Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0009540 | OGI:04053240 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:17547975-17550644 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caacccgaacggcgcgcactcccgtgccacacgcccacaacgcacgccctcctcgagacctcgtcggcggtcggcctccggcgacaggagtgggagccgagcggcagccgcgccacccgccgccgccggctgagcagcagcctcgctgtggtggagaagggagggagaccggcgaaggaggaaccgtcaaggcggtcgacggcggcgccggcgcagaaccacgtcggcgaggtcgccctcctctcggcttagagaaaccgagcgccgatgtgctcggcctcgccccctcgccgtcggcccacaccagtgtcatcgtcatcgccttcatccggacgagaccaccgcagccatgtcctcccgcccccgcctctcctccatcttcgccgcttccaccgcggcgtcgaccaccaccaccgtcgcggcatcgccatcgcgcccgctccctcctgcgtacgccgcgttccaggagcgcctgaggtcgggaacgctcgggcccgacgacgcacgccaactgttcgacgaattgctactgcgccgcgacgaccctgcccctgcccccgcccccgcgcgcgccatcagcgacatcctcgctgcgctcgcccgcgcgccgccttccgccgcctgcagtgatggccccgccctggccgtcgagctgttcaaacggatggaccgatgggcatgcccccatgcggccgctgatgctctcaccatctacacctacaacatcctcatcgactgctaccgccgaatgcaccgtccagagctagcgcttgctgtcttcggccgcttgctcaggacgggcctgggtccggatgtgtgttcgtacaacacgctcatcgacggtttctctaaggagggcgaggtggacaaagcttacgagttgttctataagatgatagaacagtccgtttcgcctgatgtggtcacttataactcactcatcgatgggctctgcaagacaaaggaaatggtgaagtctgagcgtgttctggagcagatggttgatgccggtattcgacctaataacaagacatacaatagcctgatatatggatattccactgcgggaatgtggaaggagtcggttagagtgttcaaagaaatgtcaagctccggtctcataccatgtgttgttaattgcaactccttcattcatgctctctgcaggcacaatagaatcaaagaagcaaaagatatttttgattcaatggttctgaagggccccaaacctaacattatctcctactctaccctgcttcatgggtatgctgctgaaggttgctttgccaacatgaatagcctcgttaatttgatggtatctaaaggtattgtacctaaccaccgttttttcaacatactgattaatgcatatgctcgttgtgggatgatggataaggctatgcttatatttgaagacatgcagaacaaaggaatgatccctgacactgtcacatttgcaaccgtgatatcttctctttgcagaattggcaggttggatgatgctctgcacaaattcaaccacatggttgatattggtgtaccaccgagtgaggctgtttaccgctgtctgatccagggttgttgtaatcatggtgagttggtaaaagccaaggaattgatttctgaaatgatgaacaaggatattcctcctcctggtgtcaagtatttcagttcaataataaacaacctgtgcaaagagggaagggtagcagaagggaaagatatcatggacatgatggtacaaacggggcaaaggcctaatgttgttacttttaattcattgatggagggatattgcttagttggtaatatggaggaggcatttgcattacttgatgctatggcatcaattggcattgaactgaattgttacatatatggtacgcttgttgatggctattgtaaaaatggaaggattgatgatgcattgactgtattcagagacatgttgcacaagggagtcaagcctacaagtgttttatataacatcattctccatgggttatttcaggccaggaggacaactgctgcaaagaaaatgttccatgagatgattgaaagtggaacgaccgtgagcattcagacatacggtgttgtgcttggtggactttgtagaaacaattgcaccgatgaagcaaatatgctgttggagaaattatttgctatgaatgtaaaatttgatatcattactttcaatattgtgattagtgcaatgctcaaagttggcagaaggcaagaggctaaggaattgtttgctgctatctcaacttatgggttggtgcctaccgtacatacctacaacttgatgatatcaaatcttataaaagaagagtcatacgaagaggctgacaatctcTttatatcagtggagaagagtggccgtgctcctgactctcgtcttcttaatcatatcgtcaggatgttactcaagaaagctgaggttgccaaagctagtaattatctgtctataattgacgagaataacctcactcttgaagcttcaactatttctttactggcttctctcttctcaagggaaggtaaatgtcgggagcatataaaattgctccctgcaaagtatcagtttctttagttagcttggcacttgtaatacattgttgtatctgaaattacattaaacatatggcactcttgagtttattgtgctcc
