Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_07g0026560 | OGI:07067180 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr07:28513945-28518492 | ||||||||
| Gene Symbol | TS2, RMP8 | ||||||||||
| DNA seq | atgatgcttaacgcagcagccaaaaaacttgtcaggttcgcatcttctccagtaaaaatcgcagcatcttctccagtaaaaaacgttcgtggaaaccgtgaaattttgatgattttaagcatgtttcacgtacactttttgcaGggggaagagcatagctgctcaggtattcttctcctcgtcgtcaagatccagaaagttggatggcaaagtggccgtgataaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggttatcattgccgatatcaaggatgatctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgcctcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtgtacagcaacgccgccatcgcgggtggcgcgcctccggccacgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtccatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccccgccgcgccggttgcatcctctgcacggccagcacggcggcggtgctcggcggcatggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgcagtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggcgaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcgggttcacggtaggcaaggtgctcgtccgggatcctccaggctctgcttgagttggtgtcaagtctggccaaatttggaggttgttgtctcgtcatttcaaatctgtcgttctttctcagtaaactcaatggactattccgtttgcataagtatttcaaatatcgaatcactgtattattgtgattgtgtttatctctccgaaattcgcccgtggtttctggtggctagttgaacagcaaattcaaagtaagcatgcatatatcttgagttgccgacctgccttggaattgaatggaggtctggttgatgacttacatgcatatcccctctgtctaaaaaaaaaagttcaatcctatgtccagatatgtagttagagtttgccTtttttttttgacagagtagtattcagcatccaaaggatggataaaatggatacgtcgagtacatcaaatcaacaaatgatgcttcaccactcgaaccgtcaagactccaaatctctcgtcgagactcaagagatgggcaagtgaggccaataccgaggtaatctacccaagccttaatcattagtggccgttcttcctccattctcaagatggtgaacattaaaccaccggaccttctccattactcccttgcagagatcaccaggtcacaactggtaccaaaccgtctaggtgtcggcaaccaagagtagtaaaccaagactctctcacaaagtaccatggctcaatctcatgcacaatgactaaacaatctctctattttctactaagcacattggttgcaacttatgcactggaggagactagtaatatgcccgtgctaaacgctacggtttgattgtattatctttaataacttttaaatttccatgttagaaaaaaatagtgtcttctatgatctgtgcaattgagctctaactcaattcatgtcgtacatcagatatagttcacacaaagtacaacaatataatattgtgtatcatattacaatgatgtgtacatcaataagggaataaccactttccatatcatcaatatggttcacacgtctaagggtacttatgcactggaggagatgagaaggggcagagggctcgctcaatttcaaggatgcacaatagactcataaaggttgcctcttaagtaatgcctccactagggcactaggataaggagcaatagccaaaccacttgaattcatggtcttatatagcctacatcaaataactaattatttgaggctattacacttttcatgacatgtttgtcagtcaaaccgcccaactaagcacaccgtactttagtccggcggtacaaaaggtcattggggactctaggggtcatctggtagttcgaccggcctttaaacgttggtcagatagacccttatcttagtcaaatcatccaactaagcccaattgtattggacttctatccaacagaaaaaaaaactagccgttggggattcctggagtggacatgcatgttagactcaccacacttggctagacatagtagttggatatggacatcctcgtacatccagttactttattttTAtcaatagatagattaaaatttgtgccaacgcaaatcatttggatgggtgcttctcttttcctcataggcacatagagcctaaaacattgataatttggtatcaatggaaatggcgatttaaaaacacacggaagtttgacaaaatcacataatgttagacaacgtgcgtagccaagataacaaatcattggtgccaccataataacttcaatggaatacgatgtggaatttacaaatgtttaggggaatgctacatgacggtatctcgttcagatgggatgataccttagaggtatcacctgtccttgacaccacaaaacacctctagtcacacactgtatatcgatataggccttggatatgcaccttcacctcactataatagtggagtgctattattataatccaaattctctaacacattggaaaattcttccagacattaaactcactaattattgtcctttagcatactaatagtactacTttttttatcttttaactatttagccgcacccattgtacagactagagatggccaaatgggccgcgcagcctggcacggcctgctcaacggccgggtcgagcaacgccagcccacgtgctccacctacggcctaggcatggcccaataagggtcgggttgtgctgacccaaaagcacgacagcccatcgtgctttctttgatacaagtctatttcgtctccgtcctctttgggctgtgacatgtatatgtccctcctctttgggccgtgtcttatatataactgaaataagtatatttttcctcattcgtattgggaccgtgccatacatatggttgaaataagtctactttagcctCcctgaagttcatgcgcacgacccaactatcgggcCGGGccagcacgggcctgacacctgtcagaccgtgccatgcttgggccaggccgtcggcccgcgggccatatggccatctatagtacagactactgtctgctgagatctctcaactcctggaagtgaagcatcggtaatcaggagtccgttcatgatgctcaacgcagcagccaacaaacttctcaggttcgcatcttctccagtaaaaaacgttcgtgcaaaccgtgaaattttgatgatttcaatcatttttcacgtaaacgcgttgcagggggaagagcatagctgctcaggtgttctccaacggctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcgtcataggagcaccggctccggcctcgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgcccggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcacggcggcggtgctcggcggcgtggcgtcgccggtgtactccatgtcgaaggcggccatcgtcggcatggtgcgcgcggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccatcccgacgccgatggcgctaggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaagggacatcgctggaggtggaagacgtggcgagggcggccgtgttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggtgggcaaagacctcctccgaaatccaccgagctctacttgaggtgcttgaatttatcaggcaaagcat
