Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_04G0261900 | OGI:04053280 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr04:17864952-17866037 | ||||||||
| Gene Symbol | OsUPS, UPS, OsPUB41, PUB41 | ||||||||||
| DNA seq | ATGGGGAGAGGCGGCGTGGAGCGCATCCCCACGCCCGTCCAGGCCTCCGACTCCGAGGTGCTGTTCGACGTCGCCGAGTCGGCGCGGCGGAGCGCGCCGCCGGGGCGGTCGCCAGGGTCCGGGCGCTCGCGAGGGACAGCGAGCGGAACGGGGCGCGTGCTGGCCGCGGTGTTCGAGTCTCTCGCCGCCGCCGGAAAGGCGGGCGTTCTCGAGGACGTCCTGGCGGCATTGGTCTGCATGATGCCGTTGGACGAGGCGGCGGCCAGGGTCTTGGCCTCGTCTAGCTCGATGGGTTCTCTTATCACAATTGCCAAGCACGGGAGCTTGCCCGGAAGGCTGAACGCTGTACTGGCAATCAAGGAGGCCGTGTCGCGGGACGGAGCGTTCGTGGACCTGGCGGATGACAAGATCGTCGACGCGCTGCTCGTGATCATCAAGGCTCTGATCCGCCTGCAGGCCGCCATGGTCGCCACCTACCACCTGGCAAGCTCCGACGAGCGCGTCGCGGCGAGGGTAGCATACTAGCATCCACGGGGCTCGTCCCAACACTCATCGAGGCCCTCGTAGACGACGACAAGAGCGTGTCCGAGAAGGCCCTCGTGGTGCTCGACGCAATGCACGCCTCGGAGAAAGGCCGCGCGAGCGCGCGGGGCCACGCCCTTGCAATGCCGGTCCTCGTGAAGAAGATGTTCCGCGTGTCCGACGTGGCCACCAAGCTCTGCCGCCGCCACCGCTCGCTGGGCTCGGTCAAGGGAGGGGCCGGTGAGACCGCTCGGACGGTGAGAAGAAAGCCGACGGTGGGTACTGGCCGGTAAGGAGGACAGACGACGACAGCCGGCGGGAGAGAAGCTAGATCGCCCATGCCGTCTCCCAATCCACCCCGACCGGTGCGTGGAGCGGCGACGACCAGCGGCGATGTGGAGGAGGGCGTCGGCGTCAGTGGCGGCGGCAGAGGAGGGATGGGGATCCGGCCAAGGTCGTCGACACCCTAGATCTGAGGGCGCTGCACCACCTAGGTGTGGATGCTGGTGCTCCTGTTCTTCTTCACCGGCAAGGGCGCCATGGCGCAGCTCAACATCGAGACCG
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| CDS seq | ATGGGGAGAGGCGGCGTGGAGCGCATCCCCACGCCCGTCCAGGCCTCCGACTCCGAGGTGCTGTTCGACGTCGCCGAGTCGGCGCGGCGGAGCGCGCCGCCGGGGCGGTCGCCAGGGTCCGGGCGCTCGCGAGGGACAGCGAGCGGAACGGGGCGCGTGCTGGCCGCGGTGTTCGAGTCTCTCGCCGCCGCCGGAAAGGCGGGCGTTCTCGAGGACGTCCTGGCGGCATTGGTCTGCATGATGCCGTTGGACGAGGCGGCGGCCAGGGTCTTGGCCTCGTCTAGCTCGATGGGTTCTCTTATCACAATTGCCAAGCACGGGAGCTTGCCCGGAAGGCTGAACGCTGTACTGGCAATCAAGGAGGCCGTGTCGCGGGACGGAGCGTTCGTGGACCTGGCGGATGACAAGATCGTCGACGCGCTGCTCGTGATCATCAAGGCTCTGATCCGCCTGCAGGCCGCCATGGTCGCCACCTACCACCTGGCAAGCTCCGACGAGCGCGTCGCGGCGAGGGCCCTCGTAGACGACGACAAGAGCGTGTCCGAGAAGGCCCTCGTGGTGCTCGACGCAATGCACGCCTCGGAGAAAGGCCGCGCGAGCGCGCGGGGCCACGCCCTTGCAATGCCGGTCCTCGTGAAGAAGATGTTCCGCGTGTCCGACGTGGCCACCAAGCTCTGCCGCCGCCACCGCTCGCTGGGCTCGGTCAAGGGAGGGGCCGGTGAGACCGCTCGGACGGTGAGAAGAAAGCCGACGGTGGGTACTGGCCGGTAA
