Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0349600 | OGI:04053240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:16661799-16664487 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAACCCGAACGGCGCGCACTCCCGTGCCACACGCCCACAACGCACGCCCTCCTCGAGACCTCGTCGGCGGTCGGCCTCCGGCGACAGGAGTGGGAGCCGAGCGGCAGCCGCGCCACCCGCCGCCGCCGGCTGAGAAGCAGCCTCGCTGTGGTGGAGAAGGGAGGGAGACCGGCGAAGGAGGAACCGTCAAGGCGGTCGACGGCGGCGCCGGCGCAGAACCACGTCGGCGAGGTCGACCTCCTCTCGGGTTCGAGAAACCGAGCGCCGATGTGCTCGGCCTCGCGGTCGCACCATTCCCCTCGCCGTCGGCCCACACCAGTGTCGTCATCATCGCCTTCTTCCGGACGAGACCACCGCAGCATGTCCTCCCGCCCCCGCCTCTCCTCCATCTTCGCCGCCTCCACCACGGCGTCGACCACCACCACCACCGTCGCGGCATCGCCAGCGCGCCCGCTCCCTCCTGCGTACGCCGCGTTCCAGGAGCGCCTGAGGTCGGGAACGCTCGGGCCCGACGACGCACGCCACCTGTTCGACGAATCCCTACTGCGCCGCGACGACCCTGCCCCTGCCCCCGCCCCCGCGCGCGCCATCAGCGACATCCTCGCCGCGCTCGCCCGAGCGCCGCCTTCCGCCGCCTGCAGTGATGGCCCCGCCCTGGCCGTCGAGCTGTTCAAACGGATGGACCGATGGGCATGCCCCCATGCGGCTGCTGATGCTCCCACCATCTACACCTACAACATCCCTCATCGACGTGCTACCTGCCGAATGCACCGTCCAGAGCTAGCGCTTGCTGTCTTCGGCCGCTTGCTCAGGACGGGCCTGGGTCCGGATGTGTGTTCGTACAACACGCTCATCGACGGTTTCTCTAAGGAGGGCGAGGTGGACAAAGCTTACGAGTTGTTCTATAAGATGATAGAACAGTCCGTTTCGCCTGATGTGGTCACTTATAACTCGCTGATCGATGGGCTCTGCAAGACAAAGGAAATGGTGAAGTCTGAGCGTGTTCTGGAGCAGATGGTTGATGCCGGTATTCGACCTAATAACAAGACATACAATAGCCTGATATATGGATATTCCACTGCGGGAATGTGGAAGGAGTCGGTTAGAGTGTTCAAAGAAATGTCAAGCTCCGGTCTCATACCATGTGTTGTTAATTGCAACTCCTTCATTCATGCTCTCTGCAGGCACAATAGAATCAAAGAAGCAAAAGATATTTTTGATTCAATGGTTCTGAAGGGCCCCAAACCTAACATTATCTCCTACTCTACCCTGCTTCATGGGTATGCTGCTGAAGGTTGCTTTGCCAACATGAATAGCCTCGTTAATTTGATGGTATCTAAAGGTATTGTACCTAACCACCGTTTTTTCAACATACTGATTAATGCATATGCTCGTTGTGGGATGATGGATAAGGCTATGCTTATATTTGAAGACATGCAGAACAAAGGAATGATCCCTGACACTGTCACATTTGCAACCGTGATATCTTCTCTTTGCAGAATTGGCAGGTTGGATGATGCTCTGCACAAATTCAACCACATGGTTGATATTGGTGTACCACCGAGTGAGGCTGTTTACCGCTGTCTGATCCAGGGTTGTTGTAATCATGGTGAGTTGGTAAAAGCCAAGGAATTGATTTCTGAAATGATGAACAAGGATATTCCTCCTCCTGGTGTCAAGTATTTCAGTTCAATAATAAACAACCTGTTCAAAGAGGGAAGGGTAGCAGAAGGGAAAGATATCATGGACTTGATGGTACAAACGGGGCAAAGGCCTAATGTTGTTACTTTTAATTCATTGATGGAGGGATATTGCTTAGTTGGTAATATGGAGGAGGCATTGCATTACTTGATGCTATGGCATCAATTGGCATTGAACCGAATTGTTACATATATGGTACGCTTGTTGATGGCTATTGTAAAAATGGAAGGATTGATGATGCATTGACTGTATTCAGAGACATGTTGCACAAGGGAGTCAAGCCTACAAGTGTTTTATATAACATCATTCTCCATGGGTTATTTCAGGCCAGGAGGACAACTGCTGCAAAGAAAATGTTCCATGAGATGATTGAAAGTGGAACGACCGTGAGCATTCAGACATACGGTGTTGTGCTTGGTGGACTTTGTAGAAACAATTGCACCGATGAAGCAAATATGCTGTTGGAGAAATTATTTGCTATGAATGTAAAATTTGATATCATTACTTTCAATATTGTGATTAGTGCAATGCTCAAAGTTGGCAGAAGGCAAGAGGCTAAGGAATTGTTTGCTGCTATCTCAACTTATGGGTTGGTGCCTACTGTACATACCTACAACTTGATGATATCAAATCTTATAAAAGAAGAGTCATACGAAGAGGCTGACAATCTCTTTATATCAGTGGAGAAGAGTGGCCGTGCTCCTGACTCTCGTCTTCTTAATCATATCGTCAGGATGTTACTCAAGAAAGCTGAGGTTGCCAAAGCTAGTAATTATCTGTCTATAATTGACGAGAATAACCTCACTCTTGAAGCTTCAACTATTTCTTTACTGGCTTCTCTCTTCTCAAGGGAAGGTAAATGTCGGGAGCATATAAAATTGCTCCCTGCAAAGTATCAGTTTCTTTAGTTAGCTTGGCACTGCTAATACATTGTTGTATCTGAAATTACATTAAACATATGGCACTCTTGAGTTTATTGTGCTCCTAC
