Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKeNa_01g0002500		OGI:01002710 \| 4/16			KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)			Chr01:1912706-1917634		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK20, OsRLCK20
DNA seq		atgtcttcctccacaacatatcctatagttagttttcgatgccgcctcctaccttgttgctgttattcatcacctacctcgcttgggagagccaagcagtgaggacgtcggcagatgcacatccagaagaaggctgcgcggccagtactgtatgtggcaaggtgaccatctcgtcgccgttcgccgtcgtgccggagcaggcaacggagagcaaatgcggctggcttggattccaggttatctgccgcaacgacactccatacctcggctactacaagctcggttatcggatccaggtcctcgacatcttctacggcaacaattcgttgctcgtctctgacatccacaagctcggtgacttcgatgtcttctccggcgtcagcaaagaatacctctgccatgttccgacgagcaacacctactccaaggtcgccctcccgttctccatcagcaccaccaatctcaacctcttcctgtacaattgcaataagacgcttgtgccgcgggacggagacggcgacctcgtggagacgatatgcggcaacaagacgtttgctcgcgtaggagggaattacagtgtttcgggcgattacgcggcgttttacatggaaggctgcaatgctaccgtcgtgccggtgctgggcacggacgcgaggagctatgagcagctcatccgcaacggcttcctcttgacatggcaagggccgccgtcatctggtaagttcaccatctacctgatcacgttcctaggaggaacaatgcgtaaatatttctggtgccagcttctcaaaagatccaacctgttaatcaatcccgattagggatggcaattgtgcccgtttgcccgtttactcgcgggtaaaaaccctattagggttgggtttgttctccattttatacccatgggtatcttattggttcaaaagctatgcccgatgggtaaatgggcatgggtatgggtaatcactacccatgcccactttgcccgtttacccgcgaaatctaacttacatgtaggctaggagcaaaatccactaaaatacataagccacgttctttgttttctacggtttccttttatttcccttattatttctctcctcttactctatcgccgccagaggagagacacgacaccgaggcggagaatatttgatgttttaagttcgattcgaacttagtagcttgtagactttttgttccactacgtttgttgtggcgggtaaacgggcacgcccacgggcataagacgcccgcgggcaatgggcatgggcaaccatccttacccgtgatgtagtaatgggtatacccacgggcacaaataatctcacgggcatgggtatggataggcactacccgtgcccgtcgcgcccgattgccatccctaatcccgactagtttatctgttgataaggccgtcgtcatcagttcatcactagtccacgctagtccaggtctgccattggccaactgaaaacccgatgggtatcgatattaaggataaataaattggaggtgcaaaactactaagaaagtgaaacaaagagagaaaaaggagcagtccgttcaatccgtggacctccggtcaaaaccggttcatcggtcattttccactgcgcgcgtcattagtcatatccaccgttccctttcttccatcccaataaaaactatttgcttcatatttccacttatgcttatacttatcagctaaaattaaaatttttaatcttaaatttaaagttaattttaaggtttttttcatcaaagtttatttttcactctttgttttagatcgctataagaacacgtattcacaaattattttttgtttgtaaatatgccgtttcgcagccgtattttaccgttcttttttgatctctcaaactctgcacacctccaagggtgcagcccgtcggagcagttgcatgagaaccccaggtcgttgccgtacgtgacatatgggtgacaccacaagcataaggccttgcttagttggggaaggattttgtatttgactgtcacatcggatatacggccacacatttaaagtattaaatgtagttcaataacaaaacaaatataaattacagattctactactacgagacgaatttattaaacctaattaatccatcattagcaaatgtttactgtagcaccatattgtcaaatcatggtgtaattaggcttaaaagatttgtctcgcaatttacacgtaatctgtgtaattggatttttttttacatttaatacttcatgcatgtatctaaacattcgatgtgacagcgtgaaaatttttgttttgaaaactaaacggacctactacagcatacttgtcaaactacgcgtcaggcatcaccgtgcagattacactacactagtcaagagtcaagacgtacccttcgggggcattgaacgattggcgcattgcggaatgattgccgctcaaagttcttcagaaatcagtgttcgtactgagtcctgactgcactgctgtgttccccattcattcagcatgattccgctccagctgctgctgctgctggcggtcactaccatcctcaagttgacgtcgccggccagctcggtgaactcgcctaggcctgcgtgctcgcccacgtcatgcggcaacgtgaccatctcctacccgttctggctggaggagcccggccagccgccgtgcgggtccccgtccttccagctcaagtgcaacaccagcggcgcatacctcacccgttccgtccatggcgcctatcgggttgtcgatatcgtcgtcgacaacaacaccttccatgtggtggacgaaaatctcccgctcgccaccggctgcccggcgccgttgttcaatgtatctgacggcatcgcgcagacgccgttcatcatcagcagagccaacgccgagctgcacttcctctcgtgtaatcagtcactttcagtggctcctcccggctttcgtggcctgccttgtgacaacaccacctccgtcaggctcgctggctatggggagcacgccgtcgccagctatcgactcccgccgggttgcagctccacggttgtgccgatccttgagagacctgatgggagtagtgccggctatgttgccagcatgagggatgggtttctactagagtggacggtggtttcaggagattgtcctcaatgcatagcaagcggcggggaatgcacgtacggcgcgaagacctgcggtttgactgccattgctccgacgggatgcatcctcagaagtgtggcgagtttgggaagtcagaagagcacggtaaattttcccagccaattcgtatgtacaattgttctctgaacatgcaaagaagatgctactagcggattcagtacatccgaagtgcccatttagtagatgtttctctctctagagaatgtgcaccagttcattagagtttgcattatagaaccggaatggacgtcctctccgttctgcacacaagcattccatgttagttgcattctccaccaaccgtgccaggatgcaaacttgccaatgtcattcttcaccaccgtctggaaagcaaaaaatacaattttccaatctgcgtgttaccttttcagttgttatgttttttttttaaaaaaaggtcatgttttgtacacaaatttgttatatgggcatatctttatctttcagtacgaaggttttcattaatacaacattacattttgcaggaaagagtaggaggtcaaggctcaagttgattttgattggtatgttctgtgctgtacatatttttgcttagtcatctgtaagaatatagctaaaatttcaaaatgcataattgcatttttctttacattgccaaggcatatcgatcagtatctaagttaaacctctaattttttattccagtttcgctgtctgctacagccagtttgattcttacatgtcttatttggattacataccgccaaaaggaaaaaggcagtttattcaccctccagaagtatgtggccaatgaatcaaaaatagaggaagtacttaaaggatatgattctctcagtccaaagaggtataactactcagagctgaagaaaataacaagatctttcaaggataaacttggacaaggtggctatggcatggtattcaaaggtgtcctacaagatggccggatggtagcagtgaagctcttgacaggaacaaaaggcaatggggaagagtttctgaacgaggtaatcagtattggtaggacatctcatgtgaatattgtcagtctgcttggtttttgtttacaaggatctaagcgagcacttgtttatgaacacatggccaatggttcgttggataagtatatctattcagaagaaccgaaagttgccatcggatgggaaaaattgcaacaaatagcaattggcatcgcgcgtggtttggagtatttgcattgcaggtgtaatacccgtataatccattttgatatcaagcctcataacatacttctagatgaagacttctgccctaaagttgcggattttggattggcaaaactgtgtcgcctcaaggatagtgccctctcaatggctgaagcaagaggtacagttggatttattgctccagaagtattttctagaggttttggagttgtgtccactaaatcagatgtatacagctatggtatgctacttctagaattggtaggaggaaggaggcatgttaatgaaactaccagccattccagtgaaactcattttcccaacaggatttatgattgtttagtgaaagatttgcaaactcatgtagtcatgactgaggctgaagagattgccaaactgttcacaatagttggcttgtggtgtatacaaactaacccagggaatcgcccttccattagtagggtcatagaaatgttggagaagaacatcaatgaattggaagtgccacccaaaccattcctgtcatga More
