Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g11240 | OGI:12015940 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:6059766-6062878 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGACGACAGCGAAGAAGCGGAAGCGAGAGCGGGATCTATTGTCGATCCAAGAGGAGGGGACGATTGTTCAATCCCCTCAAACAGGGGAGATCTCTGTCCGCGGCGCCGATCTGGAGTCCGGCGAGGACTCCTCCGACTCTGTCACCTCCGACGCTGGCAGCGCCAAGGCTGCTCCCGACGACGTGCTTCATATCGCGCATGCCCTCTGCAAAGTTTGCGCCAAGTCTCCTAGAGCCGTCATCGACTTTGTTCGAAGAGTGAGCCCTGCCACCGTCGGCCGTTCGATTGATTGGGACGTCGTCCGCGAGGAAGAGTCATCTAAGGTATTGGTTTGTATTAATTTGTTCATTTCCGATTCAATTTTATTTGACTTGCACGGAGTAGATGGGCGATGGCCGTAGCCGGTGGACCGATATGGAGGTTCGTGTGTTTCTTGAGAGCTGCTTGGAGGAGATGGCAGCGTTCACCATCACCTCCAACTCCCCCAAGCCGCAGGCATGGCAGAACCTAATACACAAGATGTACACCAAGTGCAAGAAGAAGGTGAACAAGGCTCAATTGGAGTACATTTGGGGGCAGTGTAAGAAGCGGTACAACAGGTGGGTGTGGCTAGAATCGCATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCGGTACGTACACTTGACCATAAATATTTTGAACCAACAATTTTGCTTACAATTGGTATTATCTGAAATTTAGTACATGCATGCAATTATAAATACAGTTTTGTGAGGTGTAATAATTTTTTTGTTCAAATTGTGTGTGCCAACAAATGACTAGCTGCAGTAAAATGGAAGGATTGTGATCACATATGTTTCATAGTTGTTACTGTCATGTCGTTTTTAGTAATGTGTGCCATTCCCTTGTATTTAAGTTAACAAAATGATGTTTAGGAAAGATCTATATGTAGTGTATATGTAGTGTATCCGTTTAGCATTATTTTGCAGGAATAGTGATTATGTGTTAAAACTCATGTAGAAATGTTGTAAACAATAAACAATGGTTCTTGGATTGTACTGTACAACTAGAATGGGCATCCCAATTTTGGGGTGCCTTATTCTGAAGCAGCAGATTTTGCATGTAGAATGTGACATGTGAGTTGATACTTCAGATGCTGTATCACAGCATATGCTTGTGTTGAACATTATTTCTGTTTTCTGAACTGGTTAGCACTTACTTCATTTGTCCCAAAATATAAGGGGTTTTGGACGGAGGGGACATTTCCTAGTGTAACGAATTTGGAGTGTTCCATCCGTACAAAATTTCTTATATTTTGGGACAGATGAGTATATCGGTAGATCCTATATTAGGGCTCTGTTCGGGAGGAGTCCTCCCCGGCACGCAAAATGAAGTCTATTATTACATGATTAATTGAGTATTTGTTATTTTTTTTAAAAAATGGATTAATATGATTTTTTAAAGTAACTTTCGTATAGAATTTTTTTACAAAAAACATACTGTTTAGCAGTTTGAAAAGCGTACGCGTGAAAAAGAGGGAGATCACAAACATACTGTTTAGGTTTGGTGTTATGATGTTAAGTTTGAGCATAATAATGATATTCTGTCCTAAGAGTTTTGACTCCAGTGTAACCATCTGTACAAAGTTCAACTGAGTTCAGATGTATGAATCATTGAAACTTGAACCAGTACATTTTAAAATTTTCCAGAAACACAGCATTAGCCGTGTATTACTGTCAAATTTGTTACAGGGTTCACACAAAACTAGACGCAAACAGGGCAGTAACTAGTACTACGAAAAATCTCTCTAAATCTGTTATTTTGACCAAATCCTAAGGTCTGCGCATACTAGGGTGCACACAGTACGGACTAGCTGATACAAGTACAACATGATGCCAGAATGTATGATGCATGCAATTATAAATACAGTTTTGTGAGGTGTAATAATTTTTTTGTTCAAATTGTGTGTGCCAACAAATGACTAGCTGCAGTAAAATGGAAGGATTGTGATCACATATGTTTCATAGTTGTTACTGTCATGTCGTTTTTAGTAATGTGTGCCATTCCCTTGTATTTAAGTTAACAAAATGATGTTTAGGAAAGATCTATATGTAGTGTATATGTAGTGTATCAGTAAATTAGGAAAGATCTTGTACAAGTCATTTAGGAACATGTTAATACATATTCAACTAGCTGTACACACCTTCTTTGTGATGTATATAGAGAGAATGAACAAAAATGTGCTCATCTACAAAGAATATAATATATGCAGTTTATCTTATGTTTACAATGTTCAAACTATCTTTCTTTCATTCTGTCAGATGTGTGGCCCATTGTAACATGTACTCCTGATTATATTTGATAACTTGGTACCAATGTGCACATTTACTGCCAGCATTTTAGTAGTAATGCACATTGGACTGCACATATTCATTATGTTCAATGTTTGCACAAGCCTAATGCACTTGCCTTGTACTAACTTATTTTTACTGTCTACTTATGTTGCAGCAAAATAAAGGTGTCTTAAGCTTCAGGAATGATCCTCTGAAGCACATTGACCTTCACCACGCGGTATTCAGTGGGCACACAGTTGTCGGAAACCACTCCGCCGTCGCAGGGGCAGCCCCACAGGCACCGCAAGGAGCAGTTCAGTGGCAGACCATCGACATGGCGCAGCTCGCTGCTGCTTATAGACCACCACCTCCAACTCCACCCCCAACGGCAGCAGACCGGGGCAAGGGAAAGAGGCCAGCAGCAAACACTACTGCCTCAGGGAGTTCTTCCAAGAAGTCACGAAGCGACTCCGCTGGACTGGCTTTGGAGAGGATTGCGGACATCCGAGAGCAGAGCTACCAGAGTCGTGTTGCTCAGATGGAAGCAGAGAAGTCTATGGGCCTTGATGCGTGCATGGAGTTGGTGGAAAATGATGGCCATGAAATTGGAGGAAGTGTGTGGTATGCTGCTTGTGCGCTATTCCGTGACCCATTCAACTGCAAATGCTTTGTTCGAATCAAGGACGCCGCTAGGCGCTTGGAATTTATACGCACTGGTGGTACTGGACAGTCATCTGGTGGCACCTGGTAG
More
|
||||||||||
| CDS seq | ATGGAGACGACAGCGAAGAAGCGGAAGCGAGAGCGGGATCTATTGTCGATCCAAGAGGAGGGGACGATTGTTCAATCCCCTCAAACAGGGGAGATCTCTGTCCGCGGCGCCGATCTGGAGTCCGGCGAGGACTCCTCCGACTCTGTCACCTCCGACGCTGGCAGCGCCAAGGCTGCTCCCGACGACGTGCTTCATATCGCGCATGCCCTCTGCAAAGTTTGCGCCAAGTCTCCTAGAGCCGTCATCGACTTTGTTCGAAGAGTGAGCCCTGCCACCGTCGGCCGTTCGATTGATTGGGACGTCGTCCGCGAGGAAGAGTCATCTAAGATGGGCGATGGCCGTAGCCGGTGGACCGATATGGAGGTTCGTGTGTTTCTTGAGAGCTGCTTGGAGGAGATGGCAGCGTTCACCATCACCTCCAACTCCCCCAAGCCGCAGGCATGGCAGAACCTAATACACAAGATGTACACCAAGTGCAAGAAGAAGGTGAACAAGGCTCAATTGGAGTACATTTGGGGGCAGTGTAAGAAGCGGTACAACAGGTGGGTGTGGCTAGAATCGCATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCGCAAAATAAAGGTGTCTTAAGCTTCAGGAATGATCCTCTGAAGCACATTGACCTTCACCACGCGGTATTCAGTGGGCACACAGTTGTCGGAAACCACTCCGCCGTCGCAGGGGCAGCCCCACAGGCACCGCAAGGAGCAGTTCAGTGGCAGACCATCGACATGGCGCAGCTCGCTGCTGCTTATAGACCACCACCTCCAACTCCACCCCCAACGGCAGCAGACCGGGGCAAGGGAAAGAGGCCAGCAGCAAACACTACTGCCTCAGGGAGTTCTTCCAAGAAGTCACGAAGCGACTCCGCTGGACTGGCTTTGGAGAGGATTGCGGACATCCGAGAGCAGAGCTACCAGAGTCGTGTTGCTCAGATGGAAGCAGAGAAGTCTATGGGCCTTGATGCGTGCATGGAGTTGGTGGAAAATGATGGCCATGAAATTGGAGGAAGTGTGTGGTATGCTGCTTGTGCGCTATTCCGTGACCCATTCAACTGCAAATGCTTTGTTCGAATCAAGGACGCCGCTAGGCGCTTGGAATTTATACGCACTGGTGGTACTGGACAGTCATCTGGTGGCACCTGGTAG
More
|
||||||||||
| Protein seq | METTAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADDEWWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGHTVVGNHSAVAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIREQSYQSRVAQMEAEKSMGLDACMELVENDGHEIGGSVWYAACALFRDPFNCKCFVRIKDAARRLEFIRTGGTGQSSGGTW |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g11240 | LOC_Os12g11240.1 | Chr12 | 6059766 | 6062878 