Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0010150 | OGI:03019720 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:7678922-7680586 | ||||||||
| Gene Symbol | OsUPS, UPS, OsPUB41, PUB41 | ||||||||||
| DNA seq | TTTTAAAAAAATCGTGCAAAAGTCAAATGGGCAGTAAAAGAAGGAATTTACATGCAAAATATTTACAGTGAGGAAAGTAGGAAACTTGTTTTTGCAATTAGATTTACAATCTAGCATGGAAAGCACATCCGCAAAAATCCCCATCAACTATTTTTACAATCTGCATTTCCTAGCTGCTCGCAACTATTTTTACAATGATTCTGAACACTGATCTCAATTCATGACAGCCTATTGAGCCCTCTGAAATCCACAGCGTCGACACACTCCCCCAACCCTTTGTGCTTGTTGAGCATCTTGAGCAGCTCAGTGGCCTTCTCCTTGGTCGCGTCCCTGCAGCCCACCTGCAGGAGGAGGAGAAGCTTCTGGAACGCGCCCACACGCAGCGCCTCGACCAGGCACCCCGTCGCGGCGGCCTCCTCGTCGCCGGAGGAGGCCTTGCAGCCGAGCCGCCACATCGCCGACACGGCGAGCTCGGTGGCCACGTCGGACACGCGGAACATCTTCTTCACGAGGGCCGGCATTGCGAGGGCGTGGCCCCGCGCGCTCGCGCGGCCTTCCTCCGAGGCGAGCATTGCGTCGAACACCGCCAGGGCCTTCTCGGACACGCTCTTTTCGGCGTCTACGAGGGCCTCGATGAGCGTTGGGACGAGCCCCGTGGATGCTACCCTCGCCGCGACGCGCTCGTCGGAGCTCGCCAGGTGGTAGGTGGCGACCATGGCAGCCTTGGTGGCCTGCGGGCAGATCGGAGCCTTGATGATCACGACCAGCGCGTCGACGACCTTGTCGACCTTGTCATCCGCCAGGTCCACGAACGCTCCGTCCCGCGACACGGCCTCCTTGATCGCCAGCACAGCGTTCAGCCTTCCGGCCAAGCTCCCGTGCTTGGCAATGGCGACGAGTGAACCCATCGAGCTAGACGAGGCCAAGACCCTGGCCGCCTCCTCGTCCAACGGCATCATGCAGACCAATGCCGCCAGGACGTCCTCGAGAACGCCCGCCTCCCCGGCGGCGGCGAGAGACTCGAACGCCGCGGCCAGCACGCGCCCCGTGCCGACGGACACGAAGCACCGCCGGTTCCGCTCGCTGTCCCTCGCGAGCGCCCGGACCCTGGCGACCGCCCCGGCGGCGCGCCCCGCCGCGCCGCGCCGCGCCGCCGACTCGGCGACGTCGAACAGCAGCTCGGAGGCCTGCACGGGCGTGACGGGGATCTTGGGCGTGGGGATGCGCTCCACGCCGCGGGACCGGTTGGCGACGCACCAGTCCTGGATGACGCGGCGGATGGCGTGGTTGGGGACGAGGTCCTCGTGCCGGAGCGGCGCGTGGGTGACGGGGCACACCGCGCGCCCGGTGTCCAGCCACGCCTCGATCCCCTCCCTGTCGTACGTGATCCCCGTCGGCGCCGTCACCGGGTCGCGCATCAGGTCCAGCGAGATCGGGCACCGGAAGTGCGCCGGGATCGCCAGCTCCGCCGCCGCGCCGCCACCCCTCTTCTGCAGCAGCGGCGCCGGCGCCTTCGCCATCACCGCCTTCCGCGCCCTCCGCGCCAGCAGCGCCATCCCAAGCTCTCGATCGATCACCGCAGCGCAAGAAGAGAAGCCCAGCGAGAACAGCTGCGTGTTGTGGTGTAAGGCTTTGAGCTGAGAAGAGTTCAATACGGGAGACTGG
More
|
||||||||||
| CDS seq | ATGGCGCTGCTGGCGCGGAGGGCGCGGAAGGCGGTGATGGCGAAGGCGCCGGCGCCGCTGCTGCAGAAGAGGGGTGGCGGCGCGGCGGCGGAGCTGGCGATCCCGGCGCACTTCCGGTGCCCGATCTCGCTGGACCTGATGCGCGACCCGGTGACGGCGCCGACGGGGATCACGTACGACAGGGAGGGGATCGAGGCGTGGCTGGACACCGGGCGCGCGGTGTGCCCCGTCACCCACGCGCCGCTCCGGCACGAGGACCTCGTCCCCAACCACGCCATCCGCCGCGTCATCCAGGACTGGTGCGTCGCCAACCGGTCCCGCGGCGTGGAGCGCATCCCCACGCCCAAGATCCCCGTCACGCCCGTGCAGGCCTCCGAGCTGCTGTTCGACGTCGCCGAGTCGGCGGCGCGGCGCGGCGCGGCGGGGCGCGCCGCCGGGGCGGTCGCCAGGGTCCGGGCGCTCGCGAGGGACAGCGAGCGGAACCGGCGGTGCTTCGTGTCCGTCGGCACGGGGCGCGTGCTGGCCGCGGCGTTCGAGTCTCTCGCCGCCGCCGGGGAGGCGGGCGTTCTCGAGGACGTCCTGGCGGCATTGGTCTGCATGATGCCGTTGGACGAGGAGGCGGCCAGGGTCTTGGCCTCGTCTAGCTCGATGGGTTCACTCGTCGCCATTGCCAAGCACGGGAGCTTGGCCGGAAGGCTGAACGCTGTGCTGGCGATCAAGGAGGCCGTGTCGCGGGACGGAGCGTTCGTGGACCTGGCGGATGACAAGGTCGACAAGGTCGTCGACGCGCTGGTCGTGATCATCAAGGCTCCGATCTGCCCGCAGGCCACCAAGGCTGCCATGGTCGCCACCTACCACCTGGCGAGCTCCGACGAGCGCGTCGCGGCGAGGGTAGCATCCACGGGGCTCGTCCCAACGCTCATCGAGGCCCTCGTAGACGCCGAAAAGAGCGTGTCCGAGAAGGCCCTGGCGGTGTTCGACGCAATGCTCGCCTCGGAGGAAGGCCGCGCGAGCGCGCGGGGCCACGCCCTCGCAATGCCGGCCCTCGTGAAGAAGATGTTCCGCGTGTCCGACGTGGCCACCGAGCTCGCCGTGTCGGCGATGTGGCGGCTCGGCTGCAAGGCCTCCTCCGGCGACGAGGAGGCCGCCGCGACGGGGTGCCTGGTCGAGGCGCTGCGTGTGGGCGCGTTCCAGAAGCTTCTCCTCCTCCTGCAGGTGGGCTGCAGGGACGCGACCAAGGAGAAGGCCACTGAGCTGCTCAAGATGCTCAACAAGCACAAAGGGTTGGGGGAGTGTGTCGACGCTGTGGATTTCAGAGGGCTCAATAGGCTGTCATGA
More
|
||||||||||
| Protein seq | MALLARRARKAVMAKAPAPLLQKRGGGAAAELAIPAHFRCPISLDLMRDPVTAPTGITYDREGIEAWLDTGRAVCPVTHAPLRHEDLVPNHAIRRVIQDWCVANRSRGVERIPTPKIPVTPVQASELLFDVAESAARRGAAGRAAGAVARVRALARDSERNRRCFVSVGTGRVLAAAFESLAAAGEAGVLEDVLAALVCMMPLDEEAARVLASSSSMGSLVAIAKHGSLAGRLNAVLAIKEAVSRDGAFVDLADDKVDKVVDALVVIIKAPICPQATKAAMVATYHLASSDERVAARVASTGLVPTLIEALVDAEKSVSEKALAVFDAMLASEEGRASARGHALAMPALVKKMFRVSDVATELAVSAMWRLGCKASSGDEEAAATGCLVEALRVGAFQKLLLLLQVGCRDATKEKATELLKMLNKHKGLGECVDAVDFRGLNRLS |
||||||||||
| Function | U-box domain-containing protein 21 [UniProtKB/Swiss-Prot:Q5PNY6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0010150 | OsARC_03g0010150.01 | Chr03 | 7678922 | 7680586 | - | NAM | ||
| CDS seq | ATGGCGCTGCTGGCGCGGAGGGCGCGGAAGGCGGTGATGGCGAAGGCGCCGGCGCCGCTGCTGCAGAAGAGGGGTGGCGGCGCGGCGGCGGAGCTGGCGATCCCGGCGCACTTCCGGTGCCCGATCTCGCTGGACCTGATGCGCGACCCGGTGACGGCGCCGACGGGGATCACGTACGACAGGGAGGGGATCGAGGCGTGGCTGGACACCGGGCGCGCGGTGTGCCCCGTCACCCACGCGCCGCTCCGGCACGAGGACCTCGTCCCCAACCACGCCATCCGCCGCGTCATCCAGGACTGGTGCGTCGCCAACCGGTCCCGCGGCGTGGAGCGCATCCCCACGCCCAAGATCCCCGTCACGCCCGTGCAGGCCTCCGAGCTGCTGTTCGACGTCGCCGAGTCGGCGGCGCGGCGCGGCGCGGCGGGGCGCGCCGCCGGGGCGGTCGCCAGGGTCCGGGCGCTCGCGAGGGACAGCGAGCGGAACCGGCGGTGCTTCGTGTCCGTCGGCACGGGGCGCGTGCTGGCCGCGGCGTTCGAGTCTCTCGCCGCCGCCGGGGAGGCGGGCGTTCTCGAGGACGTCCTGGCGGCATTGGTCTGCATGATGCCGTTGGACGAGGAGGCGGCCAGGGTCTTGGCCTCGTCTAGCTCGATGGGTTCACTCGTCGCCATTGCCAAGCACGGGAGCTTGGCCGGAAGGCTGAACGCTGTGCTGGCGATCAAGGAGGCCGTGTCGCGGGACGGAGCGTTCGTGGACCTGGCGGATGACAAGGTCGACAAGGTCGTCGACGCGCTGGTCGTGATCATCAAGGCTCCGATCTGCCCGCAGGCCACCAAGGCTGCCATGGTCGCCACCTACCACCTGGCGAGCTCCGACGAGCGCGTCGCGGCGAGGGTAGCATCCACGGGGCTCGTCCCAACGCTCATCGAGGCCCTCGTAGACGCCGAAAAGAGCGTGTCCGAGAAGGCCCTGGCGGTGTTCGACGCAATGCTCGCCTCGGAGGAAGGCCGCGCGAGCGCGCGGGGCCACGCCCTCGCAATGCCGGCCCTCGTGAAGAAGATGTTCCGCGTGTCCGACGTGGCCACCGAGCTCGCCGTGTCGGCGATGTGGCGGCTCGGCTGCAAGGCCTCCTCCGGCGACGAGGAGGCCGCCGCGACGGGGTGCCTGGTCGAGGCGCTGCGTGTGGGCGCGTTCCAGAAGCTTCTCCTCCTCCTGCAGGTGGGCTGCAGGGACGCGACCAAGGAGAAGGCCACTGAGCTGCTCAAGATGCTCAACAAGCACAAAGGGTTGGGGGAGTGTGTCGACGCTGTGGATTTCAGAGGGCTCAATAGGCTGTCATGA
More
|
|||||||
| Protein seq | MALLARRARKAVMAKAPAPLLQKRGGGAAAELAIPAHFRCPISLDLMRDPVTAPTGITYDREGIEAWLDTGRAVCPVTHAPLRHEDLVPNHAIRRVIQDWCVANRSRGVERIPTPKIPVTPVQASELLFDVAESAARRGAAGRAAGAVARVRALARDSERNRRCFVSVGTGRVLAAAFESLAAAGEAGVLEDVLAALVCMMPLDEEAARVLASSSSMGSLVAIAKHGSLAGRLNAVLAIKEAVSRDGAFVDLADDKVDKVVDALVVIIKAPICPQATKAAMVATYHLASSDERVAARVASTGLVPTLIEALVDAEKSVSEKALAVFDAMLASEEGRASARGHALAMPALVKKMFRVSDVATELAVSAMWRLGCKASSGDEEAAATGCLVEALRVGAFQKLLLLLQVGCRDATKEKATELLKMLNKHKGLGECVDAVDFRGLNRLS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0240600 | RBH | 0.0 | 0.0 | 0.371555 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13740 | RBH | 0.0 | 0.0 | 0.092256 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0240600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0010320 | RBH | 0.0 | 1.576053 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0010150 | RBH | 0.0 | 0.0 | 0.190982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0010230 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0010030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0123200 | RBH | 0.081103 | 5.007778 | 0.0637245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0122400 | RBH | 0.093473 | 11.556318 | 1.21066 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0010060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0010150 | RBH | 0.0 | 1.459962 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0010040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0010110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G010080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009950 | RBH | 0.0 | 0.0 | 0.0 |