CDS seq		atgccgcctcctaccttgttgctgttattcatcacctacctcgcttgggagagccaagcagtgaggacgtcggcagatgcacatccagaagaaggctgcgcggccagtactgtatgtggcaaggtgaccatctcgtcgccgttcgccgtcgtgccggagcaggcaacggagagcaaatgcggctggcttggattccaggttatctgccgcaacgacactccatacctcggctactacaagctcggttatcggatccaggtcctcgacatcttctacggcaacaattcgttgctcgtctctgacatccacaagctcggtgacttcgatgtcttctccggcgtcagcaaagaatacctctgccatgttccgacgagcaacacctactccaaggtcgccctcccgttctccatcagcaccaccaatctcaacctcttcctgtacaattgcaataagacgcttgtgccgcgggacggagacggcgacctcgtggagacgatatgcggcaacaagacgtttgctcgcgtaggagggaattacagtgtttcgggcgattacgcggcgttttacatggaaggctgcaatgctaccgtcgtgccggtgctgggcacggacgcgaggagctatgagcagctcatccgcaacggcttcctcttgacatggcaagggccgccgtcatctggtaagttcaccatctacctgatcaccatgattccgctccagctgctgctgctgctggcggtcactaccatcctcaagttgacgtcgccggccagctcggtgaactcgcctaggcctgcgtgctcgcccacgtcatgcggcaacgtgaccatctcctacccgttctggctggaggagcccggccagccgccgtgcgggtccccgtccttccagctcaagtgcaacaccagcggcgcatacctcacccgttccgtccatggcgcctatcgggttgtcgatatcgtcgtcgacaacaacaccttccatgtggtggacgaaaatctcccgctcgccaccggctgcccggcgccgttgttcaatgtatctgacggcatcgcgcagacgccgttcatcatcagcagagccaacgccgagctgcacttcctctcgtgtaatcagtcactttcagtggctcctcccggctttcgtggcctgccttgtgacaacaccacctccgtcaggctcgctggctatggggagcacgccgtcgccagctatcgactcccgccgggttgcagctccacggttgtgccgatccttgagagacctgatgggagtagtgccggctatgttgccagcatgagggatgggtttctactagagtggacggtggtttcaggagattgtcctcaatgcatagcaagcggcggggaatgcacgtacggcgcgaagacctgcggtttgactgccattgctccgacgggatgcatcctcagaagtgtggcgagtttgggaagtcagaagagcacggaaagagtaggaggtcaaggctcaatttcgctgtctgctacagccagtttgattcttacatgtcttatttggattacataccgccaaaaggaaaaaggcagtttattcaccctccagaagtatgtggccaatgaatcaaaaatagaggaagtacttaaaggatatgattctctcagtccaaagaggtataactactcagagctgaagaaaataacaagatctttcaaggataaacttggacaaggtggctatggcatggtattcaaaggtgtcctacaagatggccggatggtagcagtgaagctcttgacaggaacaaaaggcaatggggaagagtttctgaacgaggtaatcagtattggtaggacatctcatgtgaatattgtcagtctgcttggtttttgtttacaaggatctaagcgagcacttgtttatgaacacatggccaatggttcgttggataagtatatctattcagaagaaccgaaagttgccatcggatgggaaaaattgcaacaaatagcaattggcatcgcgcgtggtttggagtatttgcattgcaggtgtaatacccgtataatccattttgatatcaagcctcataacatacttctagatgaagacttctgccctaaagttgcggattttggattggcaaaactgtgtcgcctcaaggatagtgccctctcaatggctgaagcaagaggtacagttggatttattgctccagaagtattttctagaggttttggagttgtgtccactaaatcagatgtatacagctatggtatgctacttctagaattggtaggaggaaggaggcatgttaatgaaactaccagccattccagtgaaactcattttcccaacaggatttatgattgtttagtgaaagatttgcaaactcatgtagtcatgactgaggctgaagagattgccaaactgttcacaatagttggcttgtggtgtatacaaactaacccagggaatcgcccttccattagtagggtcatagaaatgttggagaagaacatcaatgaattggaagtgccacccaaaccattcctgtcatga More
Protein seq		MPPPTLLLLFITYLAWESQAVRTSADAHPEEGCAASTVCGKVTISSPFAVVPEQATESKCGWLGFQVICRNDTPYLGYYKLGYRIQVLDIFYGNNSLLVSDIHKLGDFDVFSGVSKEYLCHVPTSNTYSKVALPFSISTTNLNLFLYNCNKTLVPRDGDGDLVETICGNKTFARVGGNYSVSGDYAAFYMEGCNATVVPVLGTDARSYEQLIRNGFLLTWQGPPSSGKFTIYLITMIPLQLLLLLAVTTILKLTSPASSVNSPRPACSPTSCGNVTISYPFWLEEPGQPPCGSPSFQLKCNTSGAYLTRSVHGAYRVVDIVVDNNTFHVVDENLPLATGCPAPLFNVSDGIAQTPFIISRANAELHFLSCNQSLSVAPPGFRGLPCDNTTSVRLAGYGEHAVASYRLPPGCSSTVVPILERPDGSSAGYVASMRDGFLLEWTVVSGDCPQCIASGGECTYGAKTCGLTAIAPTGCILRSVASLGSQKSTERVGGQGSISLSATASLILTCLIWITYRQKEKGSLFTLQKYVANESKIEEVLKGYDSLSPKRYNYSELKKITRSFKDKLGQGGYGMVFKGVLQDGRMVAVKLLTGTKGNGEEFLNEVISIGRTSHVNIVSLLGFCLQGSKRALVYEHMANGSLDKYIYSEEPKVAIGWEKLQQIAIGIARGLEYLHCRCNTRIIHFDIKPHNILLDEDFCPKVADFGLAKLCRLKDSALSMAEARGTVGFIAPEVFSRGFGVVSTKSDVYSYGMLLLELVGGRRHVNETTSHSSETHFPNRIYDCLVKDLQTHVVMTEAEEIAKLFTIVGLWCIQTNPGNRPSISRVIEMLEKNINELEVPPKPFLS
