Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g30270 | OGI:11068020 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:17466818-17469560 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTCATACTCATCTATGTTTTTTTGCTGCACCGCCACTTCGTGCTCCACCATGCAGGCTGCCGGCGGGATCAACTGAATTGAAGGCATATCAACCGTCGGCATCATGGCTAGTCCCGTTGCCGCCTCTTCTTCCTTCTCCTTTGCCAGCTCCTGCAGCAAGGCTGCCAAGTCCTGCATGATAGCCCTCAACTCTTTGATGTCTTCCTTCCACTCCGTGATTGTAATACCCCGTATATTAAAAGATACTTAGTTTTGTAGTTTGGTTTGACTTGTTTAAAATAAAGATGTTAACAAAAATAAATAAAAGAAAATACCTTTTGAAGTAGGCCAACATGAGAAGGCCCATAAACCCAGCCCATTAGTTCTCCCCTAAAACCTAGAGAGAGGGGAACTGAATCCCACCTCCCCTCATGGTGCCGCCACCCCTCTCCCTTGCCGGCGCCTCCTTCCTCCCCTCCTCCTGTGTTCGCATCTCTCGCCTCTACAGCAAATTGCTCTCTCTAGATCTCCACCTTCATAGCTTGGATCAAGAAGCGAAGTAGAAAACGGAACGAGGAGGAGGAGAGGAGTAGAAGGAGGGGTTAGACCGGAGTCTCCCCTATTGTCTCCTCACAAGTTCTCTAAAGAAACCCTAGGTGAGGCTTATTCCCTTGTTGTATCAGTTGTTCTAGCATGGCTTTAGTGCTTTAATTCGTGGTTAGGGAAGGCTAGAGAAGGAGTTTGGGTAGTTGCGGTTCAGTTTGTTGCAGTTCTGCATGTGGGCAGATTTGCAGTGCTTCAGTGTTTCGATGTTTCGGGGCTCTAAATGTTATTTTCTGCAAAAGTGTATAACTAGGAAGTTGTAGATAATGTTTGGATCTATCTCTGACCAAAGGATGAGATTTTATCTCAAGTGGTTTAGGAGATATAATTTTTTTAGTATGACTATTGTTTTTGTGTCATAATTTGGATAGTAGTAGATTGAACTGTTTTTGGAGAGGTTAAACAGTGGAATCAGCTAGGCTGCCTATAGACAAAGTTGTAAAGGTTTTTCTTAGCTTTCCATATTGGAAAAGTACACCCTGATTGGGTGAGTAGAACTCCAGTTATGGTTTTGGTAGTGTGGACAGTCTAAAATTCTGGATAGATTCTGAAGCCTGCTTTCAAGCACAAATTAGACCATTTTTATGGCAGAAGAAAAATATGCTTTCTACATCAAAGTTGTAGGTATTGTTCTTTAGAATTTCAAAAAATATATATTTTTAGTCATAGCCTTTTCATATTTCAAGATATAAAGGTTTGAAGCAGCAGTCTTGTGTATAGTCTAAGCGGCATTCCTTGTTATTGAGTTTTGATGGGATGGGGCAGTAGGTTCACCTTTTTCATTGTTTTATACGCATGTTTGAATGTGTTTGCTGAGGTTTTGTTTGTGATTAGGTGGTGGTCCATCAGATCGTGCATGATACCAATCCTTCGTTGGAGGCAAGTGCATGACGAACTAATTGTGTGATTTATGGATTGTTTACTCTATCTATTTATATCTGGTATATTTCTACGTGATAGGTAACTGCTTATGTTCATATTATTGTTCACGCCATTTAGATTTCAAGTTGATCTTATGTGTACGATGTTATTCTTGTTTTAATATTCTGGATTCTGATTCTGCTTAAATAATTCAAGTTTCCTGCTTGCCATGGATGTGCAATATGGTTTCAATTTGGTTCTTTGATTCCGGTTTCAATTATTCAAGTACCATGCGTAGTCATGGGAGTGCAATTTGGTTCTTTATTCAAGTTCCTGTGGGTAAGCGTTGATCACGCTTACTTGGCTTTGCTGGCAAATGATAGGATGTATTCACTATTGTCCGGGATGGAAGCTACTATTTCAATTTATGCCTGCCCGGGATGGGAACTACTATCTTCTTTGACTTGGTGTTTGAAAACGTGTTTCTTATTAAAGAAAGAAAGCCTTTTGTTCATGCTTTATTGCCAATGATGTGTATATGTGTTTTCTAGTTCCATATTGTACTTGCTGAGTATTTTTATACTCACTCTTGTGTTTTATTTGGTTTTAGGTACATATTGAGACCGACATGCATGGGAGGAAAGTAGCACCCTTATATACACATTTATCTGCACACTATCAAACTATATTGCCTAGGTCCATAATGATACTTAAACTCTATCATGGTTCGGTCTTGTAATAATCTTTTAGATTTCTAATAGTTTCTTCCCCATGGATTATTAGGATGGATCGTATTGTGGGAATGATATTGTTATTAGTTTAACTTATAATTGCCTGTCGTGGATGTCCATATTTACAGGGGAGATTCTGCCCAAATTTCTAATAATTTTGGGAGTTAGTGGTTTGAGTGTATTTTGGTGTGGCACTCTAGGTACGTGGTTACCTGGGGTGTTACAGTGATGATTGTGGAGAGATATGTCACCGGTGTCATGGAGTTGTTGGACTGCTGCTCCCACTGTATGTCCAACCAACAACAGCCGTCATAGATGGCACGACCGTTGAGGTTCCAAGCATGCTCAGCAGCTGCTCGAGTTTGAAACGGAACGGAGGCCTCCACATGTGTTCCCATCTGGCGTACTTCAATCTTCCTTTCCGCTCTATAGCCATCAAACAATTGGTGAAGTAGATACTCATCCACCGGATATACTAGATGGCTCACTGTGATACGGAGAACTCTATCGGCATCGGAAGCCATGGTGAGTGGCTCTGATACCAAGTTGTCATGACCCAAGGCCAT
