Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0008580 | OGI:01077750 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:16549411-16552347 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacgaaactctatcccCTctcttcttctctctgcactgctcctcccctcaggcctaagccaggcaccaatctgaaggtaaggcaccatggtgatttgctggccagccgctccgcgtgtccacacctctcccaatctgtgttggcTGccatcctctgcacctacgcctccccgccgaccaacaaccctgagtaggcgagctcccccacggccgctgagggccacgcggcgacgcctcatgcccggtggctgtgcgctgcaccgctagtgcggttttgcctccccagcgcctacgtctacaccgcgcgcgcagcccacggccctgccgccatgctcctgcatctccgcctcccttcctagttcctacacgtttcactgctcagctgtgttgccaaatcacactcgggcctaattccatttcagcactatactacattactaatttgatatatatgttctctgtatgcaggttttggatcagatgcagtgatcaatcctaggtgacagagcctattaggctagaacagaccaataagcaatccaatgtgtgatctttttatattcctctgtcctggatgttgcaatctagccgaataaaccacttttgcTtttgatcgttcactgtccatctatgcaTtttatctccttgcgtcaaattaaattttgttctttctatcaattacttgtttcaaattgttggccaattaaaatggacaaaggaattagtgactggcaaataaatccaaattggaattagtaaatttattgttcaatttttaatgtgttgacacctctatttgaaaattgttcattagctaacagaggtatctaataacctgtaggctagcacctttctcatcaatacaaaccatagtggtacttttttggacaacagtagagtaaaatgcctaaagttttagccaattctgaaattattcttctagagcagtagagaaaagtggtactcagactgcaatacataggtttatgctaTttttgttttggtgcagcagatatggcaaggagtagaaggcggtgcattgttcaaagccatgaggaatatttgtcagaggaacacattgcagaagaaaatgcccctaaacagcttgccacaccatctgaagagaaacaatatgcagtgatgttcaagagggtaatgaagatactgatgacgatgttggagaagtcaatgaagatactgatgacgatgctagtatgaatgctggagaaggcaatgaagaatctgatgatgatgttaaaattaatgttcgaggtaaatactaaatcttgatggtaagaaataatgaaattattcttcttatcctggactgttgagcatcacttttatctttgcaatttaacattgaacagatgaaaatggaacaattgaaacacgtgggaagacaaaactgaaagatatttggaaccttccgaaaggtcttaggattgtggttcagtgcaatgatctcaatcaggcagtaggagatgaagctggaattttgtctaaatttcttggaatggtagctaggaatggtactttgtgtagcttaagctacacagactggagatttctaataggaaagagagagagaaaaaaaatgaattaaaagttaaaaaggacattcttaaacaaatatccatgttcaggacaaggttttgcaactaccaaccaagcaatctactgtagataaggtcattctcttcctatttgttatgtcgaactcactacatagcattatatgatctcaatattgtttgcaactgtcaacgtttattgtagctgttcattacaatcttatgtcttatcttattacacagcaatcaaacttatggccaaaatcaccttgagaaacagaggaagattatttgtgtgaaggctagtcttcacTtttttattgattggaactgacagtgtttgattataaaaataactagattattgtagtttgtgccaatattttgatattccgtgcagaataaaggaaacatgaaccagaatgatcacatgcaacaagggaagaataattctaatgcttataaggtaaattttcacttctggagccacctaatataaagataagctatagaattctatttggtataatatgtttgtactttatagttaaattattgaatcttgatccaaataactttgtacagaaacaacagtgcaacatagtggacattatggatgccaattcattggaggtaaaacttttaatatgatgttcttttccatacttaattgctctttatatagagataatgctgatggacatatatttatgcaccagattggaactaatgtattcttgaaaagctggaaaaatcgaaataagaatgtggttgttgcttcaattgtaagctgtgatccaacacgcaaagttgcaggtattgagctaggaaCtgaatacttgatggtgcatgttcattttccattggcaaaatatgaagaattgatcaggccatacaaaggctacaaaattattggcaatgtcgtacgacttgatattgcgtggccagcaatttttgtacggtgctatttctcaaattctttagatgtgatcttctttcttccaatactgtatcaatggttgTttttttttctgttacaggttgacaagataaatggatcatgatctggggcaatatggttactacaaggtggacaactgtcatctaaagatcccttgtgaatatgatgatgactgtaatgtggaagatggtggcaatgatagtggcaacttcagatgcatgtttttttttctatagtttagattacatttgtgcatgatgttctgaacaaaatttaatgtcatgacttatgaggatgattttccatgtaatacaaaaaattctctttaattactattagttttatgaatgacttagtttttctcatgtgtacatcatttgagtttatgggcctctaacccaac
