Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0036310 | OGI:02084610 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:35456457-35459711 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgcggccgacggggcagggcgccatgggtggaggtgcagcggtgcaggtggcagggtggcgcggcgacacggacggagtcgcgatgggcaacgcaagcgaagaagcagcggcgccggttgatttgcagtgggggcagcacgggcggaggccggatggtggcggggcctccacttcggcgatctccagcacgagcgaaggagcagcggcgcctgcagtgggggtggcgcaggcggagtccggatggtggcggcgcgcagcggaggagcagtggcgggagcagtggggcggcgcggacggcggggcctccactccggcgatctccaactgcagacccggtatgtccatcctctctattccccttggcacagttcagatggtggcgtgagttcgtcggagctgggcagttgggggaatggtgtgaggagagagaaacgccaaatatggcatggagagggtttggtttggaggacatctaaaatggcgtgtgtaatggagactctgctggaccgtgttttttcacctccatacgccaaacatgggatggatgtctggatggaagctctgctgggcttgctctaatttcgatcagcggagggcaggtgaggtgaggtgcgtgttgtgtgtgtgggtgatctttggcacgcctcgtcggcgatattcgtaccaacaactccttagatccgcaaaagattatggcaaattattgatcggtaattagctcctaggaatttgaagaagatgagaaagccagcttttagcttttagttttttttagtgagaaattttatgatcctagaaaaagtattttgatgtatttaaagtttagactaatttttatcaaattttacattagaaagtgtgatacattctggtaaatttaaggatgataaaattacctttttttaattcaataactatttttttacataatgaaatAaaaagaaaaactgtttagagatttatttttttttgggagaagttcttaaaaacaccatcgatactactacctccgttccataatataacaacatagtaccggatgtgacgtattctattactacgtatttgaatataggtttcatgggagtacgatcgagtagccgtttccaagagccttatcctttcgttggagaaagcatgatttttccatgcttttggtcccgtactagcccggaattgtgtcatgtacatgggctgctgtgatgtccttccaggaggctagacaagtgggctggctttgggcccattcggctagggagaaggagactagaaaagaggcaaagcagccagcaaccagggtcatcgatgaatcaattaccagaacgcctcagacgatagcttcttcctccttgctgctgcttcccctctcaattcctattctctagtcccaatctcctggttcctcttgtctaatctctcttcccagactatacctctctttctcctcaattttgtatccctaaacacttatattcttgagtggattgcaatatatcggtggcatttatgtgagagatttggtgtgattgtgttggttcgtgacaatatggtatcagagcagccaattcgtggggtttcttgtgtggagatgaagtgggagagcactggtggtcagaggaactgccaacaacttggtggtggtgtctttggaggagatgcccaccacctgttcgatgaaatgtcgacctgtccaagaggcgactcagctgctgtccttcgtgttaccgtgagccagatcatatatccagtgacatatgaggtgttgcatcaagtgtacgatacctatggagcagtggcggtgcaggttcttgcagtgagcacatggcaagtcaaggctcttgtgtcatttatgtccagccatgacgcggagagggctcggtccgccacccacggtcgcgacatctacgacgggggctgcttactggatgtgcagcacgtccagatgttccctggagatggcgccaccgccacgcacaccacctgtttgacaatggtaccaagtagcgccaccgccaggccagcggccaagagtactgctgctacaccagaacgcgtgttccctgctacaacagcatcatctgtaccctcaattacatcagcagccatggtgacatcggttcctttcagcgagaccaagaaggctgagactgacatggacaaggtggtggagaacttagacaagaccattcaagacctgtgcaccaagatcgatcggatgctggaggcatttcaccacaccaaggtggatttatccttgagcaaggattccactagagatgtggcagcgttgagcgccaacactgatccaacttccatcgcattggaggtcagtacagaggccggctcaactaaccatgttgacacagccaagcttggcatgagaacaaccatcgagtgttcaatgaagtgtgagaaccagttggctgatgatgatggtggcaaagacatggccaaggaggagtggatggagctcatggaagtggataccaagttcaccactatgtatttatgcttcagagatccattgttaatcatcaatgcaattcctcccaggaactggagttggtgcttgagccgtgactactttggagttgtcggcctctctttcgtttcattgaaattggaagtactctatggttgctttgatcggagctcagaatacacagctagccctccactagtaccaccttggagagcagcaattccatggaacaaagctgagatgacctcaggttctcggccgttaccatggcctgatccacagctttgtcaaggcagcggaggcgtggtggtaaagctcttacaaccctggccgccacttattcaaacaagtgttcgagctgaaattgaaacactgaatttatatggtgagtctcatcaagtctccttaaactacagcgttgcccaattcatgagtagaacaattaattccactaaaggcttgctgcaaaatctgattgttggatggtgtatttggtatgagatatgtctctctggtgcctttaggaaggcctatcagcacacacatcattcaacctatggttgggcatatggggatcatgaattgttcttgctgctgatgctgaattcctatctatcacccgatgcatggtgtgattgtttgttcagtggagctaatgttgatggtaattgcacttgcaagtcacatgagagacgtacccatcgccatgctcggttctatactattccaatttatttcaggttcagagtaacaacaatgatgtactag
