Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g59250 | OGI:01040070 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:34246251-34249623 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAAACATAAATAATGGTTTATTTGAAAAACATCGCCCATCACAACTCAAAGTAAAGTACAGTGCACAAACTACCAGGTGCCACCAGATGACTGTCCAGTACCACCAGTGCGTATAAATTCCAAGCGCCTAGCGGCGTCCTTGATTCGAACAAAGCATTTGCAGTTGAATGGGTCACGGAATAGCGCACAAGCAGCATACCACACACTTCCTCCAATTTCATGGCCATCATTTTCCACCAACTCCATGCACGCATCAAGGCCCATAGACTTCTCTGCTTCCATCTGAGCAACACGACTCTGGTAGCTCTGCTCTCGGATGTCCGCAATCCTCTCCAAAGCCAGTCCAGCGGAGTCGCTTCGTGACTTCTTGGAAGAACTCCCTGAGGCAGTAGTGTTTGCTGCTGGCCTCTTTCCCTTGCCCCGGTCTGCTGCCGTTGGGGGTGGAGTTGGAGGTGGTGGTCTATAAGCAGCAGCGAGCTGCGCCATGTCGATGGTCTGCCACTGAACTGCTCCTTGCGGTGCCTGTGGGGCTGCCCCTGCGACGGCGGAGTGGTTTCCGACAACTGTGTGCCCACTGAATACCGTGTGGTGAAGGTCAATGTGCTTCAGAGGATCATTCCTGAAGCTTAAGACACCTTTATTTTGCTGCAACATAAGTAGACAGTAAAAATAAGTTAGTACAAGGCAAGTGCATTAGGCTTGTGCAAACATTGAACATAATGAATATGTGCAGTCCAATGTGCATTACTACTAAAATGCTGGCAGTAAATGTGCACATTGGTACCAAGTTATCAAATATAATCAGGAGTACATGTTACAATGGGCCACACATCTGACAGAATGAAAGAAAGATAGTTTGAACATTGTAAACATAAGATAAACTGCATATATTATATTCTTTGTAGATGAGCACATTTTTGTTCATTCTCTCTATATACATCACAAAGAAGGTGTGTACAGCTAGTTGAATATGTATTAACATGTTCCTAAATGACCCTAGTATGCGCAGACCTTAGGATTTGGTCAAAATAACAGATTTAGAGAGATTTTTCGTAGTACTAGTTACTGCCCTGTTTGCGTCTAGTTTTGTGTGAACCCTGTAACAAATTTGACAGTAATACACGGCTAATGCTGTGTTTCTGGAAAATTTTAAAATGTACTGGTTCAAGTTTCAATGATTCATACATCTGAACTCAGTTGAACTTTGTACAGATGGTTACACTGGAGTCAAAACTCTTAGGACAGAATATCATTATTATGCTCAAACTTAACATCATAACACCAAACCAAAACAGTATGTTTGTGATCTCCCTCTTTTTCACGCGTACGCTTTTCAAACTGCTAAACAGTATGTTTTTTGTAAAAAATTTCTATACGAAAGTTACTTTAAAAAATCATATTAATCCATTTTTTTAAAAAAATAACAAATACTCAATTAATCATGTAATAATAGACTTCATTTTGCGTGCCGGGGAGGACTCCTCCCGAACAGAGCCCTAATATAGGATCTACCGATATACTCATCTGTCCCAAAATATAAGAAATTTTGTACGGATGGAACACTCCAAATTCGTTACACTAGGAAATGTCCCCTCCGTCCAAAACCCCTTATATTTTGGGACAAATGAAGTAAGTGCTAACCAGTTCAGAAAACAGAAATAATGTTCAACACAAGCATATGCTGTGATACAGCATCTGAAGTATCAACTCACATGTCACATTCTACATGCAAAATCTGCTGCTTCAGAATAAGGCACCCCAAAATTGGGATGCCCATTCTAGTTGTACAGTACAATCCAAGAACCATTGTTTATTGTTTACAACATTTCTACATGAGTTTTAACACATAATCACTATTCCTGCAAAATAATGCTAAACGGATACACTACATATACACTACATATAGATCTTTCCTAAACATCATTTTGTTAACTTAAATACAAGGGAATGGCACACATTACTAAAAACGACATGACAGTAACAACTATGAAACATATGTGATCACAATCCTTCCATTTTACTGCAGCTAGTCATTTGTTGGCACACACAATTTGAACAAAAAAATTATTACACCTCACAAAACTGTATTTATAATTGCATGCATGTACTAAATTTCAGATAATACCAATTGTAAGCAAAATTGTTGGTTCAAAATATTTATGGTCAAGTGTACGTACCGCATTCTTGCTTTCCCACCACTCATCATCGGCAACAATGGCTGATGTATGGGGATCACGACCCAGCCCGCTTGCATGCGATTCTAGCCACACCCACCTGTTGTACCGCTTCTTACACTGCCCCCAAATGTACTCCAATTGAGCCTTGTTCACCTTCTTCTTGCACTTGGTGTACATCTTGTGTATTAGGTTCTGCCATGCCTGCGGCTTGGGGGAGTTGGAGGTGATGGTGAACGCTGCCATCTCCTCCAAGCAGCTCTCAAGAAACACACGAACCTCCATATCGGTCCACCGGCTACGGCCATCGCCCATCTACTCCGTGCAAGTCAAATAAAATTGAATCGGAAATGAACAAATTAATACAAACCAATACCTTAGATGACTCTTCCTCGCGGACGACGTCCCAATCAATCGAACGGCCGACGGTGGCAGGGCTCACTCTTCGAACAAAGTCGATGACGGCTCTAGGAGACTTGGCGCAAACTTTGCAGAGGGCATGCGCGATATGAAGCACGTCGTCGGGAGCAGCCTTGGCGCTGCCAGCGTCGGAGGTGACAGAGTCGGAGGAGTCCTCGCCGGACTCCAGATCGGCGCCGCGGACAGAGATCTCCCCTGTTTGAGGGGATTGAACAATCGTCCCCTCCTCTTGGATCGACAATAGATCCCGCTCTCGCTTCCGCTTCTTCGCTGTCGTCTCCATCGGACCACGCACACGCTCGGCCTGAAATAGAGACTCCTCAAATCCGCCAGCTTGGATGCCTTGATGAGACTCTTCAGGCCAGCACTGTCTGACCCGAGAGGCAGAGAGGACGAGCACACAGGCAGCCAGACTGCTTGCTACTTCACAGCGAGCACGCCGGCCAGCTTTTACTCCCCTCGAGGACGACGCAGACAGCTCGACAGGCGTGGAGCTCTTCCACTTCCCCCCGATTTTGAGCACCTTGAACCGACCGCTGCCGCAAGACGACGCGCGGACGAGAATCGATTGGGGGGGGGGGGGCACGGGCCTGCAAGCCACAGTCGAAAGGGGAGGACGGGAGCCTGCAGCGGAGGGGAAGAAAGAGGGATTCTCCGCCAGGCCTGCGTCGCATCGACGACCGCGGAAGCAACAGCGAGAGGAGGAAGAAAGAGGGATCGAGAGCATTGGATGCCCTGACTCTGACGGAAAAGCCGAGGCGCAACGGCAACTTCTCACA
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| CDS seq | ATGGGCGATGGCCGTAGCCGGTGGACCGATATGGAGGTTCGTGTGTTTCTTGAGAGCTGCTTGGAGGAGATGGCAGCGTTCACCATCACCTCCAACTCCCCCAAGCCGCAGGCATGGCAGAACCTAATACACAAGATGTACACCAAGTGCAAGAAGAAGGTGAACAAGGCTCAATTGGAGTACATTTGGGGGCAGTGTAAGAAGCGGTACAACAGGTGGGTGTGGCTAGAATCGCATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCGCAAAATAAAGGTGTCTTAAGCTTCAGGAATGATCCTCTGAAGCACATTGACCTTCACCACACGGTATTCAGTGGGCACACAGTTGTCGGAAACCACTCCGCCGTCGCAGGGGCAGCCCCACAGGCACCGCAAGGAGCAGTTCAGTGGCAGACCATCGACATGGCGCAGCTCGCTGCTGCTTATAGACCACCACCTCCAACTCCACCCCCAACGGCAGCAGACCGGGGCAAGGGAAAGAGGCCAGCAGCAAACACTACTGCCTCAGGGAGTTCTTCCAAGAAGTCACGAAGCGACTCCGCTGGACTGGCTTTGGAGAGGATTGCGGACATCCGAGAGCAGAGCTACCAGAGTCGTGTTGCTCAGATGGAAGCAGAGAAGTCTATGGGCCTTGATGCGTGCATGGAGTTGGTGGAAAATGATGGCCATGAAATTGGAGGAAGTGTGTGGTATGCTGCTTGTGCGCTATTCCGTGACCCATTCAACTGCAAATGCTTTGTTCGAATCAAGGACGCCGCTAGGCGCTTGGAATTTATACGCACTGGTGGTACTGGACAGTCATCTGGTGGCACCTGGTAG
