Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0023340 | OGI:11077650 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:29858487-29863109 | ||||||||
| Gene Symbol | DRP-RP13, OsDRP-RP13, - | ||||||||||
| DNA seq | atggcaacaatagtagacacattggttggatcatgcatcaataagttgcaagcgatcattacagacaagacaatactcattttaggggtaaaagatgagcttgaagaactgcaacgaagaacaaacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagatttagtagttgaaaaatggcttgaccagctaagagatgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactgcctgactatcctatgtcatcgtcaaggaaatcaactgcttgcagtggcctttcactttcatcctgcttttctaatattcgtatacgtcatgaagttgctgtaaaaattagaagcctgaacaaaaagatcgataacatttcaaaggatgaggtatttttaaaactcaaccgcagacatcataatggaagtggttcagcatggacaccaatagaaagctccagcctagttgaacccaaccttgtgggcaaggaggtcatacgtgcttgcagagaagtggtggatttggtgcttgcacacaagaaaaagaatgtttacaagcttgctattgttggaacaggaggagttggtaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcatgcatgggcttgtgtttccaaggagtattctagggattctcttttgagacaagttcttcgtaatatgggaattcgatatgagcaagatgaatcagttccagagctccaaagaaagattaaatcacacattttaaataaaagtttttttctggtgttggatgatgtgtggaactctgaagcatggacagatttactaagcactccacttcatgcagccgccacaggagtaattctaataactactcgagatgacactattgctagagtaattggggtggactacactcatagggttgatttgatgtcagctgatgtaggatgggagctgctttggaggagcatgaacatcaaccaagagaaacaagtgcaaaatctcaaggacataggtattgagattgttcgcaaatgtggtggccttcctcttgcaatcagagttattgctacagttttagcaagccaagaacaaacagagaatgaatggagacggatattggggaaaaatgcctggtccatgagcaaacttcctcgtgaattaagtggtgctttatatctgagttatgaagtgctgccgcaccaactgaagcaatgttttctttattgtgcacttttccctgaagatgaaaccattttgcgtgacgatcttactaggatgtgggttgctgaaggctttatagatgaggaaaaaggacaattactagaagatacagcagagagatattattatgagctgatccatcggaacttgctccaaccagatggtttatattttgaccacttcagctgtaagatgcatgacctcttaaggcagcttgcttgttatttgtctagagaagaatgttttgttggggacgtagagtcactagggactaatactatgtgcaaagtgcggcgtatttcagttgtcacagagaaggacatgatggtgttacctagcatcaataaggatcaatataaagtgcgaacgtatagaacctcctatcagaaggcaccgcaagttgatagttcacttttcgagaaacttacatatcttcgtgttttgaatttgactaactcacatgtacaaagaatcccaaattgcattgaaaacatgattcatctgcgcttgcttgatcttgatgggacagatatttctcatctaccggagtccattggttccctgcaaaaccttcaaatattgaacttggagagctgtaaatctctgcaccgccttcctttggcaatcactcagctgtgcaatttgaggcgacttggtctttatggtacaccaataaaccaggtcccaaaagggataggaataatgaaatttctcaatgatttagaaggattcctatcggtggtggaagtgacaatacaaaaatgcaagatggctggaatttggaagagttggctcatctttcacagttgaggtgtcttgatatgataaaattggatagagctactccttgcagcagtacagacccatttctactaacagagaaaaagcatctcaaagttctgaatctgcactgcactgaacagacagatgaagcatattcagaggaaaatgctagaaacattgaaaagatcttcgagaagctaacacctccacacaacttagaagatctttttgttgggaatttctttggttgtagattccccacctggcttggtactaaccacttgccttctgtgaaatacattgccctcatagattgcaaatcttgtgtgcatcttccaccaatcggacagctaccaaacttgaaatatctgagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagtcgctttccccaagcttgaagcattggtcatcaaggatatgcccaactgggaggagtggtcctttgttgaagaagaagaggtgcaggaggaggaagcatctgcagcaggcaaggaagggggagaggatggaactgctgcttcgaagcaaaaggggaaagaagccccgtctccaactccgaggtcgtcgtggctgctgccttgtttgaagaagttgtatcttgaggagtgccccaagctgaggggtctcccacgacagcttagacagcaggccaccaacttgaaggacctccaattaagagaagcagattgcttgaagaaggtggaagacctccggttcctctgcttccttttagttgaaggatgtgaaggcctggagaggctctccaaccttccccaagtgagagacctgcgtgtaacacgttgcccaaatttgaggcatgttgaggagttgggcggtttggagtggctatggctagacgacggtatgctggagatatctcagctgtgggtccctgggcttcaagagcagcaccgccaactccatggagacgagctcgagatcaacgactggcctcgcacatagaattggatgacataaggtatgtacactgattgattgatttggattttgcaccctaatctgctatgctgttcgcatttgatggccttgttagttctttagttgggcacattgactgttcttttgacctgtatgttttgctttcttttgttgcataactttctcatgatcaaggtttcagtgacgatgtgttaaacacaaaccaattagggggccataccctttacttatgtcgtgaccatatggtgtcttgttgacaccctgaatgtgctatgctaaattaatattctatcctacatgtactatgatatgcagcagtgcattacccagaaaatcgaagtattgattagtgctatatacgtactccagataaatatggtaccggttatatcatatagaattgcacatgattgtattgctgttcactagggttggggacaacaattgtttagccttttggtacacaaactgtatagtgcaggactctgcgatgctaggatgcaaaccaaacttgcctgcattttgccttcaatgctacaagggtcttttatgttaagggtgttgtgtgtttaggggtatatcggtaatttcacttgtctatgtactcaacatatatatgccctttgggctaactcaaaagtaactattcattccctaaattgtcacattttatatcggatcttgcatgtgttaggccaacatagtattagtcatttttgatttggccaaaattagtcatgcccagcgaaagggcctgtagcctagtggttccaagagtctcagtagcacctgaggtcctgggttcgactccccgtgggagcgaattttccaggatttaacggcgttgtgctttcagtggtaggcgacgtacccgtcgacagtgaagcgcctgtggtgacttcgtgaatctctccaagatttgccggcccagtcttcgaagatgctcataggggtagggtttgcgtgcgtgcgttcataggggtgagtgcgcgtgcgttgtgagtgtctgcgttgtaccgtgtaattctcaaaaaaaaaaaaagtcaagcccaatgttacagattttcattgcatcctatcagcagggttttgagcatggatcgccttaaagattttcatttgttcctaaggtttgcttggcataaaaaatccatccaaatgcctttatatagcttagatcaatgaatattttagctcatattcctaactattcaattaagaaggagatattgcgacatgcttgtgtggggttcatatgcgatgtttatttggacctttttttttttcctaatgcatgtatgatgtttggtaggtttagttccaaaaaaatgtatgtagcaaaactaatggcacttatatcttatttcccttgattcagttgttaaattgcccaattttctataaatatgccatgtttaatttgtgtgtgttcttttttgtaggttgttaatcttgaagcattgggcaacgaagccactttcttatctatgtgtcatctttaccaagttactggtccatggaagattac
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| CDS seq | atggcaacaatagtagacacattggttggatcatgcatcaataagttgcaagcgatcattacagacaagacaatactcattttaggggtaaaagatgagcttgaagaactgcaacgaagaacaaacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagatttagtagttgaaaaatggcttgaccagctaagagatgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactgcctgactatcctatgtcatcgtcaaggaaatcaactgcttgcagtggcctttcactttcatcctgcttttctaatattcgtatacgtcatgaagttgctgtaaaaattagaagcctgaacaaaaagatcgataacatttcaaaggatgaggtatttttaaaactcaaccgcagacatcataatggaagtggttcagcatggacaccaatagaaagctccagcctagttgaacccaaccttgtgggcaaggaggtcatacgtgcttgcagagaagtggtggatttggtgcttgcacacaagaaaaagaatgtttacaagcttgctattgttggaacaggaggagttggtaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcatgcatgggcttgtgtttccaaggagtattctagggattctcttttgagacaagttcttcgtaatatgggaattcgatatgagcaagatgaatcagttccagagctccaaagaaagattaaatcacacattttaaataaaagtttttttctggtgttggatgatgtgtggaactctgaagcatggacagatttactaagcactccacttcatgcagccgccacaggagtaattctaataactactcgagatgacactattgctagagtaattggggtggactacactcatagggttgatttgatgtcagctgatgtaggatgggagctgctttggaggagcatgaacatcaaccaagagaaacaagtgcaaaatctcaaggacataggtattgagattgttcgcaaatgtggtggccttcctcttgcaatcagagttattgctacagttttagcaagccaagaacaaacagagaatgaatggagacggatattggggaaaaatgcctggtccatgagcaaacttcctcgtgaattaagtggtgctttatatctgagttatgaagtgctgccgcaccaactgaagcaatgttttctttattgtgcacttttccctgaagatgaaaccattttgcgtgacgatcttactaggatgtgggttgctgaaggctttatagatgaggaaaaaggacaattactagaagatacagcagagagatattattatgagctgatccatcggaacttgctccaaccagatggtttatattttgaccacttcagctgtaagatgcatgacctcttaaggcagcttgcttgttatttgtctagagaagaatgttttgttggggacgtagagtcactagggactaatactatgtgcaaagtgcggcgtatttcagttgtcacagagaaggacatgatggtgttacctagcatcaataaggatcaatataaagtgcgaacgtatagaacctcctatcagaaggcaccgcaagttgatagttcacttttcgagaaacttacatatcttcgtgttttgaatttgactaactcacatgtacaaagaatcccaaattgcattgaaaacatgattcatctgcgcttgcttgatcttgatgggacagatatttctcatctaccggagtccattggttccctgcaaaaccttcaaatattgaacttggagagctgtaaatctctgcaccgccttcctttggcaatcactcagctgtgcaatttgaggcgacttggtctttatggtacaccaataaaccagacagatgaagcatattcagaggaaaatgctagaaacattgaaaagatcttcgagaagctaacacctccacacaacttagaagatctttttgttgggaatttctttggttgtagattccccacctggcttggtactaaccacttgccttctgtgaaatacattgccctcatagattgcaaatcttgtgtgcatcttccaccaatcggacagctaccaaacttgaaatatctgagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagtcgctttccccaagcttgaagcattggtcatcaaggatatgcccaactgggaggagtggtcctttgttgaagaagaagaggtgcaggaggaggaagcatctgcagcaggcaaggaagggggagaggatggaactgctgcttcgaagcaaaaggggaaagaagccccgtctccaactccgaggtcgtcgtggctgctgccttgtttgaagaagttgtatcttgaggagtgccccaagctgaggggtctcccacgacagcttagacagcaggccaccaacttgaaggacctccaattaagagaagcagattgcttgaagaaggtggaagacctccggttcctctgcttccttttagttgaaggatgtgaaggcctggagaggctctccaaccttccccaagtgagagacctgcgtgtaacacgttgcccaaatttgaggcatgttgaggagttgggcggtttggagtggctatggctagacgacggtatgctggagatatctcagctgtgggtccctgggcttcaagagcagcaccgccaactccatggagacgagctcgagatcaacgactggcctcgcacatag
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| Protein seq | MATIVDTLVGSCINKLQAIITDKTILILGVKDELEELQRRTNVIRSSLQDAEARRMEDLVVEKWLDQLRDVMYDVDDIIDLARFKGSVLLPDYPMSSSRKSTACSGLSLSSCFSNIRIRHEVAVKIRSLNKKIDNISKDEVFLKLNRRHHNGSGSAWTPIESSSLVEPNLVGKEVIRACREVVDLVLAHKKKNVYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFDHHAWACVSKEYSRDSLLRQVLRNMGIRYEQDESVPELQRKIKSHILNKSFFLVLDDVWNSEAWTDLLSTPLHAAATGVILITTRDDTIARVIGVDYTHRVDLMSADVGWELLWRSMNINQEKQVQNLKDIGIEIVRKCGGLPLAIRVIATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPHQLKQCFLYCALFPEDETILRDDLTRMWVAEGFIDEEKGQLLEDTAERYYYELIHRNLLQPDGLYFDHFSCKMHDLLRQLACYLSREECFVGDVESLGTNTMCKVRRISVVTEKDMMVLPSINKDQYKVRTYRTSYQKAPQVDSSLFEKLTYLRVLNLTNSHVQRIPNCIENMIHLRLLDLDGTDISHLPESIGSLQNLQILNLESCKSLHRLPLAITQLCNLRRLGLYGTPINQTDEAYSEENARNIEKIFEKLTPPHNLEDLFVGNFFGCRFPTWLGTNHLPSVKYIALIDCKSCVHLPPIGQLPNLKYLRIKGASAITKIGPEFVGCWEGNLRSTEAVAFPKLEALVIKDMPNWEEWSFVEEEEVQEEEASAAGKEGGEDGTAASKQKGKEAPSPTPRSSWLLPCLKKLYLEECPKLRGLPRQLRQQATNLKDLQLREADCLKKVEDLRFLCFLLVEGCEGLERLSNLPQVRDLRVTRCPNLRHVEELGGLEWLWLDDGMLEISQLWVPGLQEQHRQLHGDELEINDWPRT |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0023340 | OsGoSa_11g0023340.01 | Chr11 | 29858487 | 29861584 | + | NAM | ||