More
|
||||||||||
| CDS seq | atggcgcggccgacggggcagggcgccatgggtggaggtgcagcggtgcaggtggcagggtggcgcggcgacacggacggagtcgcgatgggcaacgcaagcgaagaagcagcggcgccggttgatttgcagtgggggcagcacgggcggaggccggatggtggcggggcctccacttcggcgatctccagcacgagcgaaggagcagcggcgcctgcagtgggggtggcgcaggcggagtccggatggtggcggcgcgcagcggaggagcagtggcgggagcagtggggcggcgcggacggcggggcctccactccggcgatctccaactgcagacccgagcagccaattcgtggggtttcttgtgtggagatgaagtgggagagcactggtggtcagaggaactgccaacaacttggtggtggtgtctttggaggagatgcccaccacctgttcgatgaaatgtcgacctgtccaagaggcgactcagctgctgtccttcgtgttaccgtgagccagatcatatatccagtgacatatgaggtgttgcatcaagtgtacgatacctatggagcagtggcggtgcaggttcttgcagtgagcacatggcaagtcaaggctcttgtgtcatttatgtccagccatgacgcggagagggctcggtccgccacccacggtcgcgacatctacgacgggggctgcttactggatgtgcagcacgtccagatgttccctggagatggcgccaccgccacgcacaccacctgtttgacaatggtaccaagtagcgccaccgccaggccagcggccaagagtactgctgctacaccagaacgcgtgttccctgctacaacagcatcatctgtaccctcaattacatcagcagccatggtgacatcggttcctttcagcgagaccaagaaggctgagactgacatggacaaggtggtggagaacttagacaagaccattcaagacctgtgcaccaagatcgatcggatgctggaggcatttcaccacaccaaggtggatttatccttgagcaaggattccactagagatgtggcagcgttgagcgccaacactgatccaacttccatcgcattggaggtcagtacagaggccggctcaactaaccatgttgacacagccaagcttggcatgagaacaaccatcgagtgttcaatgaagtgtgagaaccagttggctgatgatgatggtggcaaagacatggccaaggaggagtggatggagctcatggaagtggataccaagttcaccactatgtatttatgcttcagagatccattgttaatcatcaatgcaattcctcccaggaactggagttggtgcttgagccgtgactactttggagttgtcggcctctctttcgtttcattgaaattggaagtactctatggttgctttgatcggagctcagaatacacagctagccctccactagtaccaccttggagagcagcaattccatggaacaaagctgagatgacctcaggttctcggccgttaccatggcctgatccacagctttgtcaaggcagcggaggcgtggtggtaaagctcttacaaccctggccgccacttattcaaacaagtgttcgagctgaaattgaaacactgaatttatatggtgagtctcatcaagtctccttaaactacagcgttgcccaattcatgagtagaacaattaattccactaaaggcttgctgcaaaatctgattgttggatggtgtatttggtatgagatatgtctctctggtgcctttaggaaggcctatcagcacacacatcattcaacctatggttgggcatatggggatcatgaattgttcttgctgctgatgctgaattcctatctatcacccgatgcatggtgtgattgtttgttcagtggagctaatgttgatggtaattgcacttgcaagtcacatgagagacgtacccatcgccatgctcggttctatactattccaatttatttcaggttcagagtaacaacaatgatgtactag
More
|
||||||||||
| Protein seq | MARPTGQGAMGGGAAVQVAGWRGDTDGVAMGNASEEAAAPVDLQWGQHGRRPDGGGASTSAISSTSEGAAAPAVGVAQAESGWWRRAAEEQWREQWGGADGGASTPAISNCRPEQPIRGVSCVEMKWESTGGQRNCQQLGGGVFGGDAHHLFDEMSTCPRGDSAAVLRVTVSQIIYPVTYEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDAERARSATHGRDIYDGGCLLDVQHVQMFPGDGATATHTTCLTMVPSSATARPAAKSTAATPERVFPATTASSVPSITSAAMVTSVPFSETKKAETDMDKVVENLDKTIQDLCTKIDRMLEAFHHTKVDLSLSKDSTRDVAALSANTDPTSIALEVSTEAGSTNHVDTAKLGMRTTIECSMKCENQLADDDGGKDMAKEEWMELMEVDTKFTTMYLCFRDPLLIINAIPPRNWSWCLSRDYFGVVGLSFVSLKLEVLYGCFDRSSEYTASPPLVPPWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVVKLLQPWPPLIQTSVRAEIETLNLYGESHQVSLNYSVAQFMSRTINSTKGLLQNLIVGWCIWYEICLSGAFRKAYQHTHHSTYGWAYGDHELFLLLMLNSYLSPDAWCDCLFSGANVDGNCTCKSHERRTHRHARFYTIPIYFRFRVTTMMY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0036310 | OsNaBo_02g0036310.01 | Chr02 | 35456457 | 35459711 | + | NAM | ||