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| CDS seq | ATGTGCTCGGCCTCGCGGTCGCACCATTCCCCTCGCCGTCGGCCCACACCAGTGTCGTCATCATCGCCTTCTTCCGGACGAGACCACCGCAGCATGTCCTCCCGCCCCCGCCTCTCCTCCATCTTCGCCGCCTCCACCACGGCGTCGACCACCACCACCACCGTCGCGGCATCGCCAGCGCGCCCGCTCCCTCCTGCGTACGCCGCGTTCCAGGAGCGCCTGAGGTCGGGAACGCTCGGGCCCGACGACGCACGCCACCTGTTCGACGAATCCCTACTGCGCCGCGACGACCCTGCCCCTGCCCCCGCCCCCGCGCGCGCCATCAGCGACATCCTCGCCGCGCTCGCCCGAGCGCCGCCTTCCGCCGCCTGCAGTGATGGCCCCGCCCTGGCCGTCGAGCTGTTCAAACGGATGGACCGATGGGCATGCCCCCATGCGGCTGCTGATGCTCCCACCATCTACACCTACAACATCCCTCATCGACGTGCTACCTGCCGAATGCACCGTCCAGAGCTAGCGCTTGCTGTCTTCGGCCGCTTGCTCAGGACGGGCCTGGGTCCGGATGTGTGTTCGTACAACACGCTCATCGACGGTTTCTCTAAGGAGGGCGAGGTGGACAAAGCTTACGAGTTGTTCTATAAGATGATAGAACAGTCCGTTTCGCCTGATGTGGTCACTTATAACTCGCTGATCGATGGGCTCTGCAAGACAAAGGAAATGGTGAAGTCTGAGCGTGTTCTGGAGCAGATGGTTGATGCCGGTATTCGACCTAATAACAAGACATACAATAGCCTGATATATGGATATTCCACTGCGGGAATGTGGAAGGAGTCGGTTAGAGTGTTCAAAGAAATGTCAAGCTCCGGTCTCATACCATGTGTTGTTAATTGCAACTCCTTCATTCATGCTCTCTGCAGGCACAATAGAATCAAAGAAGCAAAAGATATTTTTGATTCAATGGTTCTGAAGGGCCCCAAACCTAACATTATCTCCTACTCTACCCTGCTTCATGGGTATGCTGCTGAAGGTTGCTTTGCCAACATGAATAGCCTCGTTAATTTGATGGTATCTAAAGAATTGGCAGGTTGGATGATGCTCTGCACAAATTCAACCACATGGTTGATATTGGTGTACCACCGAGTGAGGCTGTTTACCGCTGTCTGA
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| Protein seq | MCSASRSHHSPRRRPTPVSSSSPSSGRDHRSMSSRPRLSSIFAASTTASTTTTTVAASPARPLPPAYAAFQERLRSGTLGPDDARHLFDESLLRRDDPAPAPAPARAISDILAALARAPPSAACSDGPALAVELFKRMDRWACPHAAADAPTIYTYNIPHRRATCRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKELAGWMMLCTNSTTWLILVYHRVRLFTAV |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0349600 | OsNip_04t0349600-01 | Chr04 | 16661799 | 16664487 | + | RAP2018-11-26 | ||
| CDS seq | ATGTGCTCGGCCTCGCGGTCGCACCATTCCCCTCGCCGTCGGCCCACACCAGTGTCGTCATCATCGCCTTCTTCCGGACGAGACCACCGCAGCATGTCCTCCCGCCCCCGCCTCTCCTCCATCTTCGCCGCCTCCACCACGGCGTCGACCACCACCACCACCGTCGCGGCATCGCCAGCGCGCCCGCTCCCTCCTGCGTACGCCGCGTTCCAGGAGCGCCTGAGGTCGGGAACGCTCGGGCCCGACGACGCACGCCACCTGTTCGACGAATCCCTACTGCGCCGCGACGACCCTGCCCCTGCCCCCGCCCCCGCGCGCGCCATCAGCGACATCCTCGCCGCGCTCGCCCGAGCGCCGCCTTCCGCCGCCTGCAGTGATGGCCCCGCCCTGGCCGTCGAGCTGTTCAAACGGATGGACCGATGGGCATGCCCCCATGCGGCTGCTGATGCTCCCACCATCTACACCTACAACATCCCTCATCGACGTGCTACCTGCCGAATGCACCGTCCAGAGCTAGCGCTTGCTGTCTTCGGCCGCTTGCTCAGGACGGGCCTGGGTCCGGATGTGTGTTCGTACAACACGCTCATCGACGGTTTCTCTAAGGAGGGCGAGGTGGACAAAGCTTACGAGTTGTTCTATAAGATGATAGAACAGTCCGTTTCGCCTGATGTGGTCACTTATAACTCGCTGATCGATGGGCTCTGCAAGACAAAGGAAATGGTGAAGTCTGAGCGTGTTCTGGAGCAGATGGTTGATGCCGGTATTCGACCTAATAACAAGACATACAATAGCCTGATATATGGATATTCCACTGCGGGAATGTGGAAGGAGTCGGTTAGAGTGTTCAAAGAAATGTCAAGCTCCGGTCTCATACCATGTGTTGTTAATTGCAACTCCTTCATTCATGCTCTCTGCAGGCACAATAGAATCAAAGAAGCAAAAGATATTTTTGATTCAATGGTTCTGAAGGGCCCCAAACCTAACATTATCTCCTACTCTACCCTGCTTCATGGGTATGCTGCTGAAGGTTGCTTTGCCAACATGAATAGCCTCGTTAATTTGATGGTATCTAAAGAATTGGCAGGTTGGATGATGCTCTGCACAAATTCAACCACATGGTTGATATTGGTGTACCACCGAGTGAGGCTGTTTACCGCTGTCTGA
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| Protein seq | MCSASRSHHSPRRRPTPVSSSSPSSGRDHRSMSSRPRLSSIFAASTTASTTTTTVAASPARPLPPAYAAFQERLRSGTLGPDDARHLFDESLLRRDDPAPAPAPARAISDILAALARAPPSAACSDGPALAVELFKRMDRWACPHAAADAPTIYTYNIPHRRATCRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKELAGWMMLCTNSTTWLILVYHRVRLFTAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.804112 | 1.796293 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0350000 | RBH | 0.826316 | 1.227461 | 2.365032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28234 | SBH | 0.566649 | 0.883541 | 0.543782 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0349600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009170 | RBH | 0.129175 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009950 | RBH | 0.376962 | 0.0 | 0.616493 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009740 | RBH | 0.562909 | 1.955666 | 0.987335 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009400 | RBH | 0.207296 | 0.045744 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009540 | RBH | 3.473200 | 0.0 | 1.371481 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0265100 | RBH | 1.1930065 | 1.37742 | 0.501284 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008650 | RBH | 0.073570 | 0.000000 | 0.250776 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0261700 | RBH | 1.6999725 | 2.0942575 | 4.626599 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009190 | RBH | 0.137095 | 0.079411 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008820 | RBH | 0.945277 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008870 | RBH | 5.623301 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009380 | RBH | 0.129305 | 0.000000 | 0.149680 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009530 | RBH | 0.104267 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008700 | RBH | 0.219173 | 0.974827 | 0.056668 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008730 | RBH | 1.335729 | 1.733793 | 1.706826 |
