Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0017780 | OGI:11010520 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:20949963-20953487 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | attgcgagaaggatagtcttcctcatggcaggagcaagagcaacagcattgtcctgcttctcactgttgttgttctgttcctatgccctggtctctccagggagcagcgatgccactgttgtcgatgagctcgcgctcctctccttcaagtccatgctgtcaggcccatccgatggtttgctcgcgtcatggaacacctcaatccactactgcgattggacaggggttgtctgcagtggccgtcggcaacctgaaagggttgtcgcgctgctgatgaactcctccagcctttcgggccgcatctcgccgttcttgggtaacctgtcctttctcaacaggttggaccttcacggcaacggatttattgggcagataccatcggagctcggccatctcagcaggcttcgggtgctgaatctgagcacaaattctctggatggaagcattcctgtggctctgggaaggtgcaccaatctcacggtgcttgacctcagcagtaacaaactccgaggtaagataccgactgaggtaggagccttggaaaatcttgttgatctaagacttcacaagaatggtttgtcaggagagatccctttgcacatatcaaatttgctatcggtggagtacctgtatttgagagataactggttctctggtgagataccacctgctctgggcaatctcaccaagctgcggtatcttgaccttgcgaccaacaagctatcaggatctattccttcatctctgggtcagttgtctagcttatctttgttcaacttaggccataacaacttaagtggattgatccccaattctatttggaacatctcctctctgacagtgctctctgtccaagtaaatatgctgagtggaacaataccgccaaatgcgttcgatagtctgcctcgtctccagagcatttcaatggataccaacaagtttgaaggctatatccctgcatcacttgctaatgcttccaatctgtcctttgttcaactcagtggtaactctttacgcggtattgttcctcccaagattggaaggttaagcaatatcaattggctgcagctttcgaacaatttgcttcaagctaaggagacgaaagattggaacttcatatcggcattgacaaattgctcccagttagaaatgttggacttgggtgctaacaagtttagtggagttcttcctgattcactctccaaccattccagttcactatggtttctctccctttcagtcaatgagattacagggagcatacccaaagatataggtaacctcatcagtttacaacagattgatctcagtaataactatttcataggaactcttccatcttccttgagtaggctcaacaaattgcaagctctctctgtttatagcaacaatatcagtggattagtcccatcaaccattggaaatcttacagaaatgaattatttggacctcgactccaatgcttttagtggcagtataccaagcacactcggaaacatgacaaacttgttggcactaggcctttccgacaataacttcataggccgaattccaatttgaatacttagcatccctacgctctccgatattttggagctatccagtaataacttggagggaccaataccacaagaaattgggaatcttaaaaatcttgtggagttccatgcatattccaacagattatcaggtgaaatccctagcacccttggtgaatgcaaacttctccggaatctctatctccaaaacaatgatttaactggtagcattccctgactcctgagtcaattgaaaggtctagaaaatcttgacctctcaagcaacaatttatccggtcaggttcccaagttctttggaaacattaccatgctctattatctaaatctttcattcaatagctttgttggagatattccaaactttggtgtttttgcaaatgctactgccatatcaatccaaggcaatgacaaactttgtggtggcatacctgatctacatttgcctccatgttcttcagaatcgggaaagagaagacataaatttccactgatccctgttgttgtttctctcgctgcaacgattttcatcctttcattgatctctgcatttctgttctggcgcaaacctatgagcaaacttccttcagcaacatctatgcaaggttacccattgatctcttaccaacaaatagtgagagcaacagatgatttctcgacaaccaatttgttgggttctggaacatttgggactgtgttcaaaggaaatataagtgctcaagatggtgaaaatacaagtcttgttgctataaaggtcctaaaacttcaaactcctggggcactcaagagtttctcagccgaatgcgaagcactgcgagacttacggcaccgaaatctcgtgaagataattacagtctgctcaagtattgataacagagggaatgacttcaaagcaattgtacttgatttcatgtctaatggtagtttagaaggctggctgcatcctgacaaaaatgaccaaacagaccagaggtacttaagtctccttgagagagtttgtgtactgcttgatgtggcttatgggttggattaccttcactgccatggcccaacacctgttgtgcattgtgatcttaagtcaagtaatgtgctcttggatgctgatatggtagctcatgttggagactttggcctcgcaaaaattcttgttgagggaagctcaatgttccaacagtcaacaagctcaatgggatttagagggacaattggttatgctgccccaggttagtgttatatgtttccttacctgtttgcaccccaatcaccttttcaaaattcagaagaaaatgtttaatttgatgcaaccttttgttttccgatttctagcttatcctacatttctgttctgtatttccaaatgtttgattcaacagagtatggtgctggaaatatggtatcaacaaatggagatatctacagctatggaattctagtgttggaaacagttaccgggaagaagcctgctggtagtgaattcagacaaggattaagccttcgcgaatacgtgaagtctggtctagaagacgaagtgatggaaattgttgacatgcgtctatgtatggaccttacgaacggcattccaactgggaatgatgccacatacaaaagaaaggttgaatgcatcgttttacttcttaaacttggaatgtcctgctctcaggaattaccctcaagcagatcgtcaaccggagatattgtgaaggagcttctggccatcaaagaatctctctcaggcgacgagcacaagatgtgatgatggaagatatatatgccaaatgtcatgctgcgatgattcatgtatcgatgatatatatgctgttggatgacattaggctcctttctcaagtgttccatgaaatgttttgaacatcgaatgatcactgaaattgtatctttctgctaatctgtgaacctgagagaattatttcctgtattttagtcagagctcaatactagttcataagcctcc
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| CDS seq | atggcaggagcaagagcaacagcattgtcctgcttctcactgttgttgttctgttcctatgccctggtctctccagggagcagcgatgccactgttgtcgatgagctcgcgctcctctccttcaagtccatgctgtcaggcccatccgatggtttgctcgcgtcatggaacacctcaatccactactgcgattggacaggggttgtctgcagtggccgtcggcaacctgaaagggttgtcgcgctgctgatgaactcctccagcctttcgggccgcatctcgccgttcttgggtaacctgtcctttctcaacaggttggaccttcacggcaacggatttattgggcagataccatcggagctcggccatctcagcaggcttcgggtgctgaatctgagcacaaattctctggatggaagcattcctgtggctctgggaaggtgcaccaatctcacggtgcttgacctcagcagtaacaaactccgaggtaagataccgactgaggtaggagccttggaaaatcttgttgatctaagacttcacaagaatggtttgtcaggagagatccctttgcacatatcaaatttgctatcggtggagtacctgtatttgagagataactggttctctggtgagataccacctgctctgggcaatctcaccaagctgcggtatcttgaccttgcgaccaacaagctatcaggatctattccttcatctctgggtcagttgtctagcttatctttgttcaacttaggccataacaacttaagtggattgatccccaattctatttggaacatctcctctctgacagtgctctctgtccaagtaaatatgctgagtggaacaataccgccaaatgcgttcgatagtctgcctcgtctccagagcatttcaatggataccaacaagtttgaaggctatatccctgcatcacttgctaatgcttccaatctgtcctttgttcaactcagtggtaactctttacgcggtattgttcctcccaagattggaaggttaagcaatatcaattggctgcagctttcgaacaatttgcttcaagctaaggagacgaaagattggaacttcatatcggcattgacaaattgctcccagttagaaatgttggacttgggtgctaacaagtttagtggagttcttcctgattcactctccaaccattccagttcactatggtttctctccctttcagtcaatgagattacagggagcatacccaaagatataggtaacctcatcagtttacaacagattgatctcagtaataactatttcataggaactcttccatcttccttgagtaggctcaacaaattgcaagctctctctgtttatagcaacaatatcagtggattagtcccatcaaccattggaaatcttacagaaatgaattatttggacctcgactccaatgcttttagtggcagtataccaagcacactcggaaacatgacaaacttcatccctacgctctccgatattttggagctatccagtaataacttggagggaccaataccacaagaaattgggaatcttaaaaatcttgtggagttccatgcatattccaacagattatcaggtgaaatccctagcacccttggtgaatgcaaacttctccggaatctctatctccaaaacaatgatttaactggtctagaaaatcttgacctctcaagcaacaatttatccggtcaggttcccaagttctttggaaacattaccatgctctattatctaaatctttcattcaatagctttgttggagatattccaaactttggtgtttttgcaaatgctactgccatatcaatccaaggcaatgacaaactttgtggtggcatacctgatctacatttgcctccatgttcttcagaatcgggaaagagaagacataaatttccactgatccctgttgttgtttctctcgctgcaacgattttcatcctttcattgatctctgcatttctgttctggcgcaaacctatgagcaaacttccttcagcaacatctatgcaaggttacccattgatctcttaccaacaaatagtgagagcaacagatgatttctcgacaaccaatttgttgggttctggaacatttgggactgtgttcaaaggaaatataagtgctcaagatggtgaaaatacaagtcttgttgctataaaggtcctaaaacttcaaactcctggggcactcaagagtttctcagccgaatgcgaagcactgcgagacttacggcaccgaaatctcgtgaagataattacagtctgctcaagtattgataacagagggaatgacttcaaagcaattgtacttgatttcatgtctaatggtagtttagaaggctggctgcatcctgacaaaaatgaccaaacagaccagaggtacttaagtctccttgagagagtttgtgtactgcttgatgtggcttatgggttggattaccttcactgccatggcccaacacctgttgtgcattgtgatcttaagtcaagtaatgtgctcttggatgctgatatggtagctcatgttggagactttggcctcgcaaaaattcttgttgagggaagctcaatgttccaacagtcaacaagctcaatgggatttagagggacaattggttatgctgccccagagtatggtgctggaaatatggtatcaacaaatggagatatctacagctatggaattctagtgttggaaacagttaccgggaagaagcctgctggtagtgaattcagacaaggattaagccttcgcgaatacgtgaagtctggtctagaagacgaagtgatggaaattgttgacatgcgtctatgtatggaccttacgaacggcattccaactgggaatgatgccacatacaaaagaaaggttgaatgcatcgttttacttcttaaacttggaatgtcctgctctcaggaattaccctcaagcagatcgtcaaccggagatattgtgaaggagcttctggccatcaaagaatctctctcaggcgacgagcacaagatgtga
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| Protein seq | MAGARATALSCFSLLLFCSYALVSPGSSDATVVDELALLSFKSMLSGPSDGLLASWNTSIHYCDWTGVVCSGRRQPERVVALLMNSSSLSGRISPFLGNLSFLNRLDLHGNGFIGQIPSELGHLSRLRVLNLSTNSLDGSIPVALGRCTNLTVLDLSSNKLRGKIPTEVGALENLVDLRLHKNGLSGEIPLHISNLLSVEYLYLRDNWFSGEIPPALGNLTKLRYLDLATNKLSGSIPSSLGQLSSLSLFNLGHNNLSGLIPNSIWNISSLTVLSVQVNMLSGTIPPNAFDSLPRLQSISMDTNKFEGYIPASLANASNLSFVQLSGNSLRGIVPPKIGRLSNINWLQLSNNLLQAKETKDWNFISALTNCSQLEMLDLGANKFSGVLPDSLSNHSSSLWFLSLSVNEITGSIPKDIGNLISLQQIDLSNNYFIGTLPSSLSRLNKLQALSVYSNNISGLVPSTIGNLTEMNYLDLDSNAFSGSIPSTLGNMTNFIPTLSDILELSSNNLEGPIPQEIGNLKNLVEFHAYSNRLSGEIPSTLGECKLLRNLYLQNNDLTGLENLDLSSNNLSGQVPKFFGNITMLYYLNLSFNSFVGDIPNFGVFANATAISIQGNDKLCGGIPDLHLPPCSSESGKRRHKFPLIPVVVSLAATIFILSLISAFLFWRKPMSKLPSATSMQGYPLISYQQIVRATDDFSTTNLLGSGTFGTVFKGNISAQDGENTSLVAIKVLKLQTPGALKSFSAECEALRDLRHRNLVKIITVCSSIDNRGNDFKAIVLDFMSNGSLEGWLHPDKNDQTDQRYLSLLERVCVLLDVAYGLDYLHCHGPTPVVHCDLKSSNVLLDADMVAHVGDFGLAKILVEGSSMFQQSTSSMGFRGTIGYAAPEYGAGNMVSTNGDIYSYGILVLETVTGKKPAGSEFRQGLSLREYVKSGLEDEVMEIVDMRLCMDLTNGIPTGNDATYKRKVECIVLLLKLGMSCSQELPSSRSSTGDIVKELLAIKESLSGDEHKM |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0017780 | OsCMeo_11g0017780.01 | Chr11 | 20949987 | 20953271 | + | NAM | ||
| CDS seq | atggcaggagcaagagcaacagcattgtcctgcttctcactgttgttgttctgttcctatgccctggtctctccagggagcagcgatgccactgttgtcgatgagctcgcgctcctctccttcaagtccatgctgtcaggcccatccgatggtttgctcgcgtcatggaacacctcaatccactactgcgattggacaggggttgtctgcagtggccgtcggcaacctgaaagggttgtcgcgctgctgatgaactcctccagcctttcgggccgcatctcgccgttcttgggtaacctgtcctttctcaacaggttggaccttcacggcaacggatttattgggcagataccatcggagctcggccatctcagcaggcttcgggtgctgaatctgagcacaaattctctggatggaagcattcctgtggctctgggaaggtgcaccaatctcacggtgcttgacctcagcagtaacaaactccgaggtaagataccgactgaggtaggagccttggaaaatcttgttgatctaagacttcacaagaatggtttgtcaggagagatccctttgcacatatcaaatttgctatcggtggagtacctgtatttgagagataactggttctctggtgagataccacctgctctgggcaatctcaccaagctgcggtatcttgaccttgcgaccaacaagctatcaggatctattccttcatctctgggtcagttgtctagcttatctttgttcaacttaggccataacaacttaagtggattgatccccaattctatttggaacatctcctctctgacagtgctctctgtccaagtaaatatgctgagtggaacaataccgccaaatgcgttcgatagtctgcctcgtctccagagcatttcaatggataccaacaagtttgaaggctatatccctgcatcacttgctaatgcttccaatctgtcctttgttcaactcagtggtaactctttacgcggtattgttcctcccaagattggaaggttaagcaatatcaattggctgcagctttcgaacaatttgcttcaagctaaggagacgaaagattggaacttcatatcggcattgacaaattgctcccagttagaaatgttggacttgggtgctaacaagtttagtggagttcttcctgattcactctccaaccattccagttcactatggtttctctccctttcagtcaatgagattacagggagcatacccaaagatataggtaacctcatcagtttacaacagattgatctcagtaataactatttcataggaactcttccatcttccttgagtaggctcaacaaattgcaagctctctctgtttatagcaacaatatcagtggattagtcccatcaaccattggaaatcttacagaaatgaattatttggacctcgactccaatgcttttagtggcagtataccaagcacactcggaaacatgacaaacttcatccctacgctctccgatattttggagctatccagtaataacttggagggaccaataccacaagaaattgggaatcttaaaaatcttgtggagttccatgcatattccaacagattatcaggtgaaatccctagcacccttggtgaatgcaaacttctccggaatctctatctccaaaacaatgatttaactggtctagaaaatcttgacctctcaagcaacaatttatccggtcaggttcccaagttctttggaaacattaccatgctctattatctaaatctttcattcaatagctttgttggagatattccaaactttggtgtttttgcaaatgctactgccatatcaatccaaggcaatgacaaactttgtggtggcatacctgatctacatttgcctccatgttcttcagaatcgggaaagagaagacataaatttccactgatccctgttgttgtttctctcgctgcaacgattttcatcctttcattgatctctgcatttctgttctggcgcaaacctatgagcaaacttccttcagcaacatctatgcaaggttacccattgatctcttaccaacaaatagtgagagcaacagatgatttctcgacaaccaatttgttgggttctggaacatttgggactgtgttcaaaggaaatataagtgctcaagatggtgaaaatacaagtcttgttgctataaaggtcctaaaacttcaaactcctggggcactcaagagtttctcagccgaatgcgaagcactgcgagacttacggcaccgaaatctcgtgaagataattacagtctgctcaagtattgataacagagggaatgacttcaaagcaattgtacttgatttcatgtctaatggtagtttagaaggctggctgcatcctgacaaaaatgaccaaacagaccagaggtacttaagtctccttgagagagtttgtgtactgcttgatgtggcttatgggttggattaccttcactgccatggcccaacacctgttgtgcattgtgatcttaagtcaagtaatgtgctcttggatgctgatatggtagctcatgttggagactttggcctcgcaaaaattcttgttgagggaagctcaatgttccaacagtcaacaagctcaatgggatttagagggacaattggttatgctgccccagagtatggtgctggaaatatggtatcaacaaatggagatatctacagctatggaattctagtgttggaaacagttaccgggaagaagcctgctggtagtgaattcagacaaggattaagccttcgcgaatacgtgaagtctggtctagaagacgaagtgatggaaattgttgacatgcgtctatgtatggaccttacgaacggcattccaactgggaatgatgccacatacaaaagaaaggttgaatgcatcgttttacttcttaaacttggaatgtcctgctctcaggaattaccctcaagcagatcgtcaaccggagatattgtgaaggagcttctggccatcaaagaatctctctcaggcgacgagcacaagatgtga
