Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsGoSa_11g0021710		OGI:11072790 \| 16/16			GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)			Chr11:28213404-28216888		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		gtaagtaactgtgttgttcatgctccatcagaagagttgaaaacaaatgtaaaaaggttatctggttgtcaaactcaatatctattgatctcagccttttattttcactatatttcttttgcactgtttgaaagactgaactggctgatagcagcagcaaatgaacttcaattctattacagagcagaaaagactcaaaccggtaaatggctttcaacaagtgcatggaccgacaaaaaagtgtcagggcttctgttttccctttggcacctatgtgctactattcattgaggcctgaatctcctccagagttttgccttttgtctctggcacgatcttcacaatgaaaaggatggccactgcgcaaactaatgcgaaaaggaagaatgtccctgcatgaaacagaatgtggtttatctccaaactcatgttacaaatttaacagtaaacttgaaaatgtgtacatttgaactgttccaggactatcctttgcacggttgtagtgaaagacggctaaagtcagcaaaacatgactagagatttggctcacctgaagaactccagctcatgaagaagttgaaggcaaaagaaactgcccatgaaccggaccagttcaccagagtcacaaagcttccaccgattccttttatatttatgggaaatatctgcatccaatacgaacaaacatgctaatgttacactgaattctggttctatttgatgaaatctttagtgaaggctgaaatctggtggttgaatgtttggcactttacctctgacattatgacccaagggactgcccccattcctattgaatagctagcaatgtacacctgtttcagttataaaaatggattttagcacaactgaactacagataaatttcgaaataatcaaacagaataaaaatttcaatgtaccaatatgccagcgagtgcgatgattggtacttgctccaagaaaagcccatgaatctacacaacaaataatgtgcttcaatttggtttacataacccaacaaagatgggtgcaaatcttcttgggggaaaatgcaaaataggcgtaaggattgagtgattttgtcaaatattaccttcaggtagaaggatactgctgacatgagagagccaattaggagtcctgatgttgaaatctggatagaaataaaaggaagtggttaagtgtgtttttcagtagtttctgctgcaacagttccccaagtgctgaaaatttgagtgcacttaccaacagcagtggccttctaccacttctgtccatcagtaatgctccaacagctgtgattggcgcctgttattaacagtatacagtcaaaacttttacttagaatttaaggaaaatttgatcaagttctgcacgtctattattttaacctggatacaccccatcaagattgttcctaggtctcctgaagcaaaccctgcataatgaaccaacaatttagtctgacatctctggaactgacaaaatctagtgttttgaagcgcgaaaaattgcgactttaccggctgatacaaaagtttcactggcatagaacaagattccattaattcctacaaactgctggaacaccatcaggccaacaccaacaatgacaggacggatgtaggctctgttgaaaagatcctgaactccagcctttggaaggttttcaatggtctcaatgaactcctgtatatattgaggaattactgataacaatcacaattttctgcaccataattgtatcttaaaatatactgttaacgatgtcgaaccttgatttctgaagcttcaatggacacatccgcatctttaccacggaggcgttggagcgctatttcaaactccttttgccgtccaacctttgcctgtgttttcaatttggtgctgaattgttagaatggaaattcagaatcaaatctaagtatattgttcaatgccttaccagccaccgaggggattcagtaatgaaggaaagaccaactataagaattatggacggtacaagtcctgtaaatgtgtcaaatacaaaaattatcactaccttgttgtaagttctacatgaccagatgatagtatgggatttttcctatgaatatacctgctatgaccaacatgcgccatgtcaccatagtaccgacaatataagtaacagataacccagtgcacaccagcaactgcagttgaaacgccaatttgatttcaaacactaatatgatatatctttctaaaaagtgttgcagcaccttcaggttgtttagtttttgttaagagtaaaattacttggttcagtgttgtaagccccccacgaagagctttcggagctatttctgctatgaaaaccggtacctgttcagttacaagagctgctgtcagtgaatctaaacaatatgttcagtgctcgaaagattaatatgttcagtaagtgatgtccttgattgatcattcataccacatatgaaaatactcctactccaaatccggtacagaatctcccaaaatcaagtgaaacagcaccctgaaaagttgtgaattcagttaagcagtttcttgacattcttgacttattgaagtataagattaagaaaacgtacttgtgcaaagaagattgcaagccatccgacaatgcaaacaagagcagaagtcctcattgcctgctccactcacaaaactttttggttaatgaattataactcttgatgaattctcacaaagattttaatagataaaagattattcaggcttgtagataccccttttcttccagaaatgtcagcaaggtgcccacttgcaactgctcctatcattgccccaattgttattattgatccgaaaaccgaatactgcggagaataacaggacaacatgatcaggaactgagaattacattgtcctccccttttgggaaacttgtacagaagtagaaattcagttgagaatggcattgcgacaaatttcagaaatactatttgagtgaagtagcgaaaatttcggcaacctcggagagcgagagctgaagatcctccctgatcttggactgagttggtgctgagtaaccaatctgcaagagaataatacaattaattcatgcacttgcaaattcagaagtaatttctgaatgaaatctccattatctaaaggaatgttgacaagtgtgtttcaatcctattctgatctttgaactcaccgagacgccgaagacgaaggagccgagcacggcaacgccggtgctggcgatgaccatggccagcgatccatcgccgccggcccggggaaggagggactcgcttgcaccactggacactcccatggcgatggccttagctgctaactgatgctaaccttcaacaagttcagttcttgcttgaactgaagctacaaccttgagctctgctactaagctgcatatatagtaagtggctttatgtaattaaccgtgtatgcaatgagtgattagagtgcttaacctcgatccttatgcatgt More
CDS seq		atgggagtgtccagtggtgcaagcgagtccctccttccccgggccggcggcgatggatcgctggccatggtcatcgccagcaccggcgttgccgtgctcggctccttcgtcttcggcgtctcgattggttactcagcaccaactcagtccaagatcagggaggatcttcagctctcgctctccgagtattcggttttcggatcaataataacaattggggcaatgataggagcagttgcaagtgggcaccttgctgacatttctggaagaaaaggggcaatgaggacttctgctcttgtttgcattgtcggatggcttgcaatcttctttgcacaaggtgctgtttcacttgattttgggagattctgtaccggatttggagtaggagtattttcatatgtgttgctggtgtgcactgggttatctgttacttatattgtcggtactatggtgacatggcgcatgttggtcatagcaggacttgtaccgtccataattcttatagttggtctttccttcattactgaatcccctcggtggctggcaaaggttggacggcaaaaggagtttgaaatagcgctccaacgcctccgtggtaaagatgcggatgtgtccattgaagcttcagaaatcaaggagttcattgagaccattgaaaaccttccaaaggctggagttcaggatcttttcaacagagcctacatccgtcctgtcattgttggtgttggcctgatggtgttccagcagtttgtaggaattaatggaatcttgttctatgccagtgaaacttttgtatcagccgggtttgcttcaggagacctaggaacaatcttgatggggtgtatccaggcgccaatcacagctgttggagcattactgatggacagaagtggtagaaggccactgctgttgatttcaacatcaggactcctaattggctctctcatgtcagcagtatccttctacctgaagattcatgggcttttcttggagcaagtaccaatcatcgcactcgctggcatattggtgtacattgctagctattcaataggaatgggggcagtcccttgggtcataatgtcagagatatttcccataaatataaaaggaatcggtggaagctttgtgactctggtgaactggtccggttcatgggcagtttcttttgccttcaacttcttcatgagctggagttcttcagggacattcttccttttcgcattagtttgcgcagtggccatccttttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctcaatgaatagtagcacatag More
Protein seq		MGVSSGASESLLPRAGGDGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAVASGHLADISGRKGAMRTSALVCIVGWLAIFFAQGAVSLDFGRFCTGFGVGVFSYVLLVCTGLSVTYIVGTMVTWRMLVIAGLVPSIILIVGLSFITESPRWLAKVGRQKEFEIALQRLRGKDADVSIEASEIKEFIETIENLPKAGVQDLFNRAYIRPVIVGVGLMVFQQFVGINGILFYASETFVSAGFASGDLGTILMGCIQAPITAVGALLMDRSGRRPLLLISTSGLLIGSLMSAVSFYLKIHGLFLEQVPIIALAGILVYIASYSIGMGAVPWVIMSEIFPINIKGIGGSFVTLVNWSGSWAVSFAFNFFMSWSSSGTFFLFALVCAVAILFIVKIVPETKGKTLEEIQASMNSST
Function		Sugar transporter ERD6-like 16 [UniProtKB/Swiss-Prot:Q8LBI9]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsGoSa_11g0021710	OsGoSa_11g0021710.01	Chr11	28213404	28216782	-	NAM
