Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0009630 | OGI:04071690 | 13/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:7103205-7106548 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggtatgtttctttctcttgtttgagaggacttttgtgttgaaaatattcttactgttattgtattatcttattttatagtgaaacaagttgggaagaagttgttaataagagattgcccagggaaataggtaaaagaaatttccatccaagatttaataactgatccattctcatcctgggtaaagtccatcttattgtgatagaaatgaagagaaataaataagctttagttaatgtaataaagatactcattgtcatttctaaaattccaaccattttattcatttggaaaaatccaaaaaaggatatatagggaatagacaaattccacccgcctaagtagagaactgttacaaataaAGaggaaactaataaatttaggtaagaaacaagataaaataaaccatatttgataccagaatattcggtttgataacctgctactaattcttcctccgcttctggtaaatcaaagggtaatctttcacattccgccaaagaagaaattagaaaaaccagAaaacctataggctgacgccaaagattccatccaaaaaaaccatattttgactgtgcttcaactatatcaactgtacttgaactgttggataatcatagtcgacgataacatcacagttcccaccgctattccaaaaccgtacatgaaaccttagtttcatacggctcctctatgatcagaaaaaaggaaagtactgtttcatttcgttattatcttcttgggcgtagttagaattatctaagatAaaatcgatttcaacgtcctaaattagaccaaaggaattctgtctgctagaataataaaaaacgcttcggaattcatctcatcctttataatataatggtactttttctttgttcagcaataacttaatcttggaataaaacactcgttataacaattaataaacgaaaagagttgggtattagttcatgaagaattctgtatgaatatggataaacgacggaaagaataaataaagatctttttttttgtattgcattccatatcttttgtcctattcttctttccccgaggggtatttAaaaagaaaaaaggaataaagggttaattcgttcttgatagccatttccttaacaagtgaatgggaacatactctggatcggaatccgaagaaagtactacttgctcatttccaccaatttcaagtccttattatgattccttttatgaggaaaaatatctaatgctttagattccctcattactaatcctttatgtactttagtgtttctaatccctcactaacttttgaTggattcccttatgattacaactttctgtatcgggaatcccttattattgcccgcttcaagatatgatgactaatcaaaaaatctcaaccttggggtaaagaatttacaccgcttatgtttacttccattttttcttgtacataggaaatgagattttttctttttactacaaattaataagcagttttgtttcactcatatagctatctagtttaacttactaacctgaatatagaataagAaaaggaggataaatattcaatgaatttcagaggaaaaagatcctattttaacgaatcgcacgtagagatattgctagtacacaaaaagttaatgggatttcataactaatagattgagcggcagctcgtagaccacctgaaaaagaataTttattatttgagctatatcctgccataagaagaccaataggagcaatacttgaaatggcaatccataaaaaaaCACCAATACTAAGATCCGCTAAAACAAAGCGATATCCCAAAGGAATAACTAAAAAACTTAATAAAATTGATATGACTGCTATAGACGGTCCAATGCTAAATAAGGGAATATCCCCTCGGGATGGCAAGATATCCTCTTTAAAAAGTAGCTTAGTTCCATCTGCTATAGCTTGAAGCAGTCCCAGGGGGCCAGCATATTCAGGACCAATACGTTGTTGTATCGATGCGGATATTTCTCTTTCTAACCACACAATTACGAGTACTTCTATTGTGATTCCCAGTAAGAGGGTCAAAATGGGTAGAATCCATATCAGTCCATAGACTTCTTTTAATAATTCCAAGTTCGAAAAAGAATTGATAGCTTCTACCTGTACCCTGTCTATTATCATTTCAACGATCAACTTCTCCCATAATGATATCTATACTACCTAATATCGTCATGATATCAGCCAATTTCATTTTTTTGACTAGCTGAGGAAGAATTTGCAAATTAATAAAACCGGGTGGACGAATTTTCCATCTCCAGGGGAAAAGACTATCATCTCCTACCAGATAAATTCCTAATTCACCTTTTGGGGCTTCCACTCTTGCATAAAGCTCTTGTTTTGACAATTCAAAATTGGGTGAAGGTTTTTTACCAAGAAATCGATATTCAAAATCATTCCATTCGGAATTCTTTGCTTTCTTAAAGCGTCGGACTTCTAAATTCTCATAAGGGCCCCCAGGAATTTTTTCTACAGCCTGTTGAATAATTTTGATGGATTCCCTCATTTCACCGATTCGTACTAAATAGCGTGCTAATGAATCCCCTTCTTTTTGCCATTGGACTTTCCAATCGAATTGATTGTAAGACTCGTAAAGATCAACTTTACGAAGATCCCATTGTATTCCAGAAGCTCGTAACATGGGGCCCGATAAGCCCCAATTTACAGCTTCTTCTCCGCTAATAAAACCAACTCCCTCAACTCGTTCCAAAAAAATGGGATTCTGTGTAATAAGTTGTTGATATTCAATAACTCCTCGTAAAAAATAATCACAGAAATCTAAACATTTATCGATCCATCCATAAGGCAGATCGGCAGCAACTCCTCCGATGCGAAAGTAATTATGCATCATTCGCATACCTGTAGCAGCTTCAAATAGATCATATATTAATTCTCTCTCTCTAAAAATATAAaaaaaaaggagtctgcgcaccgagatctgccataaaaggtccaagccataacaagtgagaagctatacggctcaattctaacataattaccctaatatagctggctctttggggtatttgaatattctccaagaattctggtgcatttaccgttattgcttctgtaaacatagtagctaaataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgactatcatgagatcttttcttgtaagcggtagactcatatcctttctt
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| CDS seq | atgagtctaccgcttacaagaaaagatctcatgatagtcaatatgggccctcagcacccatcaatgcatggtgttcttcgactgatcgttactctcgatggtgaagatgttattgattgtgaacccatattaggctatttacacagaggaatggaaaaaatcgcggaaaaccgaactattatacaatacttaccttatgtaacacgttgggattatttagctactatgtttacagaagcaataacggtaaatgcaccagaattcttggagaatattcaaataccccaaagagccagctatattagggtaattatgttagaattgagccgtatagcttctcacttgttatggcttggaccttttatggcagatctcgGTATGCGAATGATGCATAATTACTTTCGCATCGGAGGAGTTGCTGCCGATCTGCCTTATGGATGGATCGATAAATGTTTAGATTTCTGTGATTATTTTTTACGAGGAGTTATTGAATATCAACAACTTATTACACAGAATCCCATTTTTTTGGAACGAGTTGAGGGAGTTGGTTTTATTAGCGGAGAAGAAGCTGTAAATTGGGGCTTATCGGGCCCCATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATTGGAAAGTCCAATGGCAAAAAGAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCCATCAAAATTATTCAACAGGCTGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGACGCTTTAAGAAAGCAAAGAATTCCGAATGGAATGATTTTGAATATCGATTTCTTGGTAAAAAACCTTCACCCAATTTTGAATTGTCAAAACAAGAGCTTTATGCAAGAGTGGAAGCCCCAAAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTGGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAgatatagctcaaataataaAtattctttttcaggtggtctacgagctgccgctcaatctattaatggactttacccaggatgagaatggatcagttattaaatcttggatggaaatttcttttacctatttccctgggcaatctcttattaacaacttcttcccaacttgtttcactataaaataa
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| Protein seq | MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRRFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIADIAQIINILFQVVYELPLNLLMDFTQDENGSVIKSWMEISFTYFPGQSLINNFFPTCFTIK |
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| Function | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [UniProtKB/Swiss-Prot:P0C337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0009630 | OsGoSa_02g0009630.01 | Chr02 | 7103273 | 7106548 | - | NAM | ||
| CDS seq | atgagtctaccgcttacaagaaaagatctcatgatagtcaatatgggccctcagcacccatcaatgcatggtgttcttcgactgatcgttactctcgatggtgaagatgttattgattgtgaacccatattaggctatttacacagaggaatggaaaaaatcgcggaaaaccgaactattatacaatacttaccttatgtaacacgttgggattatttagctactatgtttacagaagcaataacggtaaatgcaccagaattcttggagaatattcaaataccccaaagagccagctatattagggtaattatgttagaattgagccgtatagcttctcacttgttatggcttggaccttttatggcagatctcgGTATGCGAATGATGCATAATTACTTTCGCATCGGAGGAGTTGCTGCCGATCTGCCTTATGGATGGATCGATAAATGTTTAGATTTCTGTGATTATTTTTTACGAGGAGTTATTGAATATCAACAACTTATTACACAGAATCCCATTTTTTTGGAACGAGTTGAGGGAGTTGGTTTTATTAGCGGAGAAGAAGCTGTAAATTGGGGCTTATCGGGCCCCATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATTGGAAAGTCCAATGGCAAAAAGAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCCATCAAAATTATTCAACAGGCTGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGACGCTTTAAGAAAGCAAAGAATTCCGAATGGAATGATTTTGAATATCGATTTCTTGGTAAAAAACCTTCACCCAATTTTGAATTGTCAAAACAAGAGCTTTATGCAAGAGTGGAAGCCCCAAAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTGGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAgatatagctcaaataataaAtattctttttcaggtggtctacgagctgccgctcaatctattaatggactttacccaggatgagaatggatcagttattaaatcttggatggaaatttcttttacctatttccctgggcaatctcttattaacaacttcttcccaacttgtttcactataaaataa
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| Protein seq | MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRRFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIADIAQIINILFQVVYELPLNLLMDFTQDENGSVIKSWMEISFTYFPGQSLINNFFPTCFTIK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0009630 | OsGoSa_02g0009630.02 | Chr02 | 7103205 | 7103351 | - | IsoSeq | ||
| CDS seq | atggaaatttcttttacctatttccctgggcaatctcttattaacaacttcttcccaacttgtttcactata |
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| Protein seq | MEISFTYFPGQSLINNFFPTCFTI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1245.698364 | 89.713905 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16732 | RBH | 41.371002 | 39.371120 | 5.667976 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015500 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015640 | RBH | 6.317677 | 1.474350 | 12.904922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015540 | RBH | 16.797852 | 0.000000 | 16.628231 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015380 | RBH | 28.055649 | 1.475583 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002590 | RBH | 47.423012 | 26.613045 | 37.904385 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0215200 | SBH | 184.132141 | 23.1841435 | 49.12969 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024460 | RBH | 24.760839 | 1.161248 | 7.735779 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0083600 | RBH | 567.4431305 | 34.887865 | 75.9527855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015191 | RBH | 43.328491 | 0.392809 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003120 | RBH | 22.328974 | 29.166216 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009640 | RBH | 17.660044 | 1.086014 | 10.170137 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002580 | RBH | 44.273521 | 18.375374 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006470 | RBH | 0.035431 | 0.001911 | 0.015594 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0014920 | RBH | 134.723175 | 45.555649 | 142.943100 |
