Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g16732 | OGI:04071690 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9104109-9105300 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGAAAGGATATGAGTCTACCGCTTACAAGAAAAGATCTCATGATAGTCAATATGGGCCCTCAGCACCCATCAATGCATGGTGTTCTTCGACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATCGCGGAAAACCGAACTATTATACAATACTTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACGGTAAATGCACCAGAATTCTTGGAGAATATTCAAATACCCCAAAGAGCCAGCTATATTAGGGTAATTATGTTAGAATTGAGCCGTATAGCTTCTCACTTGTTATGGCTTGGACCTTTTATGGCAGATCTCGGTGCGCAGACTCCTTTTTTTTATATTTTTAGAGAGAGAGAATTAATATATGATCTATTTGAAGCTGCTACAGGTATGCGAATGATGCATAATTACTTTCGCATCGGAGGAGTTGCTGCCGATCTGCCTTATGGATGGATCGATAAATGTTTAGATTTCTGTGATTATTTTTTACGAGGAGTTATTGAATATCAACAACTTATTACACAGAATCCCATTTTTTTGGAACGAGTTGAGGGAGTTGGTTTTATTAGCGGAGAAGAAGCTGTAAATTGGGGCTTATCGGGCCCCATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATTGGAAAGTCCAATGGCAAAAAGAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCAATCAAAATTATTCAACAGGCTGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGATGCTTTAAGAAAGCAAAGAATTCCGAATGGAATGATTTTGAATATCGATTTCTTGGTAAAAAACCTTCACCCAATTTTGAATTGTCAAAACAAGAGCTTTATGCAAGAGTGGAAGCCCCAAAAGGTGAATTAGGAATTTATCTGGTAGGAGATGATAGTCTTTTCCCCTGGAGATGGAAAATTCGTCCACCCGGTTTTATTAATTTGCAAATTCTTCCTCAGCTAGTCAAAAAAATGAAATTGGCTGATATCATGACGATATTAGGTAGTATAGATATCATTATGGGAGAAGTTGATCGTTGA
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| CDS seq | ATGAGTCTACCGCTTACAAGAAAAGATCTCATGATAGTCAATATGGGCCCTCAGCACCCATCAATGCATGGTGTTCTTCGACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATCGCGGAAAACCGAACTATTATACAATACTTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACGGTAAATGCACCAGAATTCTTGGAGAATATTCAAATACCCCAAAGAGCCAGCTATATTAGGGTAATTATGTTAGAATTGAGCCGTATAGCTTCTCACTTGTTATGGCTTGGACCTTTTATGGCAGATCTCGGTGCGCAGACTCCTTTTTTTTATATTTTTAGAGAGAGAGAATTAATATATGATCTATTTGAAGCTGCTACAGGTATGCGAATGATGCATAATTACTTTCGCATCGGAGGAGTTGCTGCCGATCTGCCTTATGGATGGATCGATAAATGTTTAGATTTCTGTGATTATTTTTTACGAGGAGTTATTGAATATCAACAACTTATTACACAGAATCCCATTTTTTTGGAACGAGTTGAGGGAGTTGGTTTTATTAGCGGAGAAGAAGCTGTAAATTGGGGCTTATCGGGCCCCATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATTGGAAAGTCCAATGGCAAAAAGAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCAATCAAAATTATTCAACAGGCTGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGATGCTTTAAGAAAGCAAAGAATTCCGAATGGAATGATTTTGAATATCGATTTCTTGGTAAAAAACCTTCACCCAATTTTGAATTGTCAAAACAAGAGCTTTATGCAAGAGTGGAAGCCCCAAAAGGTGAATTAGGAATTTATCTGGTAGGAGATGATAGTCTTTTCCCCTGGAGATGGAAAATTCGTCCACCCGGTTTTATTAATTTGCAAATTCTTCCTCAGCTAGTCAAAAAAATGAAATTGGCTGATATCATGACGATATTAGGTAGTATAGATATCATTATGGGAGAAGTTGATCGTTGA
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| Protein seq | MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRCFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRWKIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR |
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| Function | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [UniProtKB/Swiss-Prot:P0C337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g16732 | LOC_Os04g16732.1 | Chr04 | 9104109 | 9105300 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGTCTACCGCTTACAAGAAAAGATCTCATGATAGTCAATATGGGCCCTCAGCACCCATCAATGCATGGTGTTCTTCGACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATCGCGGAAAACCGAACTATTATACAATACTTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACGGTAAATGCACCAGAATTCTTGGAGAATATTCAAATACCCCAAAGAGCCAGCTATATTAGGGTAATTATGTTAGAATTGAGCCGTATAGCTTCTCACTTGTTATGGCTTGGACCTTTTATGGCAGATCTCGGTGCGCAGACTCCTTTTTTTTATATTTTTAGAGAGAGAGAATTAATATATGATCTATTTGAAGCTGCTACAGGTATGCGAATGATGCATAATTACTTTCGCATCGGAGGAGTTGCTGCCGATCTGCCTTATGGATGGATCGATAAATGTTTAGATTTCTGTGATTATTTTTTACGAGGAGTTATTGAATATCAACAACTTATTACACAGAATCCCATTTTTTTGGAACGAGTTGAGGGAGTTGGTTTTATTAGCGGAGAAGAAGCTGTAAATTGGGGCTTATCGGGCCCCATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATTGGAAAGTCCAATGGCAAAAAGAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCAATCAAAATTATTCAACAGGCTGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGATGCTTTAAGAAAGCAAAGAATTCCGAATGGAATGATTTTGAATATCGATTTCTTGGTAAAAAACCTTCACCCAATTTTGAATTGTCAAAACAAGAGCTTTATGCAAGAGTGGAAGCCCCAAAAGGTGAATTAGGAATTTATCTGGTAGGAGATGATAGTCTTTTCCCCTGGAGATGGAAAATTCGTCCACCCGGTTTTATTAATTTGCAAATTCTTCCTCAGCTAGTCAAAAAAATGAAATTGGCTGATATCATGACGATATTAGGTAGTATAGATATCATTATGGGAGAAGTTGATCGTTGA
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| Protein seq | MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRCFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRWKIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 41.371002 | 39.371120 | 5.667976 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21394 | RBH | 37.535622 | 35.148968 | 5.206158 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006720 | SBH | 40.240730 | 18.384823 | 68.010399 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003590 | SBH | 69.100227 | 12.209844 | 83.776642 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007710 | SBH | 23.528021 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015380 | RBH | 28.055649 | 1.475583 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024460 | RBH | 24.760839 | 1.161248 | 7.735779 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0083600 | RBH | 567.4431305 | 34.887865 | 75.9527855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009630 | RBH | 1245.698364 | 89.713905 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019950 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002580 | RBH | 44.273521 | 18.375374 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006465 | RBH | 77.497734 | 10.526319 | 47.873775 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004700 | RBH | 199.033234 | 82.940857 | 178.329147 |
