Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0015191 | OGI:02037480 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:13877301-13879580 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaaaattcatccacccggttttattaatttgcaaattcttcctcagctagtcaaaaaaaatgaaattggctgatattatgacgatattaggtagtatagatatcattatgggagaagttgatcgttgaaatgataataaacagggtacatgtagaagctatcaattctttttcgaacttggaattattaaaagaagtctatggactgatatggattctacccattttgaccctcttactgggaatcacaatagaagtactcataattgtgtggttagaaagagaaatatccgcatcgatacaacaacgtattggtcctgaatatgctggccccctgggactgcttcaagctatagcagatggaactaagctactttttaaagaggatatcttgccatcccgaggggatattcccttatttagcattggaccgtctatagcagtcatatcaattttattaagttttttagttattcctttgggatatcgctttgttttagcggatcttagtattggtgtttttttatggattgccatttcaagtattgctcctattggtcttcttatggcaggatatagctcaaataataaatattctttttcaggtggtctacgagctgccgctcaatctattagttatgaaatcccattaactttttgtgtactagcaatatctctacgtgcgattcgttaaaataggatctttttcctctgaaattcattgaatatttatcctccttttcttattctatattcaggttagtaagttaaactagatagctatatgagtgaaacaaaactgcttattaatttgtagtaaaaagaaaaaatctcatttcctatgtacaagaaaaaatggaagtaaacataagcggtgtaaattctttaccccaaggttgagatttttttattagtcatcatatcttgaagcgggcaataataagggattcctgatatagaaagttgtaatcataagggaatccatcaaaagttagtgaggtattagaaacactaaagtacataaaggattagtaatgagggaatctaaagcattagatatttttcctcataaaaggaatcataataaggacttgaaattggtggaaatgagcaagtagtactttcttcggattccaatccagagtatgttcccattcacttgttaaggaaatggctatcaagaacgaattaaccctttattccttttttctttttaaatactcctcggggaaagaagaataggacaaaagatatggaatgcaataaaaaaagatctttatttattctttccatcgtttatccatattcatacagaattcttcatgaactaatacccaactcttttcgtttattaattgttataacgagtgttttattccaagattaagttattgctgaacaaagaaaaagtaccattatattataaaggatgagatgaattccgaaagcgttttttattattctagcagatagaattcctttggtctaatttaggacgttgaaatcgattttatcttagataattctaactacgcccaagaagataataacgaaatgaaacagtactttcctttttttctgatcatagaggagccgtatgaaactaaggtttcatgtacggttttggaatagcggtgggaactgtgatgttatcgtcgactatgattatccaacagttcaagtacagttgatatagttaaagcgcagtcaaaatatggtttttttggatggaatctttggcgtcagcctataggttttctgatttttctaatttcttctttggcggaatgtgaaagattaccctttgatttaccagaagcggaggacgaattagtagcaggttatcaaaccgaatattctgctatcaaatatggtttattttatcttgtttcttacctaaatttattagtttcctctttatttgtaacagttctctgcttaggcgggtggaatttgtctattccctatatatccttttttggatttttccaaatgaataaaatggttggaattttagaaatgacaatgagtatctttattacattaactaaagcttatttatttctcttcatttctatcacaataagatggactttacccaggatgagaatggattagttattaaatcttggatggaaatttcttttacctatttccctgggcaatctcttattaacaacttcttcccaacttgtttcactataaaataagataatacaataacagtaagaatattttcaacacaaaagttctctcaaacaagagaaagaaacatacc
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| CDS seq | ttattaaaagaagtctatggactgatatggattctacccattttgaccctcttactgggaatcacaatagaagtactcataattgtgtggttagaaagagaaatatccgcatcgatacaacaacgtattggtcctgaatatgctggccccctgggactgcttcaagctatagcagatggaactaagctactttttaaagaggatatcttgccatcccgaggggatattcccttatttagcattggaccgtctatagcagtcatatcaattttattaagttttttagttattcctttgggatatcgctttgttttagcggatcttagtattggtgtttttttatggattgccatttcaagtattgctcctattggtcttcttatggcaggatatagctcaaataataaatattctttttcaggtggtctacgagctgccgctcaatctattagttatgaaatcccattaactttttgtgtactagcaatatctctacgtgcgatt
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| Protein seq | LLKEVYGLIWILPILTLLLGITIEVLIIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLRAI |
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| Function | NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [UniProtKB/Swiss-Prot:P12124] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015191 | OsLima_02g0015191.02 | Chr02 | 13877366 | 13879580 | + | IsoSeq | ||
| CDS seq | atggaatgcaataaaaaaagatctttatttattctttccatcgtttatccatattcatacagaattcttcatgaactaatacccaactcttttcgtttattaattgttataacgagtgttttattccaa |
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| Protein seq | MECNKKRSLFILSIVYPYSYRILHELIPNSFRLLIVITSVLFQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015191 | OsLima_02g0015191.03 | Chr02 | 13877485 | 13878567 | + | IsoSeq | ||
| CDS seq | ttattaaaagaagtctatggactgatatggattctacccattttgaccctcttactgggaatcacaatagaagtactcataattgtgtggttagaaagagaaatatccgcatcgatacaacaacgtattggtcctgaatatgctggccccctgggactgcttcaagctatagcagatggaactaagctactttttaaagaggatatcttgccatcccgaggggatattcccttatttagcattggaccgtctatagcagtcatatcaattttattaagttttttagttattcctttgggatatcgctttgttttagcggatcttagtattggtgtttttttatggattgccatttcaagtattgctcctattggtcttcttatggcaggatatagctcaaataataaatattctttttcaggtggtctacgagctgccgctcaatctattagttatgaaatcccattaactttttgtgtactagcaatatctctacgtgcgatt
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| Protein seq | LLKEVYGLIWILPILTLLLGITIEVLIIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLRAI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015191 | OsLima_02g0015191.01 | Chr02 | 13877301 | 13878118 | + | IsoSeq | ||
| CDS seq | atggaactaagctactttttaaagaggatatcttgccatcccgaggggatattcccttatttagcattggaccgt |
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| Protein seq | MELSYFLKRISCHPEGIFPYLALDR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015191 | OsLima_02g0015191.04 | Chr02 | 13878089 | 13879505 | + | IsoSeq | ||
| CDS seq | atggaatgcaataaaaaaagatctttatttattctttccatcgtttatccatattcatacagaattcttcatgaactaatacccaactcttttcgtttattaattgttataacgagtgttttattccaa |
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| Protein seq | MECNKKRSLFILSIVYPYSYRILHELIPNSFRLLIVITSVLFQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015191 | OsLima_02g0015191.05 | Chr02 | 13878165 | 13879556 | + | IsoSeq | ||
| CDS seq | atgaaactaaggtttcatgtacggttttggaatagcggtgggaactgtgatgttatcgtcgactatgattatccaacagttcaagtacagttg |
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| Protein seq | MKLRFHVRFWNSGGNCDVIVDYDYPTVQVQL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 43.328491 | 0.392809 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21396 | RBH | 40.554802 | 39.038059 | 10.751688 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0014930 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015110 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015010 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0014870 | RBH | 5.150149 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0215200 | RBH | 184.132141 | 23.1841435 | 49.12969 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024460 | RBH | 24.760839 | 1.161248 | 7.735779 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009630 | RBH | 1245.698364 | 89.713905 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009640 | RBH | 17.660044 | 1.086014 | 10.170137 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002581 | RBH | 34.269939 | 17.896538 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026000 | SBH | 50.009655 | 8.212713 | 50.160526 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0014920 | RBH | 134.723175 | 45.555649 | 142.943100 |