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| CDS seq | ATGGCCTTGGGTCATGACAACTTGGTATCAGAGCCACTCACCATGGCTTCCGATGCCGATAGAGTTCTCCGTATCACAGTGAGCCATCTAGTATATCCGGTGGATGAGTATCTACTTCACCAATTGTTTGATGGCTATAGAGCGGAAAGGAAGATTGAAGTACGCCAGATGGGAACACATGTGGAGGCCTCCGTTCCGTTTCAAACTCGAGCAGCTGCTGAGCATGCTTGGAACCTCAACGGTCGTGCCATCTATGACGGCTGTTGTTGGTTGGACATACAGTGGGAGCAGCAGTCCAACAACTCCATGACACCGGTGACATATCTCTCCACAATCATCACTGTAACACCCCAGTGGAAGGAAGACATCAAAGAGTTGAGGGCTATCATGCAGGACTTGGCAGCCTTGCTGCAGGAGCTGGCAAAGGAGAAGGAAGAAGAGGCGGCAACGGGACTAGCCATGATGCCGACGGTTGATATGCCTTCAATTCAGTTGATCCCGCCGGCAGCCTGCATGGTGGAGCACGAAGTGGCGGTGCAGCAAAAAAACATAGATGAGTATGACTAA
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| Protein seq | MALGHDNLVSEPLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTHVEASVPFQTRAAAEHAWNLNGRAIYDGCCWLDIQWEQQSNNSMTPVTYLSTIITVTPQWKEDIKELRAIMQDLAALLQELAKEKEEEAATGLAMMPTVDMPSIQLIPPAACMVEHEVAVQQKNIDEYD |
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| Function | Polypyrimidine tract-binding protein homolog 3 [UniProtKB/Swiss-Prot:Q6ICX4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g30270 | LOC_Os06g30270.1 | Chr06 | 17466818 | 17469560 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCTTGGGTCATGACAACTTGGTATCAGAGCCACTCACCATGGCTTCCGATGCCGATAGAGTTCTCCGTATCACAGTGAGCCATCTAGTATATCCGGTGGATGAGTATCTACTTCACCAATTGTTTGATGGCTATAGAGCGGAAAGGAAGATTGAAGTACGCCAGATGGGAACACATGTGGAGGCCTCCGTTCCGTTTCAAACTCGAGCAGCTGCTGAGCATGCTTGGAACCTCAACGGTCGTGCCATCTATGACGGCTGTTGTTGGTTGGACATACAGTGGGAGCAGCAGTCCAACAACTCCATGACACCGGTGACATATCTCTCCACAATCATCACTGTAACACCCCAGTGGAAGGAAGACATCAAAGAGTTGAGGGCTATCATGCAGGACTTGGCAGCCTTGCTGCAGGAGCTGGCAAAGGAGAAGGAAGAAGAGGCGGCAACGGGACTAGCCATGATGCCGACGGTTGATATGCCTTCAATTCAGTTGATCCCGCCGGCAGCCTGCATGGTGGAGCACGAAGTGGCGGTGCAGCAAAAAAACATAGATGAGTATGACTAA
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| Protein seq | MALGHDNLVSEPLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTHVEASVPFQTRAAAEHAWNLNGRAIYDGCCWLDIQWEQQSNNSMTPVTYLSTIITVTPQWKEDIKELRAIMQDLAALLQELAKEKEEEAATGLAMMPTVDMPSIQLIPPAACMVEHEVAVQQKNIDEYD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0608000 | RBH | 0.360628 | 1.298640 | 1.123695 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0608000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0014100 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0014050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0014080 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0216600 | SBH | 0 | 0 | 0.7690705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013580 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0211500 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0014030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0032810 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0014060 | RBH | 0.0 | 0.0 | 0.0 |