Function		LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 [UniProtKB/Swiss-Prot:F4HQ22]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_01g0002500	OsKeNa_01g0002500.01	Chr01	1912706	1917634	+	NAM
CDS seq	atgccgcctcctaccttgttgctgttattcatcacctacctcgcttgggagagccaagcagtgaggacgtcggcagatgcacatccagaagaaggctgcgcggccagtactgtatgtggcaaggtgaccatctcgtcgccgttcgccgtcgtgccggagcaggcaacggagagcaaatgcggctggcttggattccaggttatctgccgcaacgacactccatacctcggctactacaagctcggttatcggatccaggtcctcgacatcttctacggcaacaattcgttgctcgtctctgacatccacaagctcggtgacttcgatgtcttctccggcgtcagcaaagaatacctctgccatgttccgacgagcaacacctactccaaggtcgccctcccgttctccatcagcaccaccaatctcaacctcttcctgtacaattgcaataagacgcttgtgccgcgggacggagacggcgacctcgtggagacgatatgcggcaacaagacgtttgctcgcgtaggagggaattacagtgtttcgggcgattacgcggcgttttacatggaaggctgcaatgctaccgtcgtgccggtgctgggcacggacgcgaggagctatgagcagctcatccgcaacggcttcctcttgacatggcaagggccgccgtcatctggtaagttcaccatctacctgatcaccatgattccgctccagctgctgctgctgctggcggtcactaccatcctcaagttgacgtcgccggccagctcggtgaactcgcctaggcctgcgtgctcgcccacgtcatgcggcaacgtgaccatctcctacccgttctggctggaggagcccggccagccgccgtgcgggtccccgtccttccagctcaagtgcaacaccagcggcgcatacctcacccgttccgtccatggcgcctatcgggttgtcgatatcgtcgtcgacaacaacaccttccatgtggtggacgaaaatctcccgctcgccaccggctgcccggcgccgttgttcaatgtatctgacggcatcgcgcagacgccgttcatcatcagcagagccaacgccgagctgcacttcctctcgtgtaatcagtcactttcagtggctcctcccggctttcgtggcctgccttgtgacaacaccacctccgtcaggctcgctggctatggggagcacgccgtcgccagctatcgactcccgccgggttgcagctccacggttgtgccgatccttgagagacctgatgggagtagtgccggctatgttgccagcatgagggatgggtttctactagagtggacggtggtttcaggagattgtcctcaatgcatagcaagcggcggggaatgcacgtacggcgcgaagacctgcggtttgactgccattgctccgacgggatgcatcctcagaagtgtggcgagtttgggaagtcagaagagcacggaaagagtaggaggtcaaggctcaatttcgctgtctgctacagccagtttgattcttacatgtcttatttggattacataccgccaaaaggaaaaaggcagtttattcaccctccagaagtatgtggccaatgaatcaaaaatagaggaagtacttaaaggatatgattctctcagtccaaagaggtataactactcagagctgaagaaaataacaagatctttcaaggataaacttggacaaggtggctatggcatggtattcaaaggtgtcctacaagatggccggatggtagcagtgaagctcttgacaggaacaaaaggcaatggggaagagtttctgaacgaggtaatcagtattggtaggacatctcatgtgaatattgtcagtctgcttggtttttgtttacaaggatctaagcgagcacttgtttatgaacacatggccaatggttcgttggataagtatatctattcagaagaaccgaaagttgccatcggatgggaaaaattgcaacaaatagcaattggcatcgcgcgtggtttggagtatttgcattgcaggtgtaatacccgtataatccattttgatatcaagcctcataacatacttctagatgaagacttctgccctaaagttgcggattttggattggcaaaactgtgtcgcctcaaggatagtgccctctcaatggctgaagcaagaggtacagttggatttattgctccagaagtattttctagaggttttggagttgtgtccactaaatcagatgtatacagctatggtatgctacttctagaattggtaggaggaaggaggcatgttaatgaaactaccagccattccagtgaaactcattttcccaacaggatttatgattgtttagtgaaagatttgcaaactcatgtagtcatgactgaggctgaagagattgccaaactgttcacaatagttggcttgtggtgtatacaaactaacccagggaatcgcccttccattagtagggtcatagaaatgttggagaagaacatcaatgaattggaagtgccacccaaaccattcctgtcatga More
