLTLFWSN |
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| Function | L10-interacting MYB domain-containing protein [UniProtKB/Swiss-Prot:Q9FFJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0019860 | OsPr106_12g0019860.01 | Chr12 | 24339524 | 24342769 | + | NAM | ||
| CDS seq | atggctggaggccgcgcctattgggataaagcccttacaaagatattcctcgacttatgcattgctgagaagataaagctcaactacaacaagaagggtcttaccaacataggttggcagaacttatatcgcaatttcagagaacaaacaggcaagaactatgatagcaaacagcttcagaacaaatttagcaccttgaagagacagtacaagctatggatgagcctaaagaataagagtggaggtgggtgggacaacagttctggcaccataaggtgcgatgatgactggtgggaagaccgtatcgaggagaatagggatgccagacagttccgtggaaagccgcttgaacatgaggatgagctaactactctttttggctgcatggacacggaagaaggtacaatgttgtgcgtaggtggtattggcgagagaacacccagcggtggaagcgatgacaactttactccgatgccaaacgacaatgtcggccggtctagtgagggccgtgtggctcaaagggcagggaaggagcaggtggttgatagcccaccacccaagaagaataagaatatggagtactatgtagggcgcatatcagagagtatgcttgaaaggagtaggaatgaaagcagtgtgatcaggggagagcaagatgagatgaaagaattgctgcaccttgtagaagaggatggtgtggctcaaggatccgagttgtatttcatagctactgacctatttaggtcagctgcacgacgtgcagcttttaaaatgtctacctctgaaacttcgagcagcacaagctcctcggctgcacatttggatgatgggtggtctacctggtgggacatgggtgcagctgtcggtgtgctagcagcagtagcatcagcaagatcaagtggttgcggagtgaaagatgccaccttgcccttcaaggaggtgacgggtcgtcaatgggtagatctgaatcttgctgacagtaacaaggctggaataacccgtagcaagatatccataccgaagaggcaacagaggttagttatcttgagcatgacctgcttcatgtttgttatccttatgttaactctattctggtcaaactaa
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| Protein seq | MAGGRAYWDKALTKIFLDLCIAEKIKLNYNKKGLTNIGWQNLYRNFREQTGKNYDSKQLQNKFSTLKRQYKLWMSLKNKSGGGWDNSSGTIRCDDDWWEDRIEENRDARQFRGKPLEHEDELTTLFGCMDTEEGTMLCVGGIGERTPSGGSDDNFTPMPNDNVGRSSEGRVAQRAGKEQVVDSPPPKKNKNMEYYVGRISESMLERSRNESSVIRGEQDEMKELLHLVEEDGVAQGSELYFIATDLFRSAARRAAFKMSTSETSSSTSSSAAHLDDGWSTWWDMGAAVGVLAAVASARSSGCGVKDATLPFKEVTGRQWVDLNLADSNKAGITRSKISIPKRQQRLVILSMTCFMFVILMLTLFWSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0207200 | SBH | 0.153832 | 0.211287 | 0.503558 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g35190 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0207200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003570 | RBH | 0.212904 | 0.968618 | 4.625970 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0030720 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003460 | RBH | 1.519869 | 1.062154 | 7.353727 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003760 | RBH | 0.067838 | 0.047662 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0281300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015200 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0366400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011640 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002650 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015460 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011730 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011860 | SBH | 0.0 | 0.0 | 0.0 |