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGACGACAGCGAAGAAGCGGAAGCGAGAGCGGGATCTATTGTCGATCCAAGAGGAGGGGACGATTGTTCAATCCCCTCAAACAGGGGAGATCTCTGTCCGCGGCGCCGATCTGGAGTCCGGCGAGGACTCCTCCGACTCTGTCACCTCCGACGCTGGCAGCGCCAAGGCTGCTCCCGACGACGTGCTTCATATCGCGCATGCCCTCTGCAAAGTTTGCGCCAAGTCTCCTAGAGCCGTCATCGACTTTGTTCGAAGAGTGAGCCCTGCCACCGTCGGCCGTTCGATTGATTGGGACGTCGTCCGCGAGGAAGAGTCATCTAAGATGGGCGATGGCCGTAGCCGGTGGACCGATATGGAGGTTCGTGTGTTTCTTGAGAGCTGCTTGGAGGAGATGGCAGCGTTCACCATCACCTCCAACTCCCCCAAGCCGCAGGCATGGCAGAACCTAATACACAAGATGTACACCAAGTGCAAGAAGAAGGTGAACAAGGCTCAATTGGAGTACATTTGGGGGCAGTGTAAGAAGCGGTACAACAGGTGGGTGTGGCTAGAATCGCATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCGCAAAATAAAGGTGTCTTAAGCTTCAGGAATGATCCTCTGAAGCACATTGACCTTCACCACGCGGTATTCAGTGGGCACACAGTTGTCGGAAACCACTCCGCCGTCGCAGGGGCAGCCCCACAGGCACCGCAAGGAGCAGTTCAGTGGCAGACCATCGACATGGCGCAGCTCGCTGCTGCTTATAGACCACCACCTCCAACTCCACCCCCAACGGCAGCAGACCGGGGCAAGGGAAAGAGGCCAGCAGCAAACACTACTGCCTCAGGGAGTTCTTCCAAGAAGTCACGAAGCGACTCCGCTGGACTGGCTTTGGAGAGGATTGCGGACATCCGAGAGCAGAGCTACCAGAGTCGTGTTGCTCAGATGGAAGCAGAGAAGTCTATGGGCCTTGATGCGTGCATGGAGTTGGTGGAAAATGATGGCCATGAAATTGGAGGAAGTGTGTGGTATGCTGCTTGTGCGCTATTCCGTGACCCATTCAACTGCAAATGCTTTGTTCGAATCAAGGACGCCGCTAGGCGCTTGGAATTTATACGCACTGGTGGTACTGGACAGTCATCTGGTGGCACCTGGTAG
More
|
|||||||
| Protein seq | METTAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADDEWWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGHTVVGNHSAVAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIREQSYQSRVAQMEAEKSMGLDACMELVENDGHEIGGSVWYAACALFRDPFNCKCFVRIKDAARRLEFIRTGGTGQSSGGTW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006010 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006020 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006050 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005960 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002670 | SBH | 0.0 | 0.0 | 0.587773 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0030100 | SBH | 0 | 0.2161295 | 0.009132 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002640 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0032100 | SBH | 0.011508 | 0.172885 | 0.062329 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002650 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023390 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002590 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011200 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002490 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001090 | SBH | 0.069817 | 2.611383 | 0.604130 |
