Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0013270 | OGI:01077750 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:16207685-16213178 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggtgggttttcttctccaacgaaactctatcccctctcttcttctctctgcactgctcctcccctcaggcctaagccgggcaccaatctgaaggtaaggcaccatggtgatttgctggccagccgctccgcgtgtccacacctctcccaatctgtgttggctgccatcctctgcacctacgcctccccgccgaccaacaaccctgagcaggcgagctcccccacggccgctgagggccacgcggtgacgcctcgtgcccggtggccgtgcgctgcagcgctagtgcggttttgcctccccagcgcctacgtctacaccgcgccgcgcagcccacggccctgccgccatgctcctgcatctccgcctcccttcctagttcctacacgtttcactgcctagctgtgttgccaaatcacactcgggcctaattccatttcagcactatactacattactaatttgatatatatgttctctgtatgcaggttttggatcagatgcagtgatcaatcctaggtgacagagcctattaggctagaacagaccagtaagcaatccaatgtgtgatctttttatattcctctgtcctggatgttgcaatctagccgaataaaccacttttgcttttgatcgttcactgtccatctatgcattttatctccttgcgtcaaattaaattttgttctttctatcaattacttgtttcaaattgttggccaattaaaatggacaaaggaattagtgactggcaaataaatccaaattggaattggtaaatttattgttcaatttttaatgtgttgacacctctatttgaaaattgttcattagctaacagaggtatctaataacctgtaggctagcacctttctcatcaatacaaaccatagtggtacttttttggacaacagtagagtaaaatgcctaaagttttagccaattctgaaattattcttctagagcagtagagaaaagtggtactcagactgcaatacataggtttatgctatttttgttttggtgcagcagatatggcaaggagtagaaggcggtgcattgttcaaagccatgaggaatatttgtcagaggaacacattgcagaagaaaatgcccctaaacagcttgccacaccatctgaacaagaaacaatatgtagtgatgttcatgagggtaatgaagatactgatgacgatgttggagaagccaatgaagatactgatgacgatgctagtatgaatgctggagaaggcaatgaagaatctgatgatgatgttgaaattaatgttcgaggtaaatactaaatcttgatggtaagaaataatgaaattattcttcttatcctggactgttgagcatcacttttatctttgcaatttaacattgaacagatgaaaatggaacaattgaaacacgtgggaagacaaaactgaaagatatttggaaccttccgaaagggcttaggattgtggttcagtgcaatgatctcaaccaggcagtaggagatgaagctggaattttgtctaaatttcttggaatggtagctaggaatggtactttgtgtagcttaagctacacagactggagatttctaataggaaagagagagagaaaaacaaatggattaaaagttaaaaaggacattcttaagcaagtaaaggtaaacccttcccacatctacacttttgttaacttcctgtattattgtacagcttcctgtattattgtacagtgcatatccctagatgagtttctttgttggtatgcagatgagattcctttatgctcctcggatggaagaattcatattaaaaacaattagagagagatggaggggacataaagcaaaactaaaagaaaagtattttgatgtgaataagagcaaagaagctaattgcaacaatgtcccagctgatgtgcttcctgaccagtggattgctcttatcaatcattggatgagcgagaaatcgaaggtatataggcgttgcatattcactactgtgatgttcttacaaatgagactatcaattgaactaaacaatgttgtgctcatgtatattcgctaactcttatgatacgagaacagaaaataagcaagcagaacaaggaaaattgtcgaaagaagaaggcattacacactgcagggacaaagagttttgctcgtacaagagaagagatggtaaaacatgtcctggatcgtccaatttccattccaatcctatatagactgtgtaggatttaatgatttgttcacatgttccatagagacaaaaagatcctgcaaagaagaatcctcacagagctgttgtgtacattcacacacacaagcgcaaaactggcaagaatctaaatgggcatgtggtatactatcaaatctaaaccatagataatttaagtttcaacatttttcatatgttctattcatattgttcctgtgtttaggataatttgaagaaacttgtagctgaacaaccagctttagcagacactagtgaaggaaggactgcttggaaaggagatgcattgaaccaaatccttggagatgacaagcctgggcatgtgcatggtcttggactagttccaaagcctaaacaagttcttgatgtgccaacttcccgacgcttaaagaatataaatgttactagactggatgataactggagtgaagatgttgtggctgctagactgcagttggaaaagatcaaaaatcatgtccagaatcatgatgctgagcttttggaattgaaagtgaagacaaacaagttggaaaaagaacaaatgaatcaggtgagaatttgaagaagttgtcctaaaatgtttgtaactcactgaatgtatctaacctacctagttggtgttacagggaggtttagatcgagtatctacaaacaaagaagctagtgttgatggtcctattttgaaaaggagggtatgtatctctatggaagattaccctatatagtttggaaaaaatatggtctaaatctccttttcttttctactgttgacagagggtgtattctgaccgtcccttgcaagaaatttgtattgctgaggaggaaaacgatatggttcaggaagaaaacaatatgatggtaatatactggaattgcactattgtatagctaggaatagttgcactattttgtaattgagaatatatggtccctttcaaaacagaatacatgctccctttcaaaacagaatatacagagccatgttccaaatgaggatttgcaaccaaaaaccaagcaatgtgttgaagacaaggtacttgtcttaccaactatattattattctgaaccccccatgattacttaacattacatgattttgtactgtttgtagctatggttgtttactatagttcataatcttatgcattttattttagaacaaacaaaattgggaacaacatgactatgggaaacaaaggaaggttatttctgcacaggttagttttcattttttttattaattgcaactcaccatgtttgcgctattctaatgcaacaattgatgaaacaatccatgtcttagagttttcgtaatggttttttgccttcttctatagaaaaaaaaaactaacaaggaaaaccatgtgatgaatgcacgaaaagttgttgaagtatccaaggttattttttattcatcatgtctataaatttctgtttttttacaaaatatagcatgtatgattgactagtagttttgattacattgcagaataaagaaagagaaaaaaatgctcagagccatgttagactaggccaaaaccaaccaactgctactcctaaggttagtattgtttattctattatattttgcaagggattgactttgtgcacagatttatgttttgctttagcacttcaacatttattttgactgtatgcagttaagttgcagactcatgatcgaaacaattcttatttttacagaaaagacagtgcagcacaacaaactttatcactgacaattcaatggaggtaaaccatattaaagttttactgtacactgcttcataaatatatggtatgaatctccatttggtttctactattgttagagagtgtgtgttaacggtcccttgcaagaaaattctatggttgagcatcaaaacaatatgattgagcatgaaaacaatgctatggtaaagtataaaaattacactgtttttagctgggaatagttgcactattttctaactagtaatattgtctctctttcacatcaggacacaaatatccatgttcaggacaaggttttgcaactaccaaccaagcaatctactatagataaggtcattctcttcctatttgttatgtcgaactcaccacatagcattatatgatctcgatattgtttgcaactgtcaacgtttattgtagctgttcattacaatcttatgtcttattttattacagagcaatcaaacttatggccaaaatcaccttgagaaacagaggaagattatttgtgtgaaggctagtcttcacttttttattgattggaactcacagtgtttaattataaaaataactagattattgtagtttgtgccaatattttgatattccatgcagaataaaggaaacatgaaccagaatgatcacatgcaacaagggaagaataattctaatgcttataaggtaaattttcacttctgaagccacctaatataaagataagctatagaattctatttggtataatatgtttgtactttatagttaaattattgaatcttgatccaaataactttgtacagaaacaacagtgcaacatagtggacattatggatgccaattcattggaggtaaaacttttaatatgatgttcttttccatacttaattgctctttatatagagataatgctgatggacatatatttatgcaccagattggaactaatgtattcttgaaaagctggaaaaatcgaaataagaatgtggctgttgcttcaattgtaagctgtgatccaacacgcaaagttgcaggtgttgagctaggaactgaatacttgatggtgcatgttcattttccattggcaaaatatgaagaattgatcaggccatacaaaggctacaaaattattggcaatgtcgtaggacttgatattgtgtggccagcaatttttgtacggtgctatttctcaatttctttagatgtggtcttctttcttccaatgttgtatcaatggttgttttttttttctgttacaggttgacaagataaatggatcatgatctggggcaatatggttactgcaaggtggacaactatgtcatctaaagatcccttgtgaatatgatgatgactgtaatgtggaagatggtgacaatgatagtggcaacttcagttgcatgtttttttttctatagtttagattacatttgtgcatgatgttctgaacaaaatttaatgtcatgacttatgaggatgattttccatgtaatacaaaaaattttctttaattacaattagttttatg
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| CDS seq | gcgagctcccccacggccgctgagggccacgcggtgacgcctcgtgcccggtggccgtgcgctgcagcgctagtgcggttttgcctccccagcgcctacgtctacaccgcgccgcgcagcccacggccctgccgccatgctcctgcatctccgcctcccttcctagttcctacacgttttggatcagatgcagtgatcaatcctagctggaaaaatcgaaataagaatgtggctgttgcttcaattgtaagctgtgatccaacacgcaaagttgcaggtgttgagctaggaactgaatacttgatggtgcatgttcattttccattggcaaaatatgaagaattgatcaggccatacaaaggctacaaaattattggcaatgtcgtaggacttgatattgtgtggccagcaatttttgttgacaagataaatggatcatga