Protein seq	MPPPTLLLLFITYLAWESQAVRTSADAHPEEGCAASTVCGKVTISSPFAVVPEQATESKCGWLGFQVICRNDTPYLGYYKLGYRIQVLDIFYGNNSLLVSDIHKLGDFDVFSGVSKEYLCHVPTSNTYSKVALPFSISTTNLNLFLYNCNKTLVPRDGDGDLVETICGNKTFARVGGNYSVSGDYAAFYMEGCNATVVPVLGTDARSYEQLIRNGFLLTWQGPPSSGKFTIYLITMIPLQLLLLLAVTTILKLTSPASSVNSPRPACSPTSCGNVTISYPFWLEEPGQPPCGSPSFQLKCNTSGAYLTRSVHGAYRVVDIVVDNNTFHVVDENLPLATGCPAPLFNVSDGIAQTPFIISRANAELHFLSCNQSLSVAPPGFRGLPCDNTTSVRLAGYGEHAVASYRLPPGCSSTVVPILERPDGSSAGYVASMRDGFLLEWTVVSGDCPQCIASGGECTYGAKTCGLTAIAPTGCILRSVASLGSQKSTERVGGQGSISLSATASLILTCLIWITYRQKEKGSLFTLQKYVANESKIEEVLKGYDSLSPKRYNYSELKKITRSFKDKLGQGGYGMVFKGVLQDGRMVAVKLLTGTKGNGEEFLNEVISIGRTSHVNIVSLLGFCLQGSKRALVYEHMANGSLDKYIYSEEPKVAIGWEKLQQIAIGIARGLEYLHCRCNTRIIHFDIKPHNILLDEDFCPKVADFGLAKLCRLKDSALSMAEARGTVGFIAPEVFSRGFGVVSTKSDVYSYGMLLLELVGGRRHVNETTSHSSETHFPNRIYDCLVKDLQTHVVMTEAEEIAKLFTIVGLWCIQTNPGNRPSISRVIEMLEKNINELEVPPKPFLS More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0137200	SBH	0.000000	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g04480	SBH	0.0	0.0	0.187849
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0137250	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0002590	SBH	0.146139	0.000000	0.280715
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0002540	RBH	0.038586	0.000000	0.469836
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0002660	SBH	0.086951	1.405004	0.239140
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0002480	SBH	0.008902	0.005864	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0002570	RBH	0.0	0.0	0.510271
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0033300	SBH	0.3599865	0.7996085	1.4546695
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0002580	SBH	0.105404	0.0	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_01G0015200	SBH	1.617323	0.890693	1.779883
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0002390	RBH	0.0	0.039563	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0002560	SBH	0.075790	0.585201	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0002670	SBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0002590	SBH	0.000000	0.000000	0.017706
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0002500	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G002700	SBH	0.364793	0.274939	0.455609
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0002580	SBH	0.259614	0.0	0.677685

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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