Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0024930 | OGI:11068020 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:30564796-30566519 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGGTGACAACTGGGAAATCAGCATCAGCAGCAAGAACAATTCATGATCCCCATATGCCCAACCATAGGTTGAATGATGTGTGTGCTGATAGGCCTTCCTAAAGGCACCAGAGAGACATATCTCATGCCAAATACACCATCCAACCATCAGATTTTGCAGCAAGCCCTCAGTGGAATTAATTGTTCTACTCATGAACTGGGCAACACTATAGTTCAAGGAGACTTGATGAGACTCACCATATAAATTCAGTGTTTCAATTTCAGCTTTAACATTTGTTTGAATAGGTGGCGGCCAGAGTTGTAAGAGCTTTACCACCACGCCTCCGCTGCCTTGACAAAGCTGTGGATCAGGCCATGGTAAAGGCCGAGAACCTGAGGTCATCTCAGCTTTGTTCCATGGAATTGTTGCTCTCCAAGGTGGTACTGGTGGAGGGCTAGCTGTGTATTCTGAGCTCCGGTCAAAGCAACCATAGAGTACTTCCAATTTCGATGAAACGAAAGAGAGGCCTACAACTCCAAAGTAGTCACGGCTCAAGCACCAACTCCAGTTCCTGGGAGGAATTGCATTGATGATTAAAAATGGATCTCTGAAGCATAAATACATAGCGGTGAACATGGTATCCACTTCCATGAGCTCCATCCACTCCTCCTTGGCCATGTCTTTGCCATCATCATCATCAGCCAACTGGTTCTCACACTTCATTGAACACTCGATGGTTGTTCCCATGCCAACCTTGGCTATGTCAACAAGGTTAGTTGAGCCGGCCTCTGTACTGACCTTGGTGTCGCGAAATGCCTCTAGCATCCGATCGATCTTGGTGCACAGGTCTTGAATGGTCTTGTCTAAGTTCTCCACCGCCTTGTCCATGTCAGTCTCAGCCTTCTTGGTCTCGTTGAAAGGAACCGATGTCACTATGGCTGCTGATGTAATTGAGGGTACAGATGAAGCTGTAGTAGCAGGGAACACACGTTCTGGTGCAGCAGCAGTACTCTTGGCCACTGGCCTTGCGGTGGCGCTACTTGGTACCATCGTCGAACAGGTGGTGTGCGTGGCGGTGGCGCCATCTCCAGGGAACATCTGGACGTGCTGCACATCCAGTAAGCAACCCCCGTCGTAGATGTCGCGACCGTGGGTGGCAGACCGAGCCCTCTCCACGTCATGGCTGGACATGAACGACACAAGAGCCTTGACTTGCCATGTGCTCACCGCAAGAACCTGCACCGCCACTGCTCCATAGGTATCGTACACTTGATGCAACACCTCAGATGTCACTGGATATATGATCTGGCTCACAGTGACGCGAAGGACAGCAGCTGAGTCAGCTCTTGGACAGCTCGACATTTCATCGAACAGGTGGTGGGCATCTCCTCCAAAGACACCACCACCAAGTTGTTGGCTGTTCCTCTGACCACCAGCGCTCTCCCACTTCATCTCCACACAAGAAACCCCACGAATCGACTGCTCTGATACCATATTGTCACGATCCGTCAACTCATTCACAGATCAATATCAACACAGGAAGGAACCAACGATCCACAGCAGAAATCACTCAAGTAATTGGGATACAATTGCAAGGAATATAGGAGTGAAGACTAGAAAGGGAAGCAAGGGACTGGTATTAGAGAAGCAGAGCTTGAGATTGGAAGAACAGCAGGAGTGGGAAAGAAATCCGGAGGAGAAGGAGGAAGAAGAGGCAGCAGCCACAAGTTCTATTCATCGATC
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| CDS seq | ATGGTATCAGAGCAGTCGATTCGTGGGGTTTCTTGTGTGGAGATGAAGTGGGAGAGCGCTGGTGGTCAGAGGAACAGCCAACAACTTGGTGGTGGTGTCTTTGGAGGAGATGCCCACCACCTGTTCGATGAAATGTCGAGCTGTCCAAGAGCTGACTCAGCTGCTGTCCTTCGCGTCACTGTGAGCCAGATCATATATCCAGTGACATCTGAGGTGTTGCATCAAGTGTACGATACCTATGGAGCAGTGGCGGTGCAGGTTCTTGCGGTGAGCACATGGCAAGTCAAGGCTCTTGTGTCGTTCATGTCCAGCCATGACGTGGAGAGGGCTCGGTCTGCCACCCACGGTCGCGACATCTACGACGGGGGTTGCTTACTGGATGTGCAGCACGTCCAGATGTTCCCTGGAGATGGCGCCACCGCCACGCACACCACCTGTTCGACGATGGTACCAAGTAGCGCCACCGCAAGGCCAGTGGCCAAGAGTACTGCTGCTGCACCAGAACGTGTGTTCCCTGCTACTACAGCTTCATCTGTACCCTCAATTACATCAGCAGCCATAGTGACATCGGTTCCTTTCAACGAGACCAAGAAGGCTGAGACTGACATGGACAAGGCGGTGGAGAACTTAGACAAGACCATTCAAGACCTGTGCACCAAGATCGATCGGATGCTAGAGGCATTTCGCGACACCAAGGTCAGTACAGAGGCCGGCTCAACTAACCTTGTTGACATAGCCAAGGTTGGCATGGGAACAACCATCGAGTGTTCAATGAAGTGTGAGAACCAGTTGGCTGATGATGATGATGGCAAAGACATGGCCAAGGAGGAGTGGATGGAGCTCATGGAAGTGGATACCATGTTCACCGCTATGTATTTATGCTTCAGAGATCCATTTTTAATCATCAATGCAATTCCTCCCAGGAACTGGAGTTGGTGCTTGAGCCGTGACTACTTTGGAGTTGTAGGCCTCTCTTTCGTTTCATCGAAATTGGAAGTACTCTATGGTTGCTTTGACCGGAGCTCAGAATACACAGCTAGCCCTCCACCAGTACCACCTTGGAGAGCAACAATTCCATGGAACAAAGCTGAGATGACCTCAGGTTCTCGGCCTTTACCATGGCCTGATCCACAGCTTTGTCAAGGCAGCGGAGGCGTGGTGGTAAAGCTCTTACAACTCTGGCCGCCACCTATTCAAACAAATGTTAAAGCTGAAATTGAAACACTGAATTTATATGTTGTCACCTGA
