Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0608000 | OGI:11068020 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:23467539-23471956 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCTCTCTCTCTCTCCTCTCGCTCTTTCTTTCTCTTGGCCGAGCGGAGCAGCAGGGGCGGGCTGGCACGGCGGGGCGGCGCGGAGGGGAGAGGGAAGGGCGGCGCCGGGCAAGGAAGGGGAGGAAGGTGGGGGCGGCGGCGGCGGTGGAGGCCCTCGCGGCCGGCTCGACCTGGTGAGCTCTCTCTCTCTCTCTGGAACACGAAATGTCGTCTGCTCAGCCTCTATTAGGGCATCGATCTGATGAGGGCCTCCACCACCACTTTGCCGAGTTGGGATTTATTTCAGATTCTACACGTACCTAGCCCTTTGTGTTAGAGAGTATATAGAATGGAACCCTATAATATATAGAATCGAACCCTTTGTGTTAGAGATTTAAAATAGAATGCCATCTAATCTGTTTTTCTGATCTTGAGAGATCTGTCGATTTTTTTATATGATATGATGAAAAGTTTTAGTGTCAGCAGGTATCAAAGATTATTGTGATCTAAATGCAGTTGTCTACCTTCATCCAATGTTTCTATAAAATAAATTATGGGCTGCACTAGCTATGTAGTGCTAGAAGTGAACCATTTAACTTTCGCCGGATTGAAGTGAACCATTTACTCTGTAATGGCTTTGGTTTAGCTAGAAGTCAACCATTTTACTTTGTAAGGCCTTATTCGGATTAGAGGATTTCTAGAGGATTTTTGAAGGAATCCTGTTCAATAGGAATTTTTCCTTTCCTATCATTCGGATAGCAAAAGTGGATCACAGGAAAACCAAGGGAAACTTTCCACCGCCCTTGATTCCAAGGGAGAAACGCAGGAAAAAATACATGGACTCTGACCTCTTTTTTTCATTTCCTTCACGTAAGACCGAGGAAATCAAGCCCTAATCAGTTGGAGTGACATGATGGGACTAATATTTTATTGCTTAATTAGACTATAATCTATGAGATTACTGTTGATTGGAAAATTCCTATAGTTTATATATTCCTGTATTCCGAACGCTCCACACCATCAAATTCCTATGTTTTTCAATCCTACGTTTTGCACATACAATCCTATAGTATTCCTGTGTTTTTCCTATTCCCATGTTTTTCCAATCCTTTAGTCCGAACAAGCCCTAAATGTCTTTGGTTAAGAAAAGGTTGGTAACCATTAACCAATGCTCCCTGTATTTAAACATGTTGTCATTTAAACAGCTCCTATTTTGTCATGTCCTCACTATAAGAGTAATGATTATGTCTTATGGTTAAATCTAATGCTTTGTTGTTCAGCGAGAGTATGGATCTTTAATTTTATTCGCCCACATATGCTTATTGGTAACGCTTTGTTGGACTCCTGATAGGGCGCGCAATGCGTGCAAATTGTCTAGTTTAATTTGTGTTTTATTTGGTTGGCCTTGGCCCTATGCACTTATGCAGTTAACGTTTTCTCCAATGCGAATTTGCCACGTATTTGGTTGGATGTCAGGATGCACATTGCTGGGATTAATTTAAGGGATGATGACTGACTGCATCACTTCAGCTTTGACTTATGATTTTGTTTAATTTGGATGTTGGCACAGGGGCCGAGCATCCCGCATTGCAATAAGCAGACAACTGGACTAGTCCAAAGAGTTGTACATGAGCTTTTTCAATCTCTACAATCATCAGAAAGCATCGCTATGTGGAGTGTGAAGTTGCCGATGGTAAACGTTCCAGCCTCATGTTCTGAATTTGAACCCACATCACTAAATCTTTACTCACATTGATATGCCATTTCTCAGGTGGAGTATCTGGAATAAGTAAGGTCAGTGTTTGTCATGGGCATTGGGCTGGAAGGCAGAGACCCATAGGCAGCCCATATCAATTAAGTTAGGACAGCATTATTTGTTAAGTTGAAGATAAGATTAGATTGAGTTAGAGATAAGATTAGATTGAATCCTTACTTAGGGGTCAAGCTATGCCATCTATATAAGGATGGGATTGTGTCTATTATCATCAAGTAATGAATATCAATTAGTCTAACCTCTCCATCCCAATAATGTTCTTCTCCGTAGCCTAGATCTACATCCCTTCTCCAAGAGCCGACGCCACCTGGCTATCTTCCCGGCAGTGTTTATCCTGTCATGGCCTCGGGTCATGACAACTTGGTATCAGAGCCACTCACCATAGCTTCTGATGCCGAGTGAGTTCTCCGTGTCACGGTGAGTCATCTATTGTACCCGGTGGATGAGTATCTACTCCACCAATTGTTTGATGGCTATGGAGTAGAAAAGAAGATTGAAGTGCACCAGATGGGAACATATGTGGAAGCCTCTGTTCCGTTTCAAACTCGAGCAGCCGCTGAGCATGCTTGGAACCTCAACGGCCGTGCCATCTATGATGGTTGTTGGTTGGACATACAGTGGGAGCAACCGTCCAACAACTCCACGACACCGGTGACATCTCTCTCCATGATCATCACGGAGTGGAAGGAAGACATCAAGGAGTTGAGGGCTGTCCTGCAGGACTTGGTAGCATTTTTGCAGGAGGAGCTGGCAAAAGAAAAGGAAGAAGGGCGGCAATGGGACTAACGGTGACGCCGGCGCTTGATATGCCATCAATTCAGTCAATCCGTCCAGTGGCCTCCATGTCGTCACAACTTCAAGATCTCCAAGCGAGCAGATCTGCGTCACAGGCCATGCCAAGGCGGCCATCGACCTCTTGGAGTTGGACTTGGCAACGGCGTCATCGTCGGCAAGGTGGAGTGATGGAGGCGAGCAGAGCCGTTGTTGTGGGCCCACGAGGACGACGAATGATGGACGAACTATTTCCGCGAGCTCTAGATGCGGCAGCGGCGGCGCTGATCTTGGAGGTGGCAGTTGGTGGGTTGGATGGGCGGCACGTCTTGCTGGGCGAGAAAGAAACACATCAACGCCATTCTTTTCACACAGTAGGTTCGCGTCCTCATTGTTTGGAGGCGCTACGGACGAGAGAAGCTGACGATAGGGTTTTTTCTCTGCTTCTAATGGGCCGACAACTATTCATTTGGGTCGATCAAGTGGAGTGGCCTTCCAGTGCCGCAACTCATGGCTTGGCTGTTGGGTTGGCCAGGTAGACCTCGGCTGCAGACTAACGGGCCCATCTTGGATGTGAGACCTTGGCCCATCTACAACATCCAAGATATCATGTGAGATAAGTAGTATTAAATTTAAATATAGAAAAGTGGTGTTTGTTTTGAAAGAGTAGTGTCTAGTACTAGTTTCTTGATGATGTGGAGTTTATGTAAACTATGTCTAGTGTCTTGGGTTGGGACTAGCCGTAGAATTTATATGGAGTTGCATTGGTTCCAGGCTTGTGGCACGGCATGGCCTCGTCCTTTCTTTACGAGACGTAGGACGGGATCCACCTCCTGCTAGTAGAACATATTTTTTCGTATTGGCTTTATCTTCTATTCCAATTAATCTAATAAGTCGAGATGTAAAAAGCTTATGTTATCTTAGATTGGAGTCATTTGAGTTTAGAAGTCCGTGTTGCAGCTCGAGGACGAGCTGCTCAAAAGGAGGGGTATAATGTCATTGGCATTGGGCCGGAAGGAAGAGGCCCATATGCAGCCCATATCAATTAAGTTAGATATAAGATTAGATTGAGTTAGAGATAAGATTAGATTGAATCCTTACTTAGGGGTCAAGCTATGTCATCTATATAAGGATGAGATTGTGTCTATTATCATCAAGCAATGAATATCAATTAGTCTAACCTCTCCCTTCCAATAATGTTCTTCTCCCTAGACTAGATCTACATCCCTTCTCTAGGAGCCGACGCCGCCAGGCTATCTTCCTGGCGGTGTTTATCCCGTCATGGCCTCTAGTCATGACAGTGTTGTTGAGAATATTTTCTTATGCTTTCTCTGTACAGATTCGAATGTTAGAGAGTATCAAACTTTATTTCATTGTATCTCAGGGACCTTCTTGACTTGTCCAAAGACAACCTATAGATCAAGGAGAGTAAAACTCAAGGGATCTACATTTCTAGAGCAACAGAAGTAAGAAAAAAGTGCTTAAGATATGTCCTTGTGTTTTCAATTTGACATAGGAAATTTGCACCTAGGAATTTAGACTTAGGACATATATATGCAAATGTTTTCAATTTAGACTTGGGAAATTTAGACTTAGGAATTTCTGTCTTAGGATATATTTGCAAATGTTTAGGATTTAGACTTAGAAGGTTTTGAACTTAGGATTTTTAGACTTAGGTATATATATTTGTAAATGTGAATGATTTGGCTATGAATATGAATGTGCCTATATGCAAATGTGATGTGAATGTGAATGTGGCTCTTTGTTGGTGAATGCATGTGAATTGTGTGATTTGGATTATGTGGTTGTGAATATAAAGCATATTGGAATTGTCAGGTGCTGCTATTTGTATGTGAAATTGTCAGGTATTGCTATTTTTAATTTTTTTTTACCC