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| Protein seq | ASSPTAAEGHAVTPRARWPCAAALVRFCLPSAYVYTAPRSPRPCRHAPASPPPFLVPTRFGSDAVINPSWKNRNKNVAVASIVSCDPTRKVAGVELGTEYLMVHVHFPLAKYEELIRPYKGYKIIGNVVGLDIVWPAIFVDKINGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0013270 | OsCMeo_08g0013270.01 | Chr08 | 16207895 | 16212933 | + | NAM | ||
| CDS seq | gcgagctcccccacggccgctgagggccacgcggtgacgcctcgtgcccggtggccgtgcgctgcagcgctagtgcggttttgcctccccagcgcctacgtctacaccgcgccgcgcagcccacggccctgccgccatgctcctgcatctccgcctcccttcctagttcctacacgttttggatcagatgcagtgatcaatcctagctggaaaaatcgaaataagaatgtggctgttgcttcaattgtaagctgtgatccaacacgcaaagttgcaggtgttgagctaggaactgaatacttgatggtgcatgttcattttccattggcaaaatatgaagaattgatcaggccatacaaaggctacaaaattattggcaatgtcgtaggacttgatattgtgtggccagcaatttttgttgacaagataaatggatcatga
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| Protein seq | ASSPTAAEGHAVTPRARWPCAAALVRFCLPSAYVYTAPRSPRPCRHAPASPPPFLVPTRFGSDAVINPSWKNRNKNVAVASIVSCDPTRKVAGVELGTEYLMVHVHFPLAKYEELIRPYKGYKIIGNVVGLDIVWPAIFVDKINGS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0013270 | OsCMeo_08g0013270.02 | Chr08 | 16207685 | 16213178 | + | IsoSeq | ||
| CDS seq | atgaggaatatttgtcagaggaacacattgcagaagaaaatgcccctaaacagcttgccacaccatctgaacaagaaacaatatgtagtgatgttcatgagggtaatgaagatactgatgacgatgttggagaagccaatgaagatactgatgacgatgcta |
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| Protein seq | MRNICQRNTLQKKMPLNSLPHHLNKKQYVVMFMRVMKILMTMLEKPMKILMTML |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr08 | 16207685 | 16208170 | + | OsCMeo_08g0013270.02 | OsCMeo_08g0013270.01,OsCMeo_08g0013270.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.266968 | 4.813106 | 22.449795 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28010 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013370 | RBH | 3.477286 | 17.315722 | 16.015589 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006770 | SBH | 0.000000 | 0.0 | 2.090800 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006650 | RBH | 5.853002 | 0.000000 | 17.162111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013580 | RBH | 2.241811 | 0.274552 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006810 | SBH | 31.654949 | 2.448279 | 57.095963 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006650 | SBH | 0.152408 | 0.000000 | 0.135807 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0281200 | RBH | 0.0246435 | 0 | 0.8189765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008580 | SBH | 1.528968 | 0.495998 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006650 | SBH | 0.968633 | 0.927839 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006730 | SBH | 17.451418 | 12.912572 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006810 | SBH | 6.590096 | 0.997123 | 3.234447 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012990 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022630 | RBH | 0.512635 | 4.929079 | 6.489412 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013150 | SBH | 0.0 | 0.0 | 0.000000 |