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| CDS seq | atgatgcttaacgcagcagccaaaaaacttgtcagggggaagagcatagctgctcaggtattcttctcctcgtcgtcaagatccagaaagttggatggcaaagtggccgtgataaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggttatcattgccgatatcaaggatgatctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgcctcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtgtacagcaacgccgccatcgcgggtggcgcgcctccggccacgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtccatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccccgccgcgccggttgcatcctctgcacggccagcacggcggcggtgctcggcggcatggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgcagtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggcgaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcgggttcacgagcatagctgctcaggtgttctccaacggctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcgtcataggagcaccggctccggcctcgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgcccggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcacggcggcggtgctcggcggcgtggcgtcgccggtgtactccatgtcgaaggcggccatcgtcggcatggtgcgcgcggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccatcccgacgccgatggcgctaggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaagggacatcgctggaggtggaagacgtggcgagggcggccgtgttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggtgggcaaagacctcctccgaaatccaccgagctctacttga
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| Protein seq | MMLNAAAKKLVRGKSIAAQVFFSSSSRSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIKDDLGRAVAGELGADAASYTHCDVTVEKDVASAVDLAVARHGRLDVVYSNAAIAGGAPPATLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGMAAPAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMAIGLFSETFPAATAEEVRRMVTREMQELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTSIAAQVFSNGSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAAELGADAASYTHCDVTVEKDVAAAVDLAVARHGRLDVVYSNAGVIGAPAPASLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGVASPVYSMSKAAIVGMVRAVARQLARDGVRVNAISPHAIPTPMALGIIAETFPAATAEEVRRMVTREMQELEGTSLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTVGKDLLRNPPSST |
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| Function | Secoisolariciresinol dehydrogenase (Fragment) [UniProtKB/Swiss-Prot:Q94KL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_07g0026560 | OsGoSa_07g0026560.01 | Chr07 | 28513945 | 28518492 | + | NAM | ||
| CDS seq | atgatgcttaacgcagcagccaaaaaacttgtcagggggaagagcatagctgctcaggtattcttctcctcgtcgtcaagatccagaaagttggatggcaaagtggccgtgataaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggttatcattgccgatatcaaggatgatctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgcctcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtgtacagcaacgccgccatcgcgggtggcgcgcctccggccacgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtccatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccccgccgcgccggttgcatcctctgcacggccagcacggcggcggtgctcggcggcatggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgcagtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggcgaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcgggttcacgagcatagctgctcaggtgttctccaacggctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcgtcataggagcaccggctccggcctcgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgcccggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcacggcggcggtgctcggcggcgtggcgtcgccggtgtactccatgtcgaaggcggccatcgtcggcatggtgcgcgcggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccatcccgacgccgatggcgctaggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaagggacatcgctggaggtggaagacgtggcgagggcggccgtgttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggtgggcaaagacctcctccgaaatccaccgagctctacttga
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| Protein seq | MMLNAAAKKLVRGKSIAAQVFFSSSSRSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIKDDLGRAVAGELGADAASYTHCDVTVEKDVASAVDLAVARHGRLDVVYSNAAIAGGAPPATLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGMAAPAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMAIGLFSETFPAATAEEVRRMVTREMQELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTSIAAQVFSNGSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAAELGADAASYTHCDVTVEKDVAAAVDLAVARHGRLDVVYSNAGVIGAPAPASLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGVASPVYSMSKAAIVGMVRAVARQLARDGVRVNAISPHAIPTPMALGIIAETFPAATAEEVRRMVTREMQELEGTSLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTVGKDLLRNPPSST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0664500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46950 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0664600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026790 | RBH | 0.0 | 0.0 | 0.658171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026830 | SBH | 0.0 | 0.0 | 3.480390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026650 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026390 | SBH | 0.000000 | 0.104732 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026660 | RBH | 0.0 | 0.0 | 1.321732 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0455200 | SBH | 1.909187 | 0.9786 | 0.1270485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027130 | RBH | 0.000000 | 0.0 | 0.047521 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0468200 | SBH | 0.421096 | 1.6316815 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026850 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026520 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026850 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026340 | RBH | 0.0 | 0.706287 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026570 | RBH | 0.0 | 0.0 | 0.585537 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026340 | SBH | 0.098370 | 0.0 | 0.618520 |