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| CDS seq | GTTCTCCGTGTCACGGTGAGTCATCTATTGTACCCGGTGGATGAGTATCTACTCCACCAATTGTTTGATGGCTATGGAGTAGAAAAGAAGATTGAAGTGCACCAGATGGGAACATATGTGGAAGCCTCTGTTCCGTTTCAAACTCGAGCAGCCGCTGAGCATGCTTGGAACCTCAACGGCCGTGCCATCTATGATGGTTGTTGGTTGGACATACAGTGGGAGCAACCGTCCAACAACTCCACGACACCGGTGACATCTCTCTCCATGATCATCACGGAGTGGAAGGAAGACATCAAGGAGTTGAGGGCTGTCCTGCAGGACTTGGTAGCATTTTTGCAGGAGGAGCTGGCAAAAGAAAAGGAAGAAGGGCGGCAATGGGACTAA |
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| Protein seq | VLRVTVSHLLYPVDEYLLHQLFDGYGVEKKIEVHQMGTYVEASVPFQTRAAAEHAWNLNGRAIYDGCWLDIQWEQPSNNSTTPVTSLSMIITEWKEDIKELRAVLQDLVAFLQEELAKEKEEGRQWD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0608000 | OsNip_11t0608000-01 | Chr11 | 23467539 | 23471956 | + | RAP2018-11-26 | ||
| CDS seq | GTTCTCCGTGTCACGGTGAGTCATCTATTGTACCCGGTGGATGAGTATCTACTCCACCAATTGTTTGATGGCTATGGAGTAGAAAAGAAGATTGAAGTGCACCAGATGGGAACATATGTGGAAGCCTCTGTTCCGTTTCAAACTCGAGCAGCCGCTGAGCATGCTTGGAACCTCAACGGCCGTGCCATCTATGATGGTTGTTGGTTGGACATACAGTGGGAGCAACCGTCCAACAACTCCACGACACCGGTGACATCTCTCTCCATGATCATCACGGAGTGGAAGGAAGACATCAAGGAGTTGAGGGCTGTCCTGCAGGACTTGGTAGCATTTTTGCAGGAGGAGCTGGCAAAAGAAAAGGAAGAAGGGCGGCAATGGGACTAA
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| Protein seq | VLRVTVSHLLYPVDEYLLHQLFDGYGVEKKIEVHQMGTYVEASVPFQTRAAAEHAWNLNGRAIYDGCWLDIQWEQPSNNSTTPVTSLSMIITEWKEDIKELRAVLQDLVAFLQEELAKEKEEGRQWD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.360628 | 1.298640 | 1.123695 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g30270 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0608000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020430 | RBH | 0.0 | 0.0 | 0.315207 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024930 | RBH | 0.129266 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020160 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019610 | RBH | 0.244818 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0011120 | RBH | 0.946158 | 2.528670 | 0.000000 |
