Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_04g0008670 | OGI:04053280 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr04:15513794-15514081 | ||||||||
| Gene Symbol | OsUPS, UPS, OsPUB41, PUB41, - | ||||||||||
| DNA seq | ATGATGCCGTTGGACGAGGCGGCGGCCAGGGTCTTGGCCTCGTCTAGCTCGATGGGTTCTCTTATCACAATTGCCAAGCACGGGAGCTTGCCCGGAAGGCTGAACGCTGTACTGGCAATCAAGGAGGCCGTGTCGCGGGACGGAGCGTTCGTGGACCTGGCGGATGACAAGATCGTCGACGCGCTGCTCGTGATCATCAAGGCTCTGATCCGCCTGCAGGCCGCCATGGTCGCCACCTACCACCTGGCAAGCTCCGACGAGCGCGTCGCGGCGAGGGTAGCATACTAG |
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| CDS seq | ATGATGCCGTTGGACGAGGCGGCGGCCAGGGTCTTGGCCTCGTCTAGCTCGATGGGTTCTCTTATCACAATTGCCAAGCACGGGAGCTTGCCCGGAAGGCTGAACGCTGTACTGGCAATCAAGGAGGCCGTGTCGCGGGACGGAGCGTTCGTGGACCTGGCGGATGACAAGATCGTCGACGCGCTGCTCGTGATCATCAAGGCTCTGATCCGCCTGCAGGCCGCCATGGTCGCCACCTACCACCTGGCAAGCTCCGACGAGCGCGTCGCGGCGAGGGTAGCATACTAG |
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| Protein seq | MMPLDEAAARVLASSSSMGSLITIAKHGSLPGRLNAVLAIKEAVSRDGAFVDLADDKIVDALLVIIKALIRLQAAMVATYHLASSDERVAARVAY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_04g0008670 | OsIR64_04g0008670.01 | Chr04 | 15513794 | 15514081 | + | NAM | ||
| CDS seq | ATGATGCCGTTGGACGAGGCGGCGGCCAGGGTCTTGGCCTCGTCTAGCTCGATGGGTTCTCTTATCACAATTGCCAAGCACGGGAGCTTGCCCGGAAGGCTGAACGCTGTACTGGCAATCAAGGAGGCCGTGTCGCGGGACGGAGCGTTCGTGGACCTGGCGGATGACAAGATCGTCGACGCGCTGCTCGTGATCATCAAGGCTCTGATCCGCCTGCAGGCCGCCATGGTCGCCACCTACCACCTGGCAAGCTCCGACGAGCGCGTCGCGGCGAGGGTAGCATACTAG
More
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| Protein seq | MMPLDEAAARVLASSSSMGSLITIAKHGSLPGRLNAVLAIKEAVSRDGAFVDLADDKIVDALLVIIKALIRLQAAMVATYHLASSDERVAARVAY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0240600 | SBH | 0.0 | 0.0 | 0.371555 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13740 | SBH | 0.0 | 0.0 | 0.092256 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0240600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009190 | RBH | 0.132433 | 0.914650 | 1.051995 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0010150 | SBH | 0.0 | 0.0 | 0.190982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0010230 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0010150 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009560 | RBH | 2.371711 | 2.407174 | 5.896281 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0123200 | SBH | 0.081103 | 5.007778 | 0.0637245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0261900 | RBH | 0.094034 | 0.0468745 | 0.6234485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0010060 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0010150 | SBH | 0.0 | 1.459962 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0010040 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009400 | RBH | 0.000000 | 0.000000 | 0.121933 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010060 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G010080 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009950 | SBH | 0.0 | 0.0 | 0.0 |
