Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021960 | OGI:11072790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27711534-27715018 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtaagtaactgtgttgttcatgctccatcagaagagttgaaaacaaatgtaaaaaggttatctggttgtcaaactcaatatctattgatctcagccttttattttcactatatttcttttgcactgtttgaaagactgaactggctgatagcagcagcaaatgaacttgaattctattacagagcagaaaagactcaaaccggtaaatggctttcaacaagtgcatggaccgacaaaaaagtgtcagggcttctgttttccctttggcacctatgtgctactattcattgaggcctgaatctcctccagagttttgccttttgtctctggcacgatcttcacaatgaaaaggatggccactgcgcaaactaatgcgaaaaggaagaatgtccctgcatgaaacagaatgtggtttatctccaaactcatgttacaaatttaacagtaaacttgaaaatgtgtacatttgaactgttccaggattatcctttgcacggttgtagtgaaagacggctaaagtcagcaaaacatgactagagatttggctcacctgaagaactccagctcatgaagaagttgaaggcaaaagaaactgcccatgaaccggaccagttcaccagagtcacaaagcttccaccgattccttttatatttatgggaaatatctgcatccaatacgaacaaacatgctaatgttacactgaattctggttctatttgatgaaatctttagtgaaggctgaaatctggtggttgaatgtttggcactttacctctgacattatgacccaagggactgcccccattcctattgaatagctagcaatgtacacctgtttcagttataaaaatggattttagcacaactgaactacagataaatttcgaaataatcaaacagaataaaaatttcaatgtaccaatatgccagcgagtgcgatgattggtacttgctccaagaaaagcccatgaatctacacaacaaataatgtgcttcaatttggtttacataacccaacaaagatggGTgcaaatcttcttgggggaaaatgcaaaataggcgtaaggattgagtgattttgtcaaatattaccttcaggtagaaggaTactgctgacatgagagagccaattaggagtcctgatgttgaaatctggatagaaataaaaggaagtggttaagtgtgtttttcagtagtttctgctgtaacagttccccaagtgctgaaaatttgagtgcacttaccaacagcagtggccttctaccacttctgtccatcagtaatgctccaacagctgtgattggcgcctgttattaacagtatacagtcaaaacttttacttagaatttaaggaaaatttgatcaagttctgcacgtctattattttaacctggatacaccccatcaagattgttcctaggtctcctgaagcaaaccctgcataatgaaccaacaatttagtctgacatctctggaactgacaaaatctagtgttttgaagcgcgaaaaattgcgactttaccggctgatacaaaagtttcactggcatagaacaagattccattaattcctacaaactgctggaacaccatcaggccaacaccaacaatgacaggacggatgtaggctctgttgaaaagatcctgaactccagcctttggaaggttttcaatggtctcaatgaactcctgtatatattgaggaattactgataacaatcacaattttctgcaccataattgtatcttaaaatatactgttaacgatgtcgaaccttgatttctgaagcttcaatggacacatccgcatctttaccacggaggcgttggagcgctatttcaaactccttttgccgtccaacctttgcctgtgttttcaatttggtgctgaattgttagaatggaaattcagaatcaaatctaagtatattgttcaatgccttaccagccaccgaggggattcagtaatgaaggaaagaccaactataagaattatggacggtacaagtcctgtaaatgtgtcaaatacaaaaattatcactaccttgttgtaagttctacatgaccaaatgatagtatgggatttttcctatgaatatacctgctatgaccaacatgcgccatgtcaccatagtaccgacaatataagtaacagataacccagtgcacaccagcaactgcagttgaaacgccaatttgatttcaaacactaatatgatatatctttctaaaaagtgttgcagcaccttcaggttgtttagtttttgttaagagtaaaattacttggttcagtgttgtaagccccccacgaagagctttcggagctatttctgctatgaaaaccggtacctgttcagttacaagagctgctgtcagtgaatctaaacaatatgttcagtgctcgaaagattaatatgttcagtaagtgatgtccttgattgatcattcataccacatatgaaaatactcctactccaaatccggtacagaatctcccaaaatcaagtgaaacagcaccctgaaaagttgtgaattcagttaagcagTttcttgacattcttgacttattgaagtataagattaagaaaacgtacttgtgcaaagaagattgcaagccatccgacaatgcaaacaagagcagaagtcctcattgcctgctccactcacaaaactttttggttaatgaattataactcttgatgaattctcacaaagattttaatagataaaagattattcaggcttgtagataccccttttcttccagaaatgtcagcaaggtgcccacttgcaactgctcctatcattgccccaattgttattattgatccgaaaaccgaatactgcggagaataacaggacaacatgatcaggaactgagaattacattgtcctccccttttgggaaacttgtacagaagtagaaattcagttgagaatggcattgcgacaaatttcagaaatactatttgagtgaagtagcgaaaatttcggcaacctcggagagcgagagctgaagatcctccctgatcttggactgagttggtgctgagtaaccaatctgcaagagaataatacaattaattcatgcacttgcaaattcagaagtaatttctgaatgaaatctccattatctaaaggaatgttgacaagtgtgtttcaatcctattctgatctttgaactcaccgagacgccgaagacgaaggagccgagcacggcaacgccggtgctggcgatgaccatggccagcgatccatcgccgccggcccggggaaggagggactcgcttgcaccactggacactcccatggcgatggccttagctgctaactgatgctaaccttcaacaagttcagttcttgcttgaactgaagctacaaccttgagctctgctactaagctgcatatatagtaagtggctttatgtaattaaccgtgtatgcaatgagtgattagagtgcttaacctcgatccttatgcatgt