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| CDS seq | atgtcctcccgcccccgcctctcctccatcttcgccgcttccaccgcggcgtcgaccaccaccaccgtcgcggcatcgccatcgcgcccgctccctcctgcgtacgccgcgttccaggagcgcctgaggtcgggaacgctcgggcccgacgacgcacgccaactgttcgacgaattgctactgcgccgcgacgaccctgcccctgcccccgcccccgcgcgcgccatcagcgacatcctcgctgcgctcgcccgcgcgccgccttccgccgcctgcagtgatggccccgccctggccgtcgagctgttcaaacggatggaccgatgggcatgcccccatgcggccgctgatgctctcaccatctacacctacaacatcctcatcgactgctaccgccgaatgcaccgtccagagctagcgcttgctgtcttcggccgcttgctcaggacgggcctgggtccggatgtgtgttcgtacaacacgctcatcgacggtttctctaaggagggcgaggtggacaaagcttacgagttgttctataagatgatagaacagtccgtttcgcctgatgtggtcacttataactcactcatcgatgggctctgcaagacaaaggaaatggtgaagtctgagcgtgttctggagcagatggttgatgccggtattcgacctaataacaagacatacaatagcctgatatatggatattccactgcgggaatgtggaaggagtcggttagagtgttcaaagaaatgtcaagctccggtctcataccatgtgttgttaattgcaactccttcattcatgctctctgcaggcacaatagaatcaaagaagcaaaagatatttttgattcaatggttctgaagggccccaaacctaacattatctcctactctaccctgcttcatgggtatgctgctgaaggttgctttgccaacatgaatagcctcgttaatttgatggtatctaaaggtattgtacctaaccaccgttttttcaacatactgattaatgcatatgctcgttgtgggatgatggataaggctatgcttatatttgaagacatgcagaacaaaggaatgatccctgacactgtcacatttgcaaccgtgatatcttctctttgcagaattggcaggttggatgatgctctgcacaaattcaaccacatggttgatattggtgtaccaccgagtgaggctgtttaccgctgtctgatccagggttgttgtaatcatggtgagttggtaaaagccaaggaattgatttctgaaatgatgaacaaggatattcctcctcctggtgtcaagtatttcagttcaataataaacaacctgtgcaaagagggaagggtagcagaagggaaagatatcatggacatgatggtacaaacggggcaaaggcctaatgttgttacttttaattcattgatggagggatattgcttagttggtaatatggaggaggcatttgcattacttgatgctatggcatcaattggcattgaactgaattgttacatatatggtacgcttgttgatggctattgtaaaaatggaaggattgatgatgcattgactgtattcagagacatgttgcacaagggagtcaagcctacaagtgttttatataacatcattctccatgggttatttcaggccaggaggacaactgctgcaaagaaaatgttccatgagatgattgaaagtggaacgaccgtgagcattcagacatacggtgttgtgcttggtggactttgtagaaacaattgcaccgatgaagcaaatatgctgttggagaaattatttgctatgaatgtaaaatttgatatcattactttcaatattgtgattagtgcaatgctcaaagttggcagaaggcaagaggctaaggaattgtttgctgctatctcaacttatgggttggtgcctaccgtacatacctacaacttgatgatatcaaatcttataaaagaagagtcatacgaagaggctgacaatctcTttatatcagtggagaagagtggccgtgctcctgactctcgtcttcttaatcatatcgtcaggatgttactcaagaaagctgaggttgccaaagctagtaattatctgtctataattgacgagaataacctcactcttgaagcttcaactatttctttactggcttctctcttctcaagggaaggtaaatgtcgggagcatataaaattgctccctgcaaagtatcagtttctttag
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| Protein seq | MSSRPRLSSIFAASTAASTTTTVAASPSRPLPPAYAAFQERLRSGTLGPDDARQLFDELLLRRDDPAPAPAPARAISDILAALARAPPSAACSDGPALAVELFKRMDRWACPHAAADALTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIELNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREGKCREHIKLLPAKYQFL |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0009540 | OsPr106_04g0009540.01 | Chr04 | 17547975 | 17550644 | + | NAM | ||
| CDS seq | atgtcctcccgcccccgcctctcctccatcttcgccgcttccaccgcggcgtcgaccaccaccaccgtcgcggcatcgccatcgcgcccgctccctcctgcgtacgccgcgttccaggagcgcctgaggtcgggaacgctcgggcccgacgacgcacgccaactgttcgacgaattgctactgcgccgcgacgaccctgcccctgcccccgcccccgcgcgcgccatcagcgacatcctcgctgcgctcgcccgcgcgccgccttccgccgcctgcagtgatggccccgccctggccgtcgagctgttcaaacggatggaccgatgggcatgcccccatgcggccgctgatgctctcaccatctacacctacaacatcctcatcgactgctaccgccgaatgcaccgtccagagctagcgcttgctgtcttcggccgcttgctcaggacgggcctgggtccggatgtgtgttcgtacaacacgctcatcgacggtttctctaaggagggcgaggtggacaaagcttacgagttgttctataagatgatagaacagtccgtttcgcctgatgtggtcacttataactcactcatcgatgggctctgcaagacaaaggaaatggtgaagtctgagcgtgttctggagcagatggttgatgccggtattcgacctaataacaagacatacaatagcctgatatatggatattccactgcgggaatgtggaaggagtcggttagagtgttcaaagaaatgtcaagctccggtctcataccatgtgttgttaattgcaactccttcattcatgctctctgcaggcacaatagaatcaaagaagcaaaagatatttttgattcaatggttctgaagggccccaaacctaacattatctcctactctaccctgcttcatgggtatgctgctgaaggttgctttgccaacatgaatagcctcgttaatttgatggtatctaaaggtattgtacctaaccaccgttttttcaacatactgattaatgcatatgctcgttgtgggatgatggataaggctatgcttatatttgaagacatgcagaacaaaggaatgatccctgacactgtcacatttgcaaccgtgatatcttctctttgcagaattggcaggttggatgatgctctgcacaaattcaaccacatggttgatattggtgtaccaccgagtgaggctgtttaccgctgtctgatccagggttgttgtaatcatggtgagttggtaaaagccaaggaattgatttctgaaatgatgaacaaggatattcctcctcctggtgtcaagtatttcagttcaataataaacaacctgtgcaaagagggaagggtagcagaagggaaagatatcatggacatgatggtacaaacggggcaaaggcctaatgttgttacttttaattcattgatggagggatattgcttagttggtaatatggaggaggcatttgcattacttgatgctatggcatcaattggcattgaactgaattgttacatatatggtacgcttgttgatggctattgtaaaaatggaaggattgatgatgcattgactgtattcagagacatgttgcacaagggagtcaagcctacaagtgttttatataacatcattctccatgggttatttcaggccaggaggacaactgctgcaaagaaaatgttccatgagatgattgaaagtggaacgaccgtgagcattcagacatacggtgttgtgcttggtggactttgtagaaacaattgcaccgatgaagcaaatatgctgttggagaaattatttgctatgaatgtaaaatttgatatcattactttcaatattgtgattagtgcaatgctcaaagttggcagaaggcaagaggctaaggaattgtttgctgctatctcaacttatgggttggtgcctaccgtacatacctacaacttgatgatatcaaatcttataaaagaagagtcatacgaagaggctgacaatctcTttatatcagtggagaagagtggccgtgctcctgactctcgtcttcttaatcatatcgtcaggatgttactcaagaaagctgaggttgccaaagctagtaattatctgtctataattgacgagaataacctcactcttgaagcttcaactatttctttactggcttctctcttctcaagggaaggtaaatgtcgggagcatataaaattgctccctgcaaagtatcagtttctttag
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| Protein seq | MSSRPRLSSIFAASTAASTTTTVAASPSRPLPPAYAAFQERLRSGTLGPDDARQLFDELLLRRDDPAPAPAPARAISDILAALARAPPSAACSDGPALAVELFKRMDRWACPHAAADALTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIELNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREGKCREHIKLLPAKYQFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.473200 | 0.0 | 1.371481 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0349600 | RBH | 1.804112 | 1.796293 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28300 | SBH | 0.142335 | 0.280675 | 0.060394 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0349600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009270 | SBH | 0.068413 | 0.0 | 0.723975 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010030 | SBH | 0.000000 | 0.0 | 0.503419 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009820 | SBH | 0.000000 | 0.0 | 1.610049 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009510 | SBH | 0.042197 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009620 | RBH | 1.548575 | 0.0 | 0.779863 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0265100 | RBH | 1.1930065 | 1.37742 | 0.501284 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008740 | SBH | 0.095652 | 0.118484 | 0.363431 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0261700 | RBH | 1.6999725 | 2.0942575 | 4.626599 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009270 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008900 | SBH | 0.071953 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008960 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009470 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009560 | SBH | 0.155197 | 0.730214 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008780 | SBH | 0.074927 | 0.000000 | 0.503324 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008810 | SBH | 0.262278 | 0.000000 | 1.278491 |