CDS seq	atgggagtgtccagtggtgcaagcgagtccctccttccccgggccggcggcgatggatcgctggccatggtcatcgccagcaccggcgttgccgtgctcggctccttcgtcttcggcgtctcgattggttactcagcaccaactcagtccaagatcagggaggatcttcagctctcgctctccgagtattcggttttcggatcaataataacaattggggcaatgataggagcagttgcaagtgggcaccttgctgacatttctggaagaaaaggggcaatgaggacttctgctcttgtttgcattgtcggatggcttgcaatcttctttgcacaaggtgctgtttcacttgattttgggagattctgtaccggatttggagtaggagtattttcatatgtgttgctggtgtgcactgggttatctgttacttatattgtcggtactatggtgacatggcgcatgttggtcatagcaggacttgtaccgtccataattcttatagttggtctttccttcattactgaatcccctcggtggctggcaaaggttggacggcaaaaggagtttgaaatagcgctccaacgcctccgtggtaaagatgcggatgtgtccattgaagcttcagaaatcaaggagttcattgagaccattgaaaaccttccaaaggctggagttcaggatcttttcaacagagcctacatccgtcctgtcattgttggtgttggcctgatggtgttccagcagtttgtaggaattaatggaatcttgttctatgccagtgaaacttttgtatcagccgggtttgcttcaggagacctaggaacaatcttgatggggtgtatccaggcgccaatcacagctgttggagcattactgatggacagaagtggtagaaggccactgctgttgatttcaacatcaggactcctaattggctctctcatgtcagcagtatccttctacctgaagattcatgggcttttcttggagcaagtaccaatcatcgcactcgctggcatattggtgtacattgctagctattcaataggaatgggggcagtcccttgggtcataatgtcagagatatttcccataaatataaaaggaatcggtggaagctttgtgactctggtgaactggtccggttcatgggcagtttcttttgccttcaacttcttcatgagctggagttcttcagggacattcttccttttcgcattagtttgcgcagtggccatccttttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctcaatgaatagtagcacatag More
Protein seq	MGVSSGASESLLPRAGGDGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAVASGHLADISGRKGAMRTSALVCIVGWLAIFFAQGAVSLDFGRFCTGFGVGVFSYVLLVCTGLSVTYIVGTMVTWRMLVIAGLVPSIILIVGLSFITESPRWLAKVGRQKEFEIALQRLRGKDADVSIEASEIKEFIETIENLPKAGVQDLFNRAYIRPVIVGVGLMVFQQFVGINGILFYASETFVSAGFASGDLGTILMGCIQAPITAVGALLMDRSGRRPLLLISTSGLLIGSLMSAVSFYLKIHGLFLEQVPIIALAGILVYIASYSIGMGAVPWVIMSEIFPINIKGIGGSFVTLVNWSGSWAVSFAFNFFMSWSSSGTFFLFALVCAVAILFIVKIVPETKGKTLEEIQASMNSST More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsGoSa_11g0021710	OsGoSa_11g0021710.02	Chr11	28213404	28216782	-	NAM
CDS seq	atgggagtgtccagtggtgcaagcgagtccctccttccccgggccggcggcgatggatcgctggccatggtcatcgccagcaccggcgttgccgtgctcggctccttcgtcttcggcgtctcgattggttactcagcaccaactcagtccaagatcagggaggatcttcagctctcgctctccgagggtgctgtttcacttgattttgggagattctgtaccggatttggagtaggagtattttcatatgtgttgctggtgtgcactgggttatctgttacttatattgtcggtactatggtgacatggcgcatgttggtcatagcaggacttgtaccgtccataattcttatagttggtctttccttcattactgaatcccctcggtggctggcaaaggttggacggcaaaaggagtttgaaatagcgctccaacgcctccgtggtaaagatgcggatgtgtccattgaagcttcagaaatcaaggagttcattgagaccattgaaaaccttccaaaggctggagttcaggatcttttcaacagagcctacatccgtcctgtcattgttggtgttggcctgatggtgttccagcagtttgtaggaattaatggaatcttgttctatgccagtgaaacttttgtatcagccgggtttgcttcaggagacctaggaacaatcttgatggggtgtatccaggcgccaatcacagctgttggagcattactgatggacagaagtggtagaaggccactgctgttgatttcaacatcaggactcctaattggctctctcatgtcagcagtatccttctacctgaagattcatgggcttttcttggagcaagtaccaatcatcgcactcgctggcatattggtgtacattgctagctattcaataggaatgggggcagtcccttgggtcataatgtcagagatatttcccataaatataaaaggaatcggtggaagctttgtgactctggtgaactggtccggttcatgggcagtttcttttgccttcaacttcttcatgagctggagttcttcagggacattcttccttttcgcattagtttgcgcagtggccatccttttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctcaatgaatagtagcacatag More
Protein seq	MGVSSGASESLLPRAGGDGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEGAVSLDFGRFCTGFGVGVFSYVLLVCTGLSVTYIVGTMVTWRMLVIAGLVPSIILIVGLSFITESPRWLAKVGRQKEFEIALQRLRGKDADVSIEASEIKEFIETIENLPKAGVQDLFNRAYIRPVIVGVGLMVFQQFVGINGILFYASETFVSAGFASGDLGTILMGCIQAPITAVGALLMDRSGRRPLLLISTSGLLIGSLMSAVSFYLKIHGLFLEQVPIIALAGILVYIASYSIGMGAVPWVIMSEIFPINIKGIGGSFVTLVNWSGSWAVSFAFNFFMSWSSSGTFFLFALVCAVAILFIVKIVPETKGKTLEEIQASMNSST More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsGoSa_11g0021710	OsGoSa_11g0021710.03	Chr11	28213454	28216888	-	IsoSeq
CDS seq	atgggcagtttcttttgccttcaacttcttcatgagctggagttcttcagggacattcttccttttcgcattagtttgcgcagtggccatccttttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctcaat
Protein seq	MGSFFCLQLLHELEFFRDILPFRISLRSGHPFHCEDRARDKRQNSGGDSGLN

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
SE	Chr11	28215580	28215856	-	OsGoSa_11g0021710.03	OsGoSa_11g0021710.03,OsGoSa_11g0021710.02,OsGoSa_11g0021710.01	All

Expression

	Leaf	Root	Panicle
FPKM	0.000000	50.172340	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_11g0643800	RBH	0.000000	0.000000	0.671158
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os11g42430	RBH	0.000000	0.000000	0.160854
Nipponbare \| IRGSP 1.0 \| RAP-db	Os11g0643800	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_11g0021810	RBH	0.000000	2.657422	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_11g0021770	RBH	0.000000	6.187627	0.396078
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0021610	RBH	0.000000	52.686256	1.638911
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_11g0021120	RBH	0.000000	5.718041	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_11g0021620	RBH	0.000000	15.376167	5.527867
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_11G0384200	RBH	0.4321295	3.7527035	2.59183
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0022190	RBH	0.000000	5.727972	0.711607
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_11G0404300	RBH	0.0188	0.0149025	0.0467115
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_11g0021960	RBH	0.000000	0.362798	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_11g0022060	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_11g0021300	RBH	0.000000	0.0	0.445266
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0021470	RBH	0.000000	26.671761	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G021450	RBH	0.000000	38.581802	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_11g0022010	RBH	0.000000	59.110474	3.665853

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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