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| CDS seq | atgggagtgtccagtggtgcaagcgagtccctccttccccgggccggcggcgatggatcgctggccatggtcatcgccagcaccggcgttgccgtgctcggctccttcgtcttcggcgtctcgattggttactcagcaccaactcagtccaagatcagggaggatcttcagctctcgctctccgagtattcggttttcggatcaataataacaattggggcaatgataggagcagttgcaagtgggcaccttgctgacatttctggaagaaaaggggcaatgaggacttctgctcttgtttgcattgtcggatggcttgcaatcttctttgcacaaggtgctgtttcacttgattttgggagattctgtaccggatttggagtaggagtattttcatatgtgttgctggtgtgcactgggttatctgttacttatattgtcggtactatggtgacatggcgcatgttggtcatagcaggacttgtaccgtccataattcttatagttggtctttccttcattactgaatcccctcggtggctggcaaaggttggacggcaaaaggagtttgaaatagcgctccaacgcctccgtggtaaagatgcggatgtgtccattgaagcttcagaaatcaaggagttcattgagaccattgaaaaccttccaaaggctggagttcaggatcttttcaacagagcctacatccgtcctgtcattgttggtgttggcctgatggtgttccagcagtttgtaggaattaatggaatcttgttctatgccagtgaaacttttgtatcagccgggtttgcttcaggagacctaggaacaatcttgatggggtgtatccaggcgccaatcacagctgttggagcattactgatggacagaagtggtagaaggccactgctgttgatttcaacatcaggactcctaattggctctctcatgtcagcagtAtccttctacctgaagattcatgggcttttcttggagcaagtaccaatcatcgcactcgctggcatattggtgtacattgctagctattcaataggaatgggggcagtcccttgggtcataatgtcagagatatttcccataaatataaaaggaatcggtggaagctttgtgactctggtgaactggtccggttcatgggcagtttcttttgccttcaacttcttcatgagctggagttcttcagggacattcttccttttcgcattagtttgcgcagtggccatccttttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctcaatgaatagtagcacatag
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| Protein seq | MGVSSGASESLLPRAGGDGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAVASGHLADISGRKGAMRTSALVCIVGWLAIFFAQGAVSLDFGRFCTGFGVGVFSYVLLVCTGLSVTYIVGTMVTWRMLVIAGLVPSIILIVGLSFITESPRWLAKVGRQKEFEIALQRLRGKDADVSIEASEIKEFIETIENLPKAGVQDLFNRAYIRPVIVGVGLMVFQQFVGINGILFYASETFVSAGFASGDLGTILMGCIQAPITAVGALLMDRSGRRPLLLISTSGLLIGSLMSAVSFYLKIHGLFLEQVPIIALAGILVYIASYSIGMGAVPWVIMSEIFPINIKGIGGSFVTLVNWSGSWAVSFAFNFFMSWSSSGTFFLFALVCAVAILFIVKIVPETKGKTLEEIQASMNSST |
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| Function | Sugar transporter ERD6-like 16 [UniProtKB/Swiss-Prot:Q8LBI9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021960 | OsLima_11g0021960.01 | Chr11 | 27711534 | 27714912 | - | NAM | ||
| CDS seq | atgggagtgtccagtggtgcaagcgagtccctccttccccgggccggcggcgatggatcgctggccatggtcatcgccagcaccggcgttgccgtgctcggctccttcgtcttcggcgtctcgattggttactcagcaccaactcagtccaagatcagggaggatcttcagctctcgctctccgagtattcggttttcggatcaataataacaattggggcaatgataggagcagttgcaagtgggcaccttgctgacatttctggaagaaaaggggcaatgaggacttctgctcttgtttgcattgtcggatggcttgcaatcttctttgcacaaggtgctgtttcacttgattttgggagattctgtaccggatttggagtaggagtattttcatatgtgttgctggtgtgcactgggttatctgttacttatattgtcggtactatggtgacatggcgcatgttggtcatagcaggacttgtaccgtccataattcttatagttggtctttccttcattactgaatcccctcggtggctggcaaaggttggacggcaaaaggagtttgaaatagcgctccaacgcctccgtggtaaagatgcggatgtgtccattgaagcttcagaaatcaaggagttcattgagaccattgaaaaccttccaaaggctggagttcaggatcttttcaacagagcctacatccgtcctgtcattgttggtgttggcctgatggtgttccagcagtttgtaggaattaatggaatcttgttctatgccagtgaaacttttgtatcagccgggtttgcttcaggagacctaggaacaatcttgatggggtgtatccaggcgccaatcacagctgttggagcattactgatggacagaagtggtagaaggccactgctgttgatttcaacatcaggactcctaattggctctctcatgtcagcagtAtccttctacctgaagattcatgggcttttcttggagcaagtaccaatcatcgcactcgctggcatattggtgtacattgctagctattcaataggaatgggggcagtcccttgggtcataatgtcagagatatttcccataaatataaaaggaatcggtggaagctttgtgactctggtgaactggtccggttcatgggcagtttcttttgccttcaacttcttcatgagctggagttcttcagggacattcttccttttcgcattagtttgcgcagtggccatccttttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctcaatgaatagtagcacatag
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| Protein seq | MGVSSGASESLLPRAGGDGSLAMVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAVASGHLADISGRKGAMRTSALVCIVGWLAIFFAQGAVSLDFGRFCTGFGVGVFSYVLLVCTGLSVTYIVGTMVTWRMLVIAGLVPSIILIVGLSFITESPRWLAKVGRQKEFEIALQRLRGKDADVSIEASEIKEFIETIENLPKAGVQDLFNRAYIRPVIVGVGLMVFQQFVGINGILFYASETFVSAGFASGDLGTILMGCIQAPITAVGALLMDRSGRRPLLLISTSGLLIGSLMSAVSFYLKIHGLFLEQVPIIALAGILVYIASYSIGMGAVPWVIMSEIFPINIKGIGGSFVTLVNWSGSWAVSFAFNFFMSWSSSGTFFLFALVCAVAILFIVKIVPETKGKTLEEIQASMNSST
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021960 | OsLima_11g0021960.02 | Chr11 | 27711620 | 27715018 | - | IsoSeq | ||
| CDS seq | atgggcagtttcttttgccttcaacttcttcatgagctggagttcttcagggacattcttccttttcgcattagtttgcgcagtggccatccttttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctcaat |
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| Protein seq | MGSFFCLQLLHELEFFRDILPFRISLRSGHPFHCEDRARDKRQNSGGDSGLN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr11 | 27713710 | 27713986 | - | OsLima_11g0021960.02 | OsLima_11g0021960.01,OsLima_11g0021960.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.362798 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0643800 | RBH | 0.000000 | 0.000000 | 0.671158 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42430 | RBH | 0.000000 | 0.000000 | 0.160854 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0643800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021810 | RBH | 0.000000 | 2.657422 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021770 | RBH | 0.000000 | 6.187627 | 0.396078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021610 | RBH | 0.000000 | 52.686256 | 1.638911 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021120 | RBH | 0.000000 | 5.718041 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021620 | RBH | 0.000000 | 15.376167 | 5.527867 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0384200 | RBH | 0.4321295 | 3.7527035 | 2.59183 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022190 | RBH | 0.000000 | 5.727972 | 0.711607 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0404300 | RBH | 0.0188 | 0.0149025 | 0.0467115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022060 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021710 | RBH | 0.000000 | 50.172340 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021300 | RBH | 0.000000 | 0.0 | 0.445266 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021470 | RBH | 0.000000 | 26.671761 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021450 | RBH | 0.000000 | 38.581802 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022010 | RBH | 0.000000 | 59.110474 | 3.665853 |