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| Protein seq | MGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADDEWWESKNAQNKGVLSFRNDPLKHIDLHHTVFSGHTVVGNHSAVAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIREQSYQSRVAQMEAEKSMGLDACMELVENDGHEIGGSVWYAACALFRDPFNCKCFVRIKDAARRLEFIRTGGTGQSSGGTW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g59250 | LOC_Os01g59250.1 | Chr01 | 34246251 | 34249623 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGCGATGGCCGTAGCCGGTGGACCGATATGGAGGTTCGTGTGTTTCTTGAGAGCTGCTTGGAGGAGATGGCAGCGTTCACCATCACCTCCAACTCCCCCAAGCCGCAGGCATGGCAGAACCTAATACACAAGATGTACACCAAGTGCAAGAAGAAGGTGAACAAGGCTCAATTGGAGTACATTTGGGGGCAGTGTAAGAAGCGGTACAACAGGTGGGTGTGGCTAGAATCGCATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCGCAAAATAAAGGTGTCTTAAGCTTCAGGAATGATCCTCTGAAGCACATTGACCTTCACCACACGGTATTCAGTGGGCACACAGTTGTCGGAAACCACTCCGCCGTCGCAGGGGCAGCCCCACAGGCACCGCAAGGAGCAGTTCAGTGGCAGACCATCGACATGGCGCAGCTCGCTGCTGCTTATAGACCACCACCTCCAACTCCACCCCCAACGGCAGCAGACCGGGGCAAGGGAAAGAGGCCAGCAGCAAACACTACTGCCTCAGGGAGTTCTTCCAAGAAGTCACGAAGCGACTCCGCTGGACTGGCTTTGGAGAGGATTGCGGACATCCGAGAGCAGAGCTACCAGAGTCGTGTTGCTCAGATGGAAGCAGAGAAGTCTATGGGCCTTGATGCGTGCATGGAGTTGGTGGAAAATGATGGCCATGAAATTGGAGGAAGTGTGTGGTATGCTGCTTGTGCGCTATTCCGTGACCCATTCAACTGCAAATGCTTTGTTCGAATCAAGGACGCCGCTAGGCGCTTGGAATTTATACGCACTGGTGGTACTGGACAGTCATCTGGTGGCACCTGGTAG
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| Protein seq | MGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADDEWWESKNAQNKGVLSFRNDPLKHIDLHHTVFSGHTVVGNHSAVAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIREQSYQSRVAQMEAEKSMGLDACMELVENDGHEIGGSVWYAACALFRDPFNCKCFVRIKDAARRLEFIRTGGTGQSSGGTW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g11240 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0037370 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0030720 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017820 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011420 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002640 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0562300 | RBH | 0.0093415 | 0.110054 | 0.052534 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011410 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011260 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002670 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0011410 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011200 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002490 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001090 | SBH | 0.069817 | 2.611383 | 0.604130 |