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| Protein seq | MAGARATALSCFSLLLFCSYALVSPGSSDATVVDELALLSFKSMLSGPSDGLLASWNTSIHYCDWTGVVCSGRRQPERVVALLMNSSSLSGRISPFLGNLSFLNRLDLHGNGFIGQIPSELGHLSRLRVLNLSTNSLDGSIPVALGRCTNLTVLDLSSNKLRGKIPTEVGALENLVDLRLHKNGLSGEIPLHISNLLSVEYLYLRDNWFSGEIPPALGNLTKLRYLDLATNKLSGSIPSSLGQLSSLSLFNLGHNNLSGLIPNSIWNISSLTVLSVQVNMLSGTIPPNAFDSLPRLQSISMDTNKFEGYIPASLANASNLSFVQLSGNSLRGIVPPKIGRLSNINWLQLSNNLLQAKETKDWNFISALTNCSQLEMLDLGANKFSGVLPDSLSNHSSSLWFLSLSVNEITGSIPKDIGNLISLQQIDLSNNYFIGTLPSSLSRLNKLQALSVYSNNISGLVPSTIGNLTEMNYLDLDSNAFSGSIPSTLGNMTNFIPTLSDILELSSNNLEGPIPQEIGNLKNLVEFHAYSNRLSGEIPSTLGECKLLRNLYLQNNDLTGLENLDLSSNNLSGQVPKFFGNITMLYYLNLSFNSFVGDIPNFGVFANATAISIQGNDKLCGGIPDLHLPPCSSESGKRRHKFPLIPVVVSLAATIFILSLISAFLFWRKPMSKLPSATSMQGYPLISYQQIVRATDDFSTTNLLGSGTFGTVFKGNISAQDGENTSLVAIKVLKLQTPGALKSFSAECEALRDLRHRNLVKIITVCSSIDNRGNDFKAIVLDFMSNGSLEGWLHPDKNDQTDQRYLSLLERVCVLLDVAYGLDYLHCHGPTPVVHCDLKSSNVLLDADMVAHVGDFGLAKILVEGSSMFQQSTSSMGFRGTIGYAAPEYGAGNMVSTNGDIYSYGILVLETVTGKKPAGSEFRQGLSLREYVKSGLEDEVMEIVDMRLCMDLTNGIPTGNDATYKRKVECIVLLLKLGMSCSQELPSSRSSTGDIVKELLAIKESLSGDEHKM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0017780 | OsCMeo_11g0017780.02 | Chr11 | 20949963 | 20953487 | + | IsoSeq | ||
| CDS seq | atgccctggtctctccagggagcagcgatgccactgttgtcgatgagctcgcgctcctctccttcaagtccatgctgtcaggcccatccgatggtttgctcgcgtcatggaacacctcaatccactactgcgattggacaggggttgtctgcagtggccgtcggcaacctgaaagggttgtcgcgc |
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| Protein seq | MPWSLQGAAMPLLSMSSRSSPSSPCCQAHPMVCSRHGTPQSTTAIGQGLSAVAVGNLKGLSR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.748704 | 3.751313 | 5.803600 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0570000 | SBH | 1.042240 | 0.694925 | 1.137008 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36200 | SBH | 0.724667 | 0.490703 | 0.265260 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0570000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017830 | SBH | 0.128877 | 6.788608 | 1.696541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018020 | SBH | 0.0 | 0.000000 | 0.588316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017770 | SBH | 0.164332 | 9.540369 | 4.595458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017450 | RBH | 0.0 | 0.047769 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017870 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0332300 | RBH | 0.364913 | 3.632384 | 1.859963 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018270 | SBH | 0.040696 | 0.0 | 0.079613 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0344600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018160 | RBH | 0.049340 | 0.036304 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018290 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017710 | SBH | 0.429796 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017610 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017740 | SBH | 0.120969 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017720 | SBH | 0.042523 | 0.0 | 0.112282 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018020 | SBH | 0.0 | 0.0 | 1.174825 |