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| Protein seq | MGRGGVERIPTPVQASDSEVLFDVAESARRSAPPGRSPGSGRSRGTASGTGRVLAAVFESLAAAGKAGVLEDVLAALVCMMPLDEAAARVLASSSSMGSLITIAKHGSLPGRLNAVLAIKEAVSRDGAFVDLADDKIVDALLVIIKALIRLQAAMVATYHLASSDERVAARALVDDDKSVSEKALVVLDAMHASEKGRASARGHALAMPVLVKKMFRVSDVATKLCRRHRSLGSVKGGAGETARTVRRKPTVGTGR |
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| Function | U-box domain-containing protein 20 [UniProtKB/Swiss-Prot:Q9C8D1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_04G0261900 | OsZS97_04T0261900.1 | Chr04 | 17864952 | 17866037 | + | makerRMon | ||
| CDS seq | ATGGGGAGAGGCGGCGTGGAGCGCATCCCCACGCCCGTCCAGGCCTCCGACTCCGAGGTGCTGTTCGACGTCGCCGAGTCGGCGCGGCGGAGCGCGCCGCCGGGGCGGTCGCCAGGGTCCGGGCGCTCGCGAGGGACAGCGAGCGGAACGGGGCGCGTGCTGGCCGCGGTGTTCGAGTCTCTCGCCGCCGCCGGAAAGGCGGGCGTTCTCGAGGACGTCCTGGCGGCATTGGTCTGCATGATGCCGTTGGACGAGGCGGCGGCCAGGGTCTTGGCCTCGTCTAGCTCGATGGGTTCTCTTATCACAATTGCCAAGCACGGGAGCTTGCCCGGAAGGCTGAACGCTGTACTGGCAATCAAGGAGGCCGTGTCGCGGGACGGAGCGTTCGTGGACCTGGCGGATGACAAGATCGTCGACGCGCTGCTCGTGATCATCAAGGCTCTGATCCGCCTGCAGGCCGCCATGGTCGCCACCTACCACCTGGCAAGCTCCGACGAGCGCGTCGCGGCGAGGGCCCTCGTAGACGACGACAAGAGCGTGTCCGAGAAGGCCCTCGTGGTGCTCGACGCAATGCACGCCTCGGAGAAAGGCCGCGCGAGCGCGCGGGGCCACGCCCTTGCAATGCCGGTCCTCGTGAAGAAGATGTTCCGCGTGTCCGACGTGGCCACCAAGCTCTGCCGCCGCCACCGCTCGCTGGGCTCGGTCAAGGGAGGGGCCGGTGAGACCGCTCGGACGGTGAGAAGAAAGCCGACGGTGGGTACTGGCCGGTAA
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| Protein seq | MGRGGVERIPTPVQASDSEVLFDVAESARRSAPPGRSPGSGRSRGTASGTGRVLAAVFESLAAAGKAGVLEDVLAALVCMMPLDEAAARVLASSSSMGSLITIAKHGSLPGRLNAVLAIKEAVSRDGAFVDLADDKIVDALLVIIKALIRLQAAMVATYHLASSDERVAARALVDDDKSVSEKALVVLDAMHASEKGRASARGHALAMPVLVKKMFRVSDVATKLCRRHRSLGSVKGGAGETARTVRRKPTVGTGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.094034 | 0.0468745 | 0.6234485 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009190 | SBH | 0.132433 | 0.914650 | 1.051995 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009560 | SBH | 2.371711 | 2.407174 | 5.896281 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008670 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009400 | SBH | 0.000000 | 0.000000 | 0.121933 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