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| CDS seq | atgcaccagattggaactaatgtattcttgaaaagctggaaaaatcgaaataagaatgtggttgttgcttcaattgtaagctgtgatccaacacgcaaagttgcaggtattgagctaggaaCtgaatacttgatggtgcatgttcattttccattggcaaaatatgaagaattgatcaggccatacaaaggctacaaaattattggcaatgtcgtacgacttgatattgcgtggccagcaatttttgttgacaagataaatggatcatga |
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| Protein seq | MHQIGTNVFLKSWKNRNKNVVVASIVSCDPTRKVAGIELGTEYLMVHVHFPLAKYEELIRPYKGYKIIGNVVRLDIAWPAIFVDKINGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0008580 | OsLima_04g0008580.01 | Chr04 | 16551694 | 16552347 | + | NAM | ||
| CDS seq | atgcaccagattggaactaatgtattcttgaaaagctggaaaaatcgaaataagaatgtggttgttgcttcaattgtaagctgtgatccaacacgcaaagttgcaggtattgagctaggaaCtgaatacttgatggtgcatgttcattttccattggcaaaatatgaagaattgatcaggccatacaaaggctacaaaattattggcaatgtcgtacgacttgatattgcgtggccagcaatttttgttgacaagataaatggatcatga
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| Protein seq | MHQIGTNVFLKSWKNRNKNVVVASIVSCDPTRKVAGIELGTEYLMVHVHFPLAKYEELIRPYKGYKIIGNVVRLDIAWPAIFVDKINGS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0008580 | OsLima_04g0008580.02 | Chr04 | 16549411 | 16552296 | + | IsoSeq | ||
| CDS seq | atggatcatgatctggggcaatatggttactacaaggtggacaactgtcatctaaagatcccttgtgaatatgatgatgactgtaatgtggaagatggtggcaatgatagtggcaacttcagatgcatgttttttttt |
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| Protein seq | MDHDLGQYGYYKVDNCHLKIPCEYDDDCNVEDGGNDSGNFRCMFFF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr04 | 16551799 | 16552024 | + | OsLima_04g0008580.01 | OsLima_04g0008580.02,OsLima_04g0008580.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.528968 | 0.495998 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0340800 | RBH | 5.174430 | 5.893974 | 1.033047 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g27250 | RBH | 4.610956 | 3.697212 | 0.224597 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0340800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008770 | RBH | 5.201477 | 7.930246 | 20.901375 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009420 | RBH | 0.256556 | 0.0 | 1.061764 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009200 | RBH | 6.511307 | 0.000000 | 18.923014 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008870 | RBH | 0.867406 | 0.070138 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009030 | RBH | 10.648417 | 3.396509 | 9.711478 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0254900 | RBH | 10.861024 | 10.055191 | 15.7131795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008150 | RBH | 1.303406 | 0.170754 | 1.803121 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0251400 | RBH | 9.54802 | 11.3478815 | 17.079435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006720 | RBH | 2.237546 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008430 | RBH | 2.456511 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008490 | RBH | 16.725252 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008800 | RBH | 1.283354 | 0.000000 | 0.581337 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009120 | RBH | 1.191648 | 1.392729 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022630 | RBH | 0.512635 | 4.929079 | 6.489412 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022680 | RBH | 0.0 | 0.0 | 0.0 |