| CDS seq | atggcaacaatagtagacacattggttggatcatgcatcaataagttgcaagcgatcattacagacaagacaatactcattttaggggtaaaagatgagcttgaagaactgcaacgaagaacaaacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagatttagtagttgaaaaatggcttgaccagctaagagatgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactgcctgactatcctatgtcatcgtcaaggaaatcaactgcttgcagtggcctttcactttcatcctgcttttctaatattcgtatacgtcatgaagttgctgtaaaaattagaagcctgaacaaaaagatcgataacatttcaaaggatgaggtatttttaaaactcaaccgcagacatcataatggaagtggttcagcatggacaccaatagaaagctccagcctagttgaacccaaccttgtgggcaaggaggtcatacgtgcttgcagagaagtggtggatttggtgcttgcacacaagaaaaagaatgtttacaagcttgctattgttggaacaggaggagttggtaagacaacactagctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcatgcatgggcttgtgtttccaaggagtattctagggattctcttttgagacaagttcttcgtaatatgggaattcgatatgagcaagatgaatcagttccagagctccaaagaaagattaaatcacacattttaaataaaagtttttttctggtgttggatgatgtgtggaactctgaagcatggacagatttactaagcactccacttcatgcagccgccacaggagtaattctaataactactcgagatgacactattgctagagtaattggggtggactacactcatagggttgatttgatgtcagctgatgtaggatgggagctgctttggaggagcatgaacatcaaccaagagaaacaagtgcaaaatctcaaggacataggtattgagattgttcgcaaatgtggtggccttcctcttgcaatcagagttattgctacagttttagcaagccaagaacaaacagagaatgaatggagacggatattggggaaaaatgcctggtccatgagcaaacttcctcgtgaattaagtggtgctttatatctgagttatgaagtgctgccgcaccaactgaagcaatgttttctttattgtgcacttttccctgaagatgaaaccattttgcgtgacgatcttactaggatgtgggttgctgaaggctttatagatgaggaaaaaggacaattactagaagatacagcagagagatattattatgagctgatccatcggaacttgctccaaccagatggtttatattttgaccacttcagctgtaagatgcatgacctcttaaggcagcttgcttgttatttgtctagagaagaatgttttgttggggacgtagagtcactagggactaatactatgtgcaaagtgcggcgtatttcagttgtcacagagaaggacatgatggtgttacctagcatcaataaggatcaatataaagtgcgaacgtatagaacctcctatcagaaggcaccgcaagttgatagttcacttttcgagaaacttacatatcttcgtgttttgaatttgactaactcacatgtacaaagaatcccaaattgcattgaaaacatgattcatctgcgcttgcttgatcttgatgggacagatatttctcatctaccggagtccattggttccctgcaaaaccttcaaatattgaacttggagagctgtaaatctctgcaccgccttcctttggcaatcactcagctgtgcaatttgaggcgacttggtctttatggtacaccaataaaccagacagatgaagcatattcagaggaaaatgctagaaacattgaaaagatcttcgagaagctaacacctccacacaacttagaagatctttttgttgggaatttctttggttgtagattccccacctggcttggtactaaccacttgccttctgtgaaatacattgccctcatagattgcaaatcttgtgtgcatcttccaccaatcggacagctaccaaacttgaaatatctgagaattaagggagcaagtgcaatcaccaagattggacccgaatttgttggctgctgggagggtaatctcagatccacagaggcagtcgctttccccaagcttgaagcattggtcatcaaggatatgcccaactgggaggagtggtcctttgttgaagaagaagaggtgcaggaggaggaagcatctgcagcaggcaaggaagggggagaggatggaactgctgcttcgaagcaaaaggggaaagaagccccgtctccaactccgaggtcgtcgtggctgctgccttgtttgaagaagttgtatcttgaggagtgccccaagctgaggggtctcccacgacagcttagacagcaggccaccaacttgaaggacctccaattaagagaagcagattgcttgaagaaggtggaagacctccggttcctctgcttccttttagttgaaggatgtgaaggcctggagaggctctccaaccttccccaagtgagagacctgcgtgtaacacgttgcccaaatttgaggcatgttgaggagttgggcggtttggagtggctatggctagacgacggtatgctggagatatctcagctgtgggtccctgggcttcaagagcagcaccgccaactccatggagacgagctcgagatcaacgactggcctcgcacatag
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| Protein seq | MATIVDTLVGSCINKLQAIITDKTILILGVKDELEELQRRTNVIRSSLQDAEARRMEDLVVEKWLDQLRDVMYDVDDIIDLARFKGSVLLPDYPMSSSRKSTACSGLSLSSCFSNIRIRHEVAVKIRSLNKKIDNISKDEVFLKLNRRHHNGSGSAWTPIESSSLVEPNLVGKEVIRACREVVDLVLAHKKKNVYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFDHHAWACVSKEYSRDSLLRQVLRNMGIRYEQDESVPELQRKIKSHILNKSFFLVLDDVWNSEAWTDLLSTPLHAAATGVILITTRDDTIARVIGVDYTHRVDLMSADVGWELLWRSMNINQEKQVQNLKDIGIEIVRKCGGLPLAIRVIATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPHQLKQCFLYCALFPEDETILRDDLTRMWVAEGFIDEEKGQLLEDTAERYYYELIHRNLLQPDGLYFDHFSCKMHDLLRQLACYLSREECFVGDVESLGTNTMCKVRRISVVTEKDMMVLPSINKDQYKVRTYRTSYQKAPQVDSSLFEKLTYLRVLNLTNSHVQRIPNCIENMIHLRLLDLDGTDISHLPESIGSLQNLQILNLESCKSLHRLPLAITQLCNLRRLGLYGTPINQTDEAYSEENARNIEKIFEKLTPPHNLEDLFVGNFFGCRFPTWLGTNHLPSVKYIALIDCKSCVHLPPIGQLPNLKYLRIKGASAITKIGPEFVGCWEGNLRSTEAVAFPKLEALVIKDMPNWEEWSFVEEEEVQEEEASAAGKEGGEDGTAASKQKGKEAPSPTPRSSWLLPCLKKLYLEECPKLRGLPRQLRQQATNLKDLQLREADCLKKVEDLRFLCFLLVEGCEGLERLSNLPQVRDLRVTRCPNLRHVEELGGLEWLWLDDGMLEISQLWVPGLQEQHRQLHGDELEINDWPRT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0023340 | OsGoSa_11g0023340.02 | Chr11 | 29859899 | 29863109 | + | IsoSeq | ||
| CDS seq | atggaactgctgcttcgaagcaaaaggggaaagaagccccgtctccaactccgaggtcgtcgtggctgctgcctt |
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| Protein seq | MELLLRSKRGKKPRLQLRGRRGCCL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 29.027081 | 26.589233 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676100 | SBH | 1.142762 | 1.287942 | 1.539014 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45180 | SBH | 0.104599 | 0.260963 | 0.175556 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023750 | SBH | 0.000000 | 86.644440 | 2.468501 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023530 | RBH | 0.000000 | 2.995102 | 0.126475 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023180 | SBH | 0.033781 | 12.385487 | 0.134590 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022930 | SBH | 0.037749 | 0.227013 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023710 | SBH | 0.000000 | 0.469667 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0420800 | SBH | 0.2352695 | 1.2420205 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024010 | RBH | 2.781592 | 0.579108 | 0.149604 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0430000 | SBH | 0.0419675 | 0.0645025 | 0.058287 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023740 | SBH | 0.024663 | 0.551611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022320 | SBH | 0.694426 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023280 | SBH | 2.088418 | 9.239458 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023070 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023290 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023570 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023730 | SBH | 1.486182 | 20.188963 | 5.723283 |
