Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0009560 | OGI:04053280 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:17565947-17569893 | ||||||||
| Gene Symbol | OsUPS, UPS, OsPUB41, PUB41, - | ||||||||||
| DNA seq | atgccgttggacgaggcggcggccagggtcttggcctcgtctagctcgatgggttctcttatcacaattgccaagcacgggagcttgcccggaaggctgaacgctgtactggcaatcaaggaggccgtgtcgcgggacggagcgttcgtggacctggcggatgacaagatcgtcgacgcgctgctcgtgatcatcaaggctctgatccgcctgcaggccgccatggtcgccacctaccacctggcaagctccgacgagcgcgtcgcggcgagggtagcatactagcatccacggggctcgtcccaacactcatcgaggccctcgtagacgacgacaagagcgtgtccgagaaggccctcgtggtgctcgacgcaatgcacgcctcggagaaaggccgcgcgagcgcgcggggccacgcccttgcaatgccggtcctcgtgaagaagatgttccgcgtgtccgacgtggccaccaagctctgccgccgccaccgctcgctgggctcggtcaagggaggggccggtgagaccgctcggacggtgagaagaaagccgacggtgggtactggccggtaaggaggacagacgacgacagccggcgggagagaagctagatcgcccatgccgtctcccaatccaccccgaccggtgcgtggagcggcgacgaccagcggcgatgtggaggagggcgtcggcgtcagtggcggcggcAGaggagggatggggatccggccaaggtcgtcgacaccctagatctgagggcgctgcaccacctaggtgtggatgctggtgctcctgttcttcttcaccggcaagggcgccatggcgcagctcaacatcgagaccggcgtccccatcagttaaatcgagccactcatcctcttcaatgtgcccaccgccttcgccacgccagtcgccagctccaccgagcgacgagagcgagcgagaggccatggccgccgccgtcgccaccgcggccgcagagctcaccgtgtccaagtcatcggccctcggccctcctctccgccgcgctactacctcgccagccgccgcccgcgccggccttccccttcgccgcgccgcccgcgccaccgtgcgtcgccacctcaccccgacgacaacgcacggccacgacaatggcgcgtctccccatctgtcgccggctgcgtcgagaagagagaagagaagaaataaaagaaaagagaaaaAATaGaagaaataagacgaggatgatgacgtggcgtcctgacacgtggggctggatcccacgctgactcagccgccacgtcggacaaaaccggtgtcaaaaccagctagagacctaaagcgaacggttctgtaagttgaagaatgttatatatctggtattgcggttggggatgattttgtaactcgacgacaagttgagggatcttcggtGTActttttccaaaggaaagcaccaacacatataggccgctattgtccatgtggcccatgaggtcctctcgaacccagccgtcgaacgagcttgtgcgccttggcttctaacgccgccggctggccggccggcggcggcggcggcggcggaggagaagccctggcggttgacgacggcgccgcgcagatccacgtcggtcatgtcgcagacaaccgcacccatgtccctcctccgtctctcctccatcctcgccagcaccgccaccgccgccgcctcctccacggcggcgtcgaccaccaccgcggcgacggcatcgccggcacgcccatcccCTcccgcccacgccgcgttccgggagcgcctgcggtcgggaacgctcggtcccgacgacgcgcgccacctgttcgacgaattgctgcttcgccgcgacgcccccgcccccgcgcgaggcctcaacgagctcctctccgcgctcgcccgcgcgccgccctccgccgcctgcagggacgtcccagccctcgccgtcgagctgttcaaacggatggaccgatgcgcctgccccgaggccgctcccaccatctacacctacaacatcctcatcaactgctaccgccgcgcgcgccgccccgacctagggctccccgtcttcggccgcttgctcaggacgggcctggggccggatgtgttctcgtacaacgcgctgatcgacggattctctaaggaaggcgaggtggacaaagctcacgacctgttctacaagatggaagaacagggcatcatgccaaatgtggtgacttacagctcgctaatcaatgggctgtgcaagacgaaagaaatggacaaggctgagagggttctacgacagatggtcggcgctggtattcggcctaataatatgacttacaactgcttgatccatggatactccacttcaggaatgtggaaggagtttgtcagagtgttcaaagagatgtcaagctcccgtctcgtaccggatgtcagcaattgtaactccttcatgactgctctttgcaagcatggcagaatcaaagAAGCaagagatatttttgattcgatggttctgaagggccccaaacctgatgttatctcctatggtgctctgcttcatggctatgctactgcgggatgcatagctggaatggataatctctttaatgtgaTggtatgtgaaggcgtcgtacctgaccgtcatgttttcaacacactgattaatgcatatgctagattggggatgatggataagtccctgcttatatttgaagatatgaagaagcaaggcgtgaaccctgatataatcacattttcaactgtgatatccgctttttgcagactggataggttggatgatgctatggaaaaattcaaacacatgattgatattggtgtaccactggacacagctgtttacggttgtctgattcagggtcaatgtaatcgtggtgatttggtgaaagccaaggaattgatttctgatatgttgagcaagggcattcctcctccttgcatcaagttcttcacctcgattataaacaacctatgtaaggaaggaagggtagcggaagggaaagatatcgtggacttgattatacataccggtcagaggcctaatcttatcacgttcaattcactggtagatggatattgcttagttggcaatatgaaggaagctgttggattacttgattctatggagtcagttggtgttgaacctgacatttatacatataacacacttgttgatggttattgtaaacatggaaggattgacgacgcgttgactctattcagagatatgttgcacaagagagtgacacttacaagtgtttcatacaacatcattctccatgggttatttcaagctaggaggacagttgttgcaaaggaaatgttccatgagatgattgaaagtggaatggctgtgagcattcacacatatgctactgttcttggaggactttgtagaaataactgcaccgatgaagctaacatgctgttggagaaattgttttctatgaatgttaagtttgatatccttactttcaatattgtgattagagcaatgttcaaagttggcagaatgcaagaagctaaggaattgtttgctgctatctctacctatgggttggtgcctactatacttacctatagggtgatgataacaaatcttataaaagaggaatcattcgaagatgctgacaatctcttttcatcaatggagaagagtggctgtactcctgactcttgcatattaaatgagatcattagaatgttactcaataaaggtgagattgccaaggctggacattatttgtctaaaattgataagaagggtatcttgcctgaagctacaaccacttccttgttaatttatctattttcagtgaatgggaaatatcgagaatacataaaattgctccctgaaaagtatcgttttctaagggagcaaactgcagttgataattgtatctgaatttaaatcttcagaaggtaaacttgaattgtctttt
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| CDS seq | atgccgttggacgaggcggcggccagggtcttggcctcgtctagctcgatgggttctcttatcacaattgccaagcacgggagcttgcccggaaggctgaacgctgtactggcaatcaaggaggccgtgtcgcgggacggagcgttcgtggacctggcggatgacaagatcgtcgacgcgctgctcgtgatcatcaaggctctgatccgcctgcaggccgccatggtcgccacctaccacctggcaagctccgacgagcgcgtcgcggcgagggccctcgtagacgacgacaagagcgtgtccgagaaggccctcgtggtgctcgacgcaatgcacgcctcggagaaaggccgcgcgagcgcgcggggccacgcccttgcaatgccggtcctcgtgaagaagatgttccgcgtgtccgacgtggccaccaagctctgccgccgccaccgctcgctgggctcggtcaagggaggggccggtgagaccgctcggacggtgagaagaaagccgacggtgggtactggccgatccacgtcggtcatgtcgcagacaaccgcacccatgtccctcctccgtctctcctccatcctcgccagcaccgccaccgccgccgcctcctccacggcggcgtcgaccaccaccgcggcgacggcatcgccggcacgcccatcccCTcccgcccacgccgcgttccgggagcgcctgcggtcgggaacgctcggtcccgacgacgcgcgccacctgttcgacgaattgctgcttcgccgcgacgcccccgcccccgcgcgaggcctcaacgagctcctctccgcgctcgcccgcgcgccgccctccgccgcctgcagggacgtcccagccctcgccgtcgagctgttcaaacggatggaccgatgcgcctgccccgaggccgctcccaccatctacacctacaacatcctcatcaactgctaccgccgcgcgcgccgccccgacctagggctccccgtcttcggccgcttgctcaggacgggcctggggccggatgtgttctcgtacaacgcgctgatcgacggattctctaaggaaggcgaggtggacaaagctcacgacctgttctacaagatggaagaacagggcatcatgccaaatgtggtgacttacagctcgctaatcaatgggctgtgcaagacgaaagaaatggacaaggctgagagggttctacgacagatggtcggcgctggtattcggcctaataatatgacttacaactgcttgatccatggatactccacttcaggaatgtggaaggagtttgtcagagtgttcaaagagatgtcaagctcccgtctcgtaccggatgtcagcaattgtaactccttcatgactgctctttgcaagcatggcagaatcaaagAAGCaagagatatttttgattcgatggttctgaagggccccaaacctgatgttatctcctatggtgctctgcttcatggctatgctactgcgggatgcatagctggaatggataatctctttaatgtgaTggtatgtgaaggcgtcgtacctgaccgtcatgttttcaacacactgattaatgcatatgctagattggggatgatggataagtccctgcttatatttgaagatatgaagaagcaaggcgtgaaccctgatataatcacattttcaactgtgatatccgctttttgcagactggataggttggatgatgctatggaaaaattcaaacacatgattgatattggtgtaccactggacacagctgtttacggttgtctgattcagggtcaatgtaatcgtggtgatttggtgaaagccaaggaattgatttctgatatgttgagcaagggcattcctcctccttgcatcaagttcttcacctcgattataaacaacctatgtaaggaaggaagggtagcggaagggaaagatatcgtggacttgattatacataccggtcagaggcctaatcttatcacgttcaattcactggtagatggatattgcttagttggcaatatgaaggaagctgttggattacttgattctatggagtcagttggtgttgaacctgacatttatacatataacacacttgttgatggttattgtaaacatggaaggattgacgacgcgttgactctattcagagatatgttgcacaagagagtgacacttacaagtgtttcatacaacatcattctccatgggttatttcaagctaggaggacagttgttgcaaaggaaatgttccatgagatgattgaaagtggaatggctgtgagcattcacacatatgctactgttcttggaggactttgtagaaataactgcaccgatgaagctaacatgctgttggagaaattgttttctatgaatgttaagtttgatatccttactttcaatattgtgattagagcaatgttcaaagttggcagaatgcaagaagctaaggaattgtttgctgctatctctacctatgggttggtgcctactatacttacctatagggtgatgataacaaatcttataaaagaggaatcattcgaagatgctgacaatctcttttcatcaatggagaagagtggctgtactcctgactcttgcatattaaatgagatcattagaatgttactcaataaaggtgagattgccaaggctggacattatttgtctaaaattgataagaagggtatcttgcctgaagctacaaccacttccttgttaatttatctattttcagtgaatgggaaatatcgagaatacataaaattgctccctgaaaagtatcgttttctaagggagcaaactgcagttgataattgtatctga
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| Protein seq | MPLDEAAARVLASSSSMGSLITIAKHGSLPGRLNAVLAIKEAVSRDGAFVDLADDKIVDALLVIIKALIRLQAAMVATYHLASSDERVAARALVDDDKSVSEKALVVLDAMHASEKGRASARGHALAMPVLVKKMFRVSDVATKLCRRHRSLGSVKGGAGETARTVRRKPTVGTGRSTSVMSQTTAPMSLLRLSSILASTATAAASSTAASTTTAATASPARPSPPAHAAFRERLRSGTLGPDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGIRPNNMTYNCLIHGYSTSGMWKEFVRVFKEMSSSRLVPDVSNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLIFEDMKKQGVNPDIITFSTVISAFCRLDRLDDAMEKFKHMIDIGVPLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCTPDSCILNEIIRMLLNKGEIAKAGHYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLPEKYRFLREQTAVDNCI |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0009560 | OsPr106_04g0009560.01 | Chr04 | 17565947 | 17569893 | + | NAM | ||
| CDS seq | atgccgttggacgaggcggcggccagggtcttggcctcgtctagctcgatgggttctcttatcacaattgccaagcacgggagcttgcccggaaggctgaacgctgtactggcaatcaaggaggccgtgtcgcgggacggagcgttcgtggacctggcggatgacaagatcgtcgacgcgctgctcgtgatcatcaaggctctgatccgcctgcaggccgccatggtcgccacctaccacctggcaagctccgacgagcgcgtcgcggcgagggccctcgtagacgacgacaagagcgtgtccgagaaggccctcgtggtgctcgacgcaatgcacgcctcggagaaaggccgcgcgagcgcgcggggccacgcccttgcaatgccggtcctcgtgaagaagatgttccgcgtgtccgacgtggccaccaagctctgccgccgccaccgctcgctgggctcggtcaagggaggggccggtgagaccgctcggacggtgagaagaaagccgacggtgggtactggccgatccacgtcggtcatgtcgcagacaaccgcacccatgtccctcctccgtctctcctccatcctcgccagcaccgccaccgccgccgcctcctccacggcggcgtcgaccaccaccgcggcgacggcatcgccggcacgcccatcccCTcccgcccacgccgcgttccgggagcgcctgcggtcgggaacgctcggtcccgacgacgcgcgccacctgttcgacgaattgctgcttcgccgcgacgcccccgcccccgcgcgaggcctcaacgagctcctctccgcgctcgcccgcgcgccgccctccgccgcctgcagggacgtcccagccctcgccgtcgagctgttcaaacggatggaccgatgcgcctgccccgaggccgctcccaccatctacacctacaacatcctcatcaactgctaccgccgcgcgcgccgccccgacctagggctccccgtcttcggccgcttgctcaggacgggcctggggccggatgtgttctcgtacaacgcgctgatcgacggattctctaaggaaggcgaggtggacaaagctcacgacctgttctacaagatggaagaacagggcatcatgccaaatgtggtgacttacagctcgctaatcaatgggctgtgcaagacgaaagaaatggacaaggctgagagggttctacgacagatggtcggcgctggtattcggcctaataatatgacttacaactgcttgatccatggatactccacttcaggaatgtggaaggagtttgtcagagtgttcaaagagatgtcaagctcccgtctcgtaccggatgtcagcaattgtaactccttcatgactgctctttgcaagcatggcagaatcaaagAAGCaagagatatttttgattcgatggttctgaagggccccaaacctgatgttatctcctatggtgctctgcttcatggctatgctactgcgggatgcatagctggaatggataatctctttaatgtgaTggtatgtgaaggcgtcgtacctgaccgtcatgttttcaacacactgattaatgcatatgctagattggggatgatggataagtccctgcttatatttgaagatatgaagaagcaaggcgtgaaccctgatataatcacattttcaactgtgatatccgctttttgcagactggataggttggatgatgctatggaaaaattcaaacacatgattgatattggtgtaccactggacacagctgtttacggttgtctgattcagggtcaatgtaatcgtggtgatttggtgaaagccaaggaattgatttctgatatgttgagcaagggcattcctcctccttgcatcaagttcttcacctcgattataaacaacctatgtaaggaaggaagggtagcggaagggaaagatatcgtggacttgattatacataccggtcagaggcctaatcttatcacgttcaattcactggtagatggatattgcttagttggcaatatgaaggaagctgttggattacttgattctatggagtcagttggtgttgaacctgacatttatacatataacacacttgttgatggttattgtaaacatggaaggattgacgacgcgttgactctattcagagatatgttgcacaagagagtgacacttacaagtgtttcatacaacatcattctccatgggttatttcaagctaggaggacagttgttgcaaaggaaatgttccatgagatgattgaaagtggaatggctgtgagcattcacacatatgctactgttcttggaggactttgtagaaataactgcaccgatgaagctaacatgctgttggagaaattgttttctatgaatgttaagtttgatatccttactttcaatattgtgattagagcaatgttcaaagttggcagaatgcaagaagctaaggaattgtttgctgctatctctacctatgggttggtgcctactatacttacctatagggtgatgataacaaatcttataaaagaggaatcattcgaagatgctgacaatctcttttcatcaatggagaagagtggctgtactcctgactcttgcatattaaatgagatcattagaatgttactcaataaaggtgagattgccaaggctggacattatttgtctaaaattgataagaagggtatcttgcctgaagctacaaccacttccttgttaatttatctattttcagtgaatgggaaatatcgagaatacataaaattgctccctgaaaagtatcgttttctaagggagcaaactgcagttgataattgtatctga
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| Protein seq | MPLDEAAARVLASSSSMGSLITIAKHGSLPGRLNAVLAIKEAVSRDGAFVDLADDKIVDALLVIIKALIRLQAAMVATYHLASSDERVAARALVDDDKSVSEKALVVLDAMHASEKGRASARGHALAMPVLVKKMFRVSDVATKLCRRHRSLGSVKGGAGETARTVRRKPTVGTGRSTSVMSQTTAPMSLLRLSSILASTATAAASSTAASTTTAATASPARPSPPAHAAFRERLRSGTLGPDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGIRPNNMTYNCLIHGYSTSGMWKEFVRVFKEMSSSRLVPDVSNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLIFEDMKKQGVNPDIITFSTVISAFCRLDRLDDAMEKFKHMIDIGVPLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCTPDSCILNEIIRMLLNKGEIAKAGHYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLPEKYRFLREQTAVDNCI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.371711 | 2.407174 | 5.896281 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0350000 | RBH | 0.826316 | 1.227461 | 2.365032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28234 | RBH | 0.566649 | 0.883541 | 0.543782 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0350000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009190 | RBH | 0.132433 | 0.914650 | 1.051995 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009980 | RBH | 0.180190 | 0.000000 | 0.996844 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009770 | RBH | 0.117572 | 1.838368 | 2.855842 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009430 | RBH | 0.135127 | 0.074211 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009540 | SBH | 3.473200 | 0.0 | 1.371481 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0265400 | RBH | 1.804917 | 4.9786805 | 1.9273225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008670 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0261700 | SBH | 1.6999725 | 2.0942575 | 4.626599 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009220 | RBH | 0.183568 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008850 | RBH | 0.387762 | 2.422533 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008900 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009400 | RBH | 0.000000 | 0.000000 | 0.121933 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009560 | RBH | 0.155197 | 0.730214 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008730 | RBH | 0.384366 | 0.861570 | 0.457926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008760 | SBH | 0.604033 | 2.569614 | 0.338576 |