| CDS seq | atggcgcggccgacggggcagggcgccatgggtggaggtgcagcggtgcaggtggcagggtggcgcggcgacacggacggagtcgcgatgggcaacgcaagcgaagaagcagcggcgccggttgatttgcagtgggggcagcacgggcggaggccggatggtggcggggcctccacttcggcgatctccagcacgagcgaaggagcagcggcgcctgcagtgggggtggcgcaggcggagtccggatggtggcggcgcgcagcggaggagcagtggcgggagcagtggggcggcgcggacggcggggcctccactccggcgatctccaactgcagacccgagcagccaattcgtggggtttcttgtgtggagatgaagtgggagagcactggtggtcagaggaactgccaacaacttggtggtggtgtctttggaggagatgcccaccacctgttcgatgaaatgtcgacctgtccaagaggcgactcagctgctgtccttcgtgttaccgtgagccagatcatatatccagtgacatatgaggtgttgcatcaagtgtacgatacctatggagcagtggcggtgcaggttcttgcagtgagcacatggcaagtcaaggctcttgtgtcatttatgtccagccatgacgcggagagggctcggtccgccacccacggtcgcgacatctacgacgggggctgcttactggatgtgcagcacgtccagatgttccctggagatggcgccaccgccacgcacaccacctgtttgacaatggtaccaagtagcgccaccgccaggccagcggccaagagtactgctgctacaccagaacgcgtgttccctgctacaacagcatcatctgtaccctcaattacatcagcagccatggtgacatcggttcctttcagcgagaccaagaaggctgagactgacatggacaaggtggtggagaacttagacaagaccattcaagacctgtgcaccaagatcgatcggatgctggaggcatttcaccacaccaaggtggatttatccttgagcaaggattccactagagatgtggcagcgttgagcgccaacactgatccaacttccatcgcattggaggtcagtacagaggccggctcaactaaccatgttgacacagccaagcttggcatgagaacaaccatcgagtgttcaatgaagtgtgagaaccagttggctgatgatgatggtggcaaagacatggccaaggaggagtggatggagctcatggaagtggataccaagttcaccactatgtatttatgcttcagagatccattgttaatcatcaatgcaattcctcccaggaactggagttggtgcttgagccgtgactactttggagttgtcggcctctctttcgtttcattgaaattggaagtactctatggttgctttgatcggagctcagaatacacagctagccctccactagtaccaccttggagagcagcaattccatggaacaaagctgagatgacctcaggttctcggccgttaccatggcctgatccacagctttgtcaaggcagcggaggcgtggtggtaaagctcttacaaccctggccgccacttattcaaacaagtgttcgagctgaaattgaaacactgaatttatatggtgagtctcatcaagtctccttaaactacagcgttgcccaattcatgagtagaacaattaattccactaaaggcttgctgcaaaatctgattgttggatggtgtatttggtatgagatatgtctctctggtgcctttaggaaggcctatcagcacacacatcattcaacctatggttgggcatatggggatcatgaattgttcttgctgctgatgctgaattcctatctatcacccgatgcatggtgtgattgtttgttcagtggagctaatgttgatggtaattgcacttgcaagtcacatgagagacgtacccatcgccatgctcggttctatactattccaatttatttcaggttcagagtaacaacaatgatgtactag
More
|
|||||||
| Protein seq | MARPTGQGAMGGGAAVQVAGWRGDTDGVAMGNASEEAAAPVDLQWGQHGRRPDGGGASTSAISSTSEGAAAPAVGVAQAESGWWRRAAEEQWREQWGGADGGASTPAISNCRPEQPIRGVSCVEMKWESTGGQRNCQQLGGGVFGGDAHHLFDEMSTCPRGDSAAVLRVTVSQIIYPVTYEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDAERARSATHGRDIYDGGCLLDVQHVQMFPGDGATATHTTCLTMVPSSATARPAAKSTAATPERVFPATTASSVPSITSAAMVTSVPFSETKKAETDMDKVVENLDKTIQDLCTKIDRMLEAFHHTKVDLSLSKDSTRDVAALSANTDPTSIALEVSTEAGSTNHVDTAKLGMRTTIECSMKCENQLADDDGGKDMAKEEWMELMEVDTKFTTMYLCFRDPLLIINAIPPRNWSWCLSRDYFGVVGLSFVSLKLEVLYGCFDRSSEYTASPPLVPPWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVVKLLQPWPPLIQTSVRAEIETLNLYGESHQVSLNYSVAQFMSRTINSTKGLLQNLIVGWCIWYEICLSGAFRKAYQHTHHSTYGWAYGDHELFLLLMLNSYLSPDAWCDCLFSGANVDGNCTCKSHERRTHRHARFYTIPIYFRFRVTTMMY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0789700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54790 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0789700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031670 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0031650 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036240 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0549400 | SBH | 0 | 0 | 0.0360975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036030 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0579800 | RBH | 0 | 0 | 0.0069945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036320 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035940 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036560 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
