Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0006720 | OGI:05017370 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:6409431-6414596 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaacctgtaacagaaaaaaacaaccattgatacaacattggaagaaagaagaccacatctaaagaaattgagaaatagcaccgtataaaaattgctggccacgcaatatcaagttttacgacattgctaataattttgtagcctttgtatggcctgatcaattcttcatattttgccaatggaaaatgaacatgcaccatcaagtattcagttcctagctcaacacctgcaactttgcgtgttggatcacagcttacaattgaagcaacagccacattcttatttcgatttttccagcttttcaagaatacattagttccaatctggtgcataaatatatgtccatgagcattatctctacataaagagcaattaagtatggaaaagaacatcatattaaaagttttatctccaatgaattggcatccataatgttcactatgttgcactgttgtttatgtacaaagttatttggatcaagattcaataatttaactataaagtacaaacatattataccaaatagaattctatagcttatctttatattaggtggctccagaagtaaaaatttaccttataagcattagaattattcttcccttgttgcatgtgatcattctggttcatgtttcctttattctgcatggaatatcaaaatattggcacaaactacaataatctagttatttttataattaaacactgtgagttccaatcaataaaaaagtgaagactagccttcacacaaataatcttcctctgtttctcaaggtgattttggccataagtttgattgctctgtaataaaataagacataagattgtaatgaacagctacaataaacgttgacagttgcaaacaatatcgagatcatataatgctatgtagtgagttcgacataacaaataagaagaGaatgaccttatatatagtagattgcttggttggtagttgcaaaaccttgttctgaacatggatatttgtgtcctgatgtgaaagagagacaatattactagttagaaaatagtgcaactattcccagctaaaaacagtgtaatttttatactttactatagcattgttttcatgctcaatcatattgttttgatgctcaaccatagaattttcttgcaagggaccgttaacacacactctctaacaatagtagaaaccaaatggagattcataccatatatttatgaagcactgtacagtaaaactttaatatggtttacctccattgaattgtcagcgataaagtttgttgtgctgcactgtcttttctgtaaaaataagaattgtttcgatcatgagtctgcaacttaactgcatacagtcaaaataaatgttgaagtgctaaagcaaaacataaatctgtgcacaaagtcaatcccttgcaaaatataatagaataaacagtacaaaccttaggagcagcagttggttggttttggcctagtctaacatggctctgagcattttttttctctttctttattctgcaatgtaatcaaaactactagtcaatcatacatgctatattttgtaaaaaacagaaatttatagacatgatgaataaaaaataaccttggatgcttcaacaacttttcgtgcattcatcacatggttttccttgttagttttttttttctatagaagaaggtaaaaaaacattacgaaaactctaagacatggattgtttcatcaattgttgcattagaatagcacaaacatggtgagttgcaatcaataaaaaaaatgaaaactaacctgtgcagaaataaccttcctttgtttcccatagtcatgttgttcccaattttgtttgttctaaaataaaatgcataagattatgaactatagtaaacaaccatagctacaaacagtacaaaatcatataatgttaagtaatcatggtgggttcagaataataatatagttggtaagacaagtaccttgtcttcaacacattgcttggTttttggttgcaaatcctcatttggaacatggctctgtatattctgttttgaaagggaccatatattctcaattacaaaatagtgcaactattcctagctttacaatagtgcaattccagtatattaccatcatattgttttcctcctgaaccatatcgttttcctcctcagcaatacaaatttcttgcaagggatggtcagaatacactctctgtcaacagtagaaaagaaaaggagttttagaccatatttttttccaaactatatagggtaatcttccatagagatacataccctccttttcgaaatagggccatcaacactagcttctttgtttgtagatactcgatctaaacctccctgtaacaccaactaggtaggttagatacattcagtgagttacaaacattttaggacaacttcttcaaattctcacctgattcatttgttctttttccaacttgtttgtcttcgctttcaattccaaaagctcagcatcatgattctggacatgattttcgatcttttccaactgcagtctagcagccacaacatcttcactccagttatcatccagtctagtaacatttatattctttaagcgtcaggaatttggcacatcgagaacttgtttaggctttggaactagtccaagaccatgcacatgcccaggcttgtcatctccaagtatttggttcaatgcatctcctttccaagcagtccttccttcactagtgtctgctaaagctggttgttcaactacaagtttcttcaaattatcctaaacacaggaacaatatgaatagaacatatgaaaaaaagttgaaacttaaattatctatagtttagatttgatagtataccacatgcccatttagattcttgccagttttgcgcttgtgtgtttggatgtacacaatagctctgtgaggattctttgcaggatcttttTGtctctatggaacatgtgaacaaatcattaaatcctacacagtctatataggattggaatggaaattggacaaatgctattccaggacatgttttaccatctcttctcttgtacgagcaaaactatttgtccctgctgtgtgtaatgccttcttctttcgacaattttccttgttctgcttgcttattttctgttctcgtatcataagagttagcaaatatacatgagcacaacattgtttagttcaattgatagtctcatttgtaagaacatcacagtagtgaatatgcaatgcctatataccttcgatttctcgctcatccaatgattgataagagcaatccactggtcaggaagcacatcagctgggacattgttgcaattagcttctttgctcttattcacatcaaaatacttttcttttagttttgctttatgtcccctccatctctctctaattgtttttaatatgaattcttccatccgaggagcataaaggaatctcatctggataccaacaaagaaactcatctagggattttgtttttctctctctctttcctattagaaatctccagtctgtgtagcttaagctacacaaagtaccattcctagctaccattccaagaaatttagacaaaattccagcttcatctcