Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0022500 | OGI:11068020 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:29776967-29780610 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacgcccgtcgaaacacgtctggttctggttctgccacgtaagcgctccactggtcgccgccggcgaggacgaggggaagtatggcaaaagggaagcgcgcggcggcatgggcgctggcggtgctcgacgaagcggagcgcctcggcggtggttgaggagctcccgaagcctttgccatgctgccacccgcccgcttctggcgctccaatggcgcgacggtcggcgcgcgcgacgagatcgagcttgccggctgcggcgccttctcctcattctcgttttcccactgctctgctcaacaggtggaggatgcctgatatgtggccatgaagttagaagaggacaaggcgagggggagtgtcacgatccgtcaactcattcacagatcaatatcaacacaggaaggaaccaatgatccacagcagaaatcactcaagtaattgggatacaattgcaaggaatataggagtgaagactagaaagggaagcaagggactggtattagagaagcagagcttgagattggaagaacagcaggagtgggaaagaaatccggaggaggaggaggaagaagaggcagcagccacaagttctattcatcgatccccttcatgcctgttgcttctttccttttatagtgtatcctttgcctcccctcagcctcaagccagcccaatcaacatagctcacttgacaggcccaggcccatgacattcctccctccatgaatttcggcttgtccccaagccgatacaacacagccaccaggatcccaagtcacccgcaccagtgatgttgtatacaatgccagtttatacctggccaaatgggtcgtgccaagccgggccggcccgagcacggaagtactgtagccggcccaggcccggcacggcacgccagcctgtgggccgtgccggcacggcccgttatcccgtgccgtgtttgggccgatgcctcagcccgtgggctagcacggcacggcacgtttactgtagcgtgccggcacggcacggcccaggcatggcacggcccaccggcccatttatttttcctacgattttctaatttttcccatatatttctcatattttttattttttttccacattttatcctatttgtaccatatattttatgatatatttcctaaattttcctcacatttatcctatatttatcattttttcctttatattatgttttttctgccttttttcttttttttccctcaaatttcaatttttatgggccacatgtactagtgggccggctaccagcccacgtgccactacagtagccgtgccggcccggcacggcccagcaccttcttgggccgtgcttgggccgtggccttggcacgtgggccggcacggcacggcccgctacaggagccgtgcctaacgggccgtgccctagtgggccgtgccgtcggcgtgccgtgtcgtgctgggccgggccgcccgtttggcctgctatatgccagttgcacttgctcctaaagaatcttgcctctttggaattgaacgaatttagctcttaccaaatatttaggccaaccatgactgaattgatgggtagaacaagtgttactcccctcatagttgtgacctacaaaatttgtgatttgtaagaacatgtcctcctcgtaagtccggcaagtgaagcatgtctctgaagattttacttccaaactgagatagactgcaccaagtttcagctgctccttttgtaacaatagcttatatgtctgtccatgttgattccaaagagtaaactcaaaggtacattgcaactgctgtagctcttcatatatacatttccaggAaaaatttagcccttgccctcctgttgcacacaaattgaatacctcatttctccaaagcgaaggaggagccaaagattgcaagttgaccaacttttttgttgagacaataattcccttcaacgaaacctctagctcaaccataatatgaactgggaagagaatcggctgtggccatggttgtggcaccaacagcacagcatcaccattgtttgatctgaattgagtccatgaagtatcacctattacgccattgtttttgctctgaacctgaaatggagttggaacactgcagcaccgagcatggcagttggtacttctctcgggtgacttgcaagtacaaataccatcagcattatcacaactgaataagcaatcacaccatgcatcaggtgacaactgggaaatcagcatcagcagcaagaacaattcatgatccccatatgcccaaccataggttgaatgatgtgtgtgctgataggccttcctaaaggcaccagagagacatatctcatgccaaatacaccatccaaccatcagattttgcagcaagccctcagtggaattaattgttctactcatgaactgggcaacactgtagttcaaggagacttgatgagactcaccatataaattcagtgtttcaatttcagctttaacatttgtttgaataggtggcggctagagttgtaagagctttaccaccacgcctccgctgccttgacaaagctgtggatcaggccatggtaaaggccgagaacctgaggtcatctcagctttgttccatggaattgctgctctccaaggtggtaccggtggagggctagctgtgtattctaagctccggtcaaagcaaccatagagtacttccaatttcgatgaaacgaaagagaggcctacaactccaaagtaggcacggctcaagcaccaactccagttcctgggaggaattgcattgatgattaaaaatggatctctgaagcataaatacatagcggtgaacatggtatccacttccatgagctccatccactcctccttggccatgtctttgccatcatcatcatcagccaactggttctcacacttcattgaacactcgatggttgttcccatgccaagcttggctgtgtcaacaaggttagttgagccggcctctgtactgaccttggtgtcgcgaaatgcctctctagcatccgatcgatcttggtgcacaggtcttgaatggtcttgtctaagttctccaccaccttgtccatgtcagtctcagccttcttggtctcgttgaaaggaaccgatgtcaccatggctgctgatgtaattgagggtacagatgaagctgtagtagcagggaacacgcgttctggtgcagcagcagtactcttggccactggccttgcggtggcgctacttggtaccatcgtcgaacaggtggtgtgcgtggcggtggcgccatctccagggaacatctggacgtgctgcacatccagtaagcaacccccgtcgtagatgtcgcgaccgtgggtggcagaccgagccctctccgcgtcatggctggacatgaacgacacaagagccttgacttgccatgtgctcaccgcaagaacctgcaccgccactgctccataggtatcgtacacttgatgcaacacctcagatgtcactggatatatgatctggctcacagtgacgcgaaggacagcagctgagtcagctcttggacagctcgacatttcatcgaacaggtggtgggcatctcctccaaagacaccaccaccaagttgttggctgttcctctgaccaccagcgctctcccacttcat
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| CDS seq | atgaagtgggagagcgctggtggtcagaggaacagccaacaacttggtggtggtgtctttggaggagatgcccaccacctgttcgatgaaatgtcgagctgtccaagagctgactcagctgctgtccttcgcgtcactgtgagccagatcatatatccagtgacatctgaggtgttgcatcaagtgtacgatacctatggagcagtggcggtgcaggttcttgcggtgagcacatggcaagtcaaggctcttgtgtcgttcatgtccagccatgacgcggagagggctcggtctgccacccacggtcgcgacatctacgacgggggttgcttactggatgtgcagcacgtccagatgttccctggagatggcgccaccgccacgcacaccacctgttcgacgatggtaccaagtagcgccaccgcaaggccagtggccaagagtactgctgctgcaccagaacgcgtgttccctgctactacagcttcatctgtaccctcaattacatcagcagccatggtgacatcggttcctttcaacgagaccaagaaggctgagactgacatggacaaggtggtggagaacttagacaagaccattcaagacctgtgcaccaagatcgatcggatgctagagaggcatttcgcgacaccaagagatccatttttaatcatcaatgcaattcctcccaggaactggagttggtgcttgagccgtgcctactttggagttgtaggcctctctttcgtttcatcgaaattggaagtactctatggttgctttgaccggagcttagaatacacagctagccctccaccggtaccaccttggagagcagcaattccatggaacaaagctgagatgacctcaggttctcggcctttaccatggcctgatccacagctttgtcaaggcagcggaggcgtggtggttcagagcaaaaacaatggcgtaataggtgatacttcatggactcaattcagatcaaacaatggtgatgctgtgctgttggtgccacaaccatggccacagccgattctcttcccagttcatattatggttgagctagaggtttcgttgaagggaattattgtctcaacaaaaaagttggtcaacttgcaatctttggctcctccttcgctttggagaaatgaggtattcaatttgtgtgcaacaggagggcaagggctaaattttTcctggaaatgtatatatgaagagctacagcagttgcaatgtacctttgagtttactctttggaatcaacatggacagacatataagctattgttacaaaaggagcagctgaaacttggtgcagtctatctcagtttggaagtaaaatcttcagagacatgcttcacttgccggacttacgaggaggacatgttcttacaaatcacaaattttgtagagcagtgggaaaacgagaatgaggagaaggcgccgcagccggcaagctcgatctcgtcgcgcgcgccgaccgtcgcgccattggagcgccagaagcgggcgggtggcagcatggcaaaggcttcgggagctcctcaaccaccgccgaggcgctccgcttcgtcgagcaccgccagcgcccatgccgccgcgcgcttcccttttgccatacttcccctcgtcctcgccggcggcgaccagtggagcgcttacgtggcagaaccagaaccagacgtgtttcgacgggcgtaa
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| Protein seq | MKWESAGGQRNSQQLGGGVFGGDAHHLFDEMSSCPRADSAAVLRVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDAERARSATHGRDIYDGGCLLDVQHVQMFPGDGATATHTTCSTMVPSSATARPVAKSTAAAPERVFPATTASSVPSITSAAMVTSVPFNETKKAETDMDKVVENLDKTIQDLCTKIDRMLERHFATPRDPFLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKLEVLYGCFDRSLEYTASPPPVPPWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVVQSKNNGVIGDTSWTQFRSNNGDAVLLVPQPWPQPILFPVHIMVELEVSLKGIIVSTKKLVNLQSLAPPSLWRNEVFNLCATGGQGLNFSWKCIYEELQQLQCTFEFTLWNQHGQTYKLLLQKEQLKLGAVYLSLEVKSSETCFTCRTYEEDMFLQITNFVEQWENENEEKAPQPASSISSRAPTVAPLERQKRAGGSMAKASGAPQPPPRRSASSSTASAHAAARFPFAILPLVLAGGDQWSAYVAEPEPDVFRRA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0022500 | OsLiXu_11g0022500.01 | Chr11 | 29776967 | 29780610 | - | NAM | ||
| CDS seq | atgaagtgggagagcgctggtggtcagaggaacagccaacaacttggtggtggtgtctttggaggagatgcccaccacctgttcgatgaaatgtcgagctgtccaagagctgactcagctgctgtccttcgcgtcactgtgagccagatcatatatccagtgacatctgaggtgttgcatcaagtgtacgatacctatggagcagtggcggtgcaggttcttgcggtgagcacatggcaagtcaaggctcttgtgtcgttcatgtccagccatgacgcggagagggctcggtctgccacccacggtcgcgacatctacgacgggggttgcttactggatgtgcagcacgtccagatgttccctggagatggcgccaccgccacgcacaccacctgttcgacgatggtaccaagtagcgccaccgcaaggccagtggccaagagtactgctgctgcaccagaacgcgtgttccctgctactacagcttcatctgtaccctcaattacatcagcagccatggtgacatcggttcctttcaacgagaccaagaaggctgagactgacatggacaaggtggtggagaacttagacaagaccattcaagacctgtgcaccaagatcgatcggatgctagagaggcatttcgcgacaccaagagatccatttttaatcatcaatgcaattcctcccaggaactggagttggtgcttgagccgtgcctactttggagttgtaggcctctctttcgtttcatcgaaattggaagtactctatggttgctttgaccggagcttagaatacacagctagccctccaccggtaccaccttggagagcagcaattccatggaacaaagctgagatgacctcaggttctcggcctttaccatggcctgatccacagctttgtcaaggcagcggaggcgtggtggttcagagcaaaaacaatggcgtaataggtgatacttcatggactcaattcagatcaaacaatggtgatgctgtgctgttggtgccacaaccatggccacagccgattctcttcccagttcatattatggttgagctagaggtttcgttgaagggaattattgtctcaacaaaaaagttggtcaacttgcaatctttggctcctccttcgctttggagaaatgaggtattcaatttgtgtgcaacaggagggcaagggctaaattttTcctggaaatgtatatatgaagagctacagcagttgcaatgtacctttgagtttactctttggaatcaacatggacagacatataagctattgttacaaaaggagcagctgaaacttggtgcagtctatctcagtttggaagtaaaatcttcagagacatgcttcacttgccggacttacgaggaggacatgttcttacaaatcacaaattttgtagagcagtgggaaaacgagaatgaggagaaggcgccgcagccggcaagctcgatctcgtcgcgcgcgccgaccgtcgcgccattggagcgccagaagcgggcgggtggcagcatggcaaaggcttcgggagctcctcaaccaccgccgaggcgctccgcttcgtcgagcaccgccagcgcccatgccgccgcgcgcttcccttttgccatacttcccctcgtcctcgccggcggcgaccagtggagcgcttacgtggcagaaccagaaccagacgtgtttcgacgggcgtaa
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| Protein seq | MKWESAGGQRNSQQLGGGVFGGDAHHLFDEMSSCPRADSAAVLRVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDAERARSATHGRDIYDGGCLLDVQHVQMFPGDGATATHTTCSTMVPSSATARPVAKSTAAAPERVFPATTASSVPSITSAAMVTSVPFNETKKAETDMDKVVENLDKTIQDLCTKIDRMLERHFATPRDPFLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKLEVLYGCFDRSLEYTASPPPVPPWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVVQSKNNGVIGDTSWTQFRSNNGDAVLLVPQPWPQPILFPVHIMVELEVSLKGIIVSTKKLVNLQSLAPPSLWRNEVFNLCATGGQGLNFSWKCIYEELQQLQCTFEFTLWNQHGQTYKLLLQKEQLKLGAVYLSLEVKSSETCFTCRTYEEDMFLQITNFVEQWENENEEKAPQPASSISSRAPTVAPLERQKRAGGSMAKASGAPQPPPRRSASSSTASAHAAARFPFAILPLVLAGGDQWSAYVAEPEPDVFRRA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.140175 | 0.0 | 0.135099 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0608000 | SBH | 0.360628 | 1.298640 | 1.123695 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44330 | RBH | 0.330243 | 0.421277 | 0.128091 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0608000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020430 | RBH | 0.0 | 0.0 | 0.315207 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0399300 | RBH | 1.926118 | 1.7607425 | 0.708773 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024930 | RBH | 0.129266 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0419700 | RBH | 0.673641 | 0.432586 | 0.125449 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