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| Protein seq | MVSEQSIRGVSCVEMKWESAGGQRNSQQLGGGVFGGDAHHLFDEMSSCPRADSAAVLRVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDVERARSATHGRDIYDGGCLLDVQHVQMFPGDGATATHTTCSTMVPSSATARPVAKSTAAAPERVFPATTASSVPSITSAAIVTSVPFNETKKAETDMDKAVENLDKTIQDLCTKIDRMLEAFRDTKVSTEAGSTNLVDIAKVGMGTTIECSMKCENQLADDDDGKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRDYFGVVGLSFVSSKLEVLYGCFDRSSEYTASPPPVPPWRATIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVVKLLQLWPPPIQTNVKAEIETLNLYVVT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0024930 | OsIR64_11g0024930.01 | Chr11 | 30564796 | 30566519 | - | NAM | ||
| CDS seq | ATGGTATCAGAGCAGTCGATTCGTGGGGTTTCTTGTGTGGAGATGAAGTGGGAGAGCGCTGGTGGTCAGAGGAACAGCCAACAACTTGGTGGTGGTGTCTTTGGAGGAGATGCCCACCACCTGTTCGATGAAATGTCGAGCTGTCCAAGAGCTGACTCAGCTGCTGTCCTTCGCGTCACTGTGAGCCAGATCATATATCCAGTGACATCTGAGGTGTTGCATCAAGTGTACGATACCTATGGAGCAGTGGCGGTGCAGGTTCTTGCGGTGAGCACATGGCAAGTCAAGGCTCTTGTGTCGTTCATGTCCAGCCATGACGTGGAGAGGGCTCGGTCTGCCACCCACGGTCGCGACATCTACGACGGGGGTTGCTTACTGGATGTGCAGCACGTCCAGATGTTCCCTGGAGATGGCGCCACCGCCACGCACACCACCTGTTCGACGATGGTACCAAGTAGCGCCACCGCAAGGCCAGTGGCCAAGAGTACTGCTGCTGCACCAGAACGTGTGTTCCCTGCTACTACAGCTTCATCTGTACCCTCAATTACATCAGCAGCCATAGTGACATCGGTTCCTTTCAACGAGACCAAGAAGGCTGAGACTGACATGGACAAGGCGGTGGAGAACTTAGACAAGACCATTCAAGACCTGTGCACCAAGATCGATCGGATGCTAGAGGCATTTCGCGACACCAAGGTCAGTACAGAGGCCGGCTCAACTAACCTTGTTGACATAGCCAAGGTTGGCATGGGAACAACCATCGAGTGTTCAATGAAGTGTGAGAACCAGTTGGCTGATGATGATGATGGCAAAGACATGGCCAAGGAGGAGTGGATGGAGCTCATGGAAGTGGATACCATGTTCACCGCTATGTATTTATGCTTCAGAGATCCATTTTTAATCATCAATGCAATTCCTCCCAGGAACTGGAGTTGGTGCTTGAGCCGTGACTACTTTGGAGTTGTAGGCCTCTCTTTCGTTTCATCGAAATTGGAAGTACTCTATGGTTGCTTTGACCGGAGCTCAGAATACACAGCTAGCCCTCCACCAGTACCACCTTGGAGAGCAACAATTCCATGGAACAAAGCTGAGATGACCTCAGGTTCTCGGCCTTTACCATGGCCTGATCCACAGCTTTGTCAAGGCAGCGGAGGCGTGGTGGTAAAGCTCTTACAACTCTGGCCGCCACCTATTCAAACAAATGTTAAAGCTGAAATTGAAACACTGAATTTATATGTTGTCACCTGA
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| Protein seq | MVSEQSIRGVSCVEMKWESAGGQRNSQQLGGGVFGGDAHHLFDEMSSCPRADSAAVLRVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDVERARSATHGRDIYDGGCLLDVQHVQMFPGDGATATHTTCSTMVPSSATARPVAKSTAAAPERVFPATTASSVPSITSAAIVTSVPFNETKKAETDMDKAVENLDKTIQDLCTKIDRMLEAFRDTKVSTEAGSTNLVDIAKVGMGTTIECSMKCENQLADDDDGKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRDYFGVVGLSFVSSKLEVLYGCFDRSSEYTASPPPVPPWRATIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVVKLLQLWPPPIQTNVKAEIETLNLYVVT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.129266 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0608000 | RBH | 0.360628 | 1.298640 | 1.123695 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54790 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0608000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020440 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036600 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036440 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036050 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036250 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0399300 | RBH | 1.926118 | 1.7607425 | 0.708773 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036040 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0579800 | SBH | 0 | 0 | 0.0069945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036300 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036130 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022500 | RBH | 0.140175 | 0.0 | 0.135099 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035950 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036560 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036310 | SBH | 0.0 | 0.0 | 0.0 |
