Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0002580 | OGI:04071690 | 13/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:1917922-1920919 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagctgataattaagctacaagttctctttctccagcgatcggctggatcattaccacataatatatatattccttgttattttgatctcttaatttgtaaaataaaccatatttgataccagaatattcggtttgataacctgctactaattcttcctccgcttctggtaaatcaaagggtaatctttcacattccgccaaagaagaaattagaaaaaccagaaaacctataggctgaCgccaaagattccatCcCAAAAAAACCATATTTTGACTGTGCTTCAACTATATCAACTGTACTTGAACTGTTGGATAATCATAGTCGACGATAACATCACAGTTCCCACCGCTATTCCAAAACCGTACATGAAACCTTAGTTTCATACGGCTCCTCTATGATCAGAAAAAAGGAAAGTACTGTTTCATTTCGTTATTATCTTCTTGGGCGTAGTTAGAATTATCTAAGATAAAATCGATTTCAACGTCCTAAATTAGACCAAAGGAATTCTGTCTGCTAGAATAATAAAAAACGCTTCGGAATTCATCTCATCCTTTATAATATAATGGTACTTTTTCTTTGTTCAGCAATAACTTAATCTTGGAATAAAACACTCGTTATAACAATTAATAAACGAAAAGAGTTGGGTATTAGTTCATGAAGAATTCTGTATGAATATGGATAAACGACGGAAAGAATAAATAAAGATCTTTTTTTTTGTTGtattgcattccatatcttttgtcctattcttctttccccgaggggtatttaaaaagaaaaaaggaataaagggttaattcgttcttgatagccatttccttaacaagtgaatgggaacatactctggatcggaatccgaagaaagtactacttgctcatttccaccaatttcaagtccttattatgattccttttatgaggaaaaatatctaatgctttagattccctcattactaatcctttatgtactttagtgtttctaatccctcactaacttttgatggattcccttatgattacaactttctgtatcgggaatcccttattattgcccgcttcaagatatgatgactaatcaaaaaatctcaaccttggggtaaagaatttacaccgcttatgtttacttccattttTtcttgtacataggaaatgagattttttctttttactacaaattaataagcagttttgtttcactcatatagctatctagtttaacttactaacctgaatatagaataagaaaaggaggataaatattcaatgaatttcagaggaaaaagatcctattttaaCgaatcgcacgtagagatattgctagtacacaaaaaGTTAATGGGATTTCATAACTAATAGATTGAGCGGCAGCTCGTAGACCACCTGAAAAAGAATATTTATTATTTAAGCTATATCCTGCCATAAGAAGACCAATAGGAGCAATACTTGAAATGGCAATCCATAAAAAAACACCAATACTAAGATCCGCTAAAACAAAGCGATATCCCAAAGGAATAACTAAAAAACTTAATAAAATTGATATGACTGCTATAGACGGTCCAATGCTAAATAAGGGAATATCCCCTCGGGATGGCAAGATATCCTCTTTAAAAAGTAGCTTAGTTCCATCTGCTATAGCTTGAAGCAGTCCCAGGGGGCCAGCATATTCAGGACCAATACGTTGTTGTATCGATGCGGATATTTCTCTTTCTAACCACACAATTACGAGTACTTCTATTGTGATTCCCAGTAAGAGGGTCAAAATGGGTAGAATCCATATCAGTCCATAGACTTCTTTTAATAATTCCAAGTTCGAAAAAGAATTGATAGCTTCTACCTGTACCCTGTCTATTATCATTTCAACGATCAACTTCTCCCATAATGATATCTATACTACCTAATATCGTCATGATATCAGCCAATTTCAtttttttgactagctgaggaagaatttgcaaattaataaaacCgggtggacgaattttccatctccaggggaaaagactatcatctcctaccagataaattcctaattcaccttttggggcttccactcttgcataaagctcttgttttgacaattcaaaattgggtgaaggttttttaccaagaaatcgatattcaaaatcattccattcggaattctttgctttcttaaagcGtcggacttctaaattctcataagggcccccaGgaattttttctacagcctgttgaataattttgatGgattccctcatttcaccgattcgtactaaatagcgtgctaatgaatccccttctttttgccattggactttccaatcgaattgattgtaagactcgtaaagatcaactttacgaagatcccattgtattccagaagctcgtaacatggggcccgataagccCCAATTTAcagcttcttctccgctaataaaaccaactccctcaactcgttccaaaaaaatgggattctgtgtaataagttgttgatattcaataactcctcgtAaaaaataatcacagaaatctaaacatttatcgatccatccataaggcagatcggcagcaactcctccgatgcgaaagtaattatgcatcattcgcatacctgtagcaGcttcaaatagatcatatattaattctctctctctaaaaatataaaaaaaaggagtctgcgcaccgagatctgccataaaaggtccaagccataacaagtgagaagctatacggctcaattctaacataattaccctaatatagctggctctttggggtatttgaatattctccAagaattctggtgcatttaccgttattgcttctgtaaacatagtagctaaataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatcgagagtaacgatcagtcgaagaacacCatgcattgatgggtGctgagggcccat
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| CDS seq | atgggccctcagCacccatcaatgcatGgtgttcttcgactgatcgttactctcgatggtgaagatgttattgattgtgaacccatattaggctatttacacagaggaatggaaaaaatcgcggaaaaccgaactattatacaatacttaccttatgtaacacgttgggattatttagctactatgtttacagaagcaataacggtaaatgcaccagaattctTggagaatattcaaataccccaaagagccagctatattagggtaattatgttagaattgagccgtatagcttctcacttgttatggcttggaccttttatggcagatctcggtgcgcagactccttttttttatatttttagagagagagaattaatatatgatctatttgaagCtgctacaggtatgcgaatgatgcataattactttcgcatcggaggagttgctgccgatctgccttatggatggatcgataaatgtttagatttctgtgattatttttTacgaggagttattgaatatcaacaacttattacacagaatcccatttttttggaacgagttgagggagttggttttattagcggagaagaagctgTAAATTGGggcttatcgggccccatgttacgagcttctggaatacaatgggatcttcgtaaagttgatctttacgagtcttacaatcaattcgattggaaagtccaatggcaaaaagaaggggattcattagcacgctatttagtacgaatcggtgaaatgagggaatcCatcaaaattattcaacaggctgtagaaaaaattcCtgggggcccttatgagaatttagaagtccgaCgctttaagaaagcaaagaattccgaatggaatgattttgaatatcgatttcttggtaaaaaaccttcacccaattttgaattgtcaaaacaagagctttatgcaagagtggaagccccaaaagTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTGGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAGTGGTCTACGAGCTGCCGCTCAATCTATTAcctataggttttctggtttttctaatttcttctttggcggaatgtgaaagattaccctttgatttaccagaagcggaggaagaattagtagcaggttatcaaaccgaatattctggtatcaaatatggtttattttacaaattaagagatcaaaataacaaggaatatatatattatgtggtaatgatccagccgatcgctggagaaagagaacttgtagcttaa
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| Protein seq | MGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRRFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVVYELPLNLLPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYKLRDQNNKEYIYYVVMIQPIAGERELVA |
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| Function | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [UniProtKB/Swiss-Prot:P0C337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0002580 | OsLaMu_05g0002580.01 | Chr05 | 1917922 | 1920919 | - | NAM | ||
| CDS seq | atgggccctcagCacccatcaatgcatGgtgttcttcgactgatcgttactctcgatggtgaagatgttattgattgtgaacccatattaggctatttacacagaggaatggaaaaaatcgcggaaaaccgaactattatacaatacttaccttatgtaacacgttgggattatttagctactatgtttacagaagcaataacggtaaatgcaccagaattctTggagaatattcaaataccccaaagagccagctatattagggtaattatgttagaattgagccgtatagcttctcacttgttatggcttggaccttttatggcagatctcggtgcgcagactccttttttttatatttttagagagagagaattaatatatgatctatttgaagCtgctacaggtatgcgaatgatgcataattactttcgcatcggaggagttgctgccgatctgccttatggatggatcgataaatgtttagatttctgtgattatttttTacgaggagttattgaatatcaacaacttattacacagaatcccatttttttggaacgagttgagggagttggttttattagcggagaagaagctgTAAATTGGggcttatcgggccccatgttacgagcttctggaatacaatgggatcttcgtaaagttgatctttacgagtcttacaatcaattcgattggaaagtccaatggcaaaaagaaggggattcattagcacgctatttagtacgaatcggtgaaatgagggaatcCatcaaaattattcaacaggctgtagaaaaaattcCtgggggcccttatgagaatttagaagtccgaCgctttaagaaagcaaagaattccgaatggaatgattttgaatatcgatttcttggtaaaaaaccttcacccaattttgaattgtcaaaacaagagctttatgcaagagtggaagccccaaaagTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTGGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAGTGGTCTACGAGCTGCCGCTCAATCTATTAcctataggttttctggtttttctaatttcttctttggcggaatgtgaaagattaccctttgatttaccagaagcggaggaagaattagtagcaggttatcaaaccgaatattctggtatcaaatatggtttattttacaaattaagagatcaaaataacaaggaatatatatattatgtggtaatgatccagccgatcgctggagaaagagaacttgtagcttaa
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| Protein seq | MGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRRFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVVYELPLNLLPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYKLRDQNNKEYIYYVVMIQPIAGERELVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0002580 | OsLaMu_05g0002580.02 | Chr05 | 1919092 | 1920216 | - | IsoSeq | ||
| CDS seq | ATGATAATAGACAGGGTACAGGTAGAAGCTATCAATTCTTTTTCGAACTTGGAATTATTAAAAGAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTGGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAGTCATATCAATTTTATTAAGTTTTTTAGTTATTCCTTTGGGATATCGCTTTGTTTTAGCGGATCTTAGTATTGGTGTTTTTTTATGGATTGCCATTTCAAGTATTGCTCCTATTGGTCTTCTTATGGCAGGATATAGCTTAAATAATAAATATTCTTTTTCAGGTGGTCTACGAGCTGCCGCTCAATCTATTAGTTATGAAATCCCATTAACtttttgtgtactagcaatatctctacgtgcgatt
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| Protein seq | MIIDRVQVEAINSFSNLELLKEVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSLNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLRAI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 44.273521 | 18.375374 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16732 | RBH | 41.371002 | 39.371120 | 5.667976 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016770 | SBH | 1.539027 | 0.000000 | 2.548462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017520 | SBH | 1.434488 | 0.000000 | 1.143250 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002560 | RBH | 1.395324 | 1.672495 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016970 | SBH | 1.745644 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002580 | RBH | 67.454109 | 3.080310 | 52.972736 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002520 | RBH | 1.494651 | 0.000000 | 0.437480 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0030300 | RBH | 7.0434865 | 0.3332865 | 0.802593 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003070 | SBH | 3.442496 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009630 | RBH | 1245.698364 | 89.713905 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002560 | RBH | 0.209263 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002430 | RBH | 1.679010 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002610 | RBH | 1.750406 | 0.000000 | 0.000000 |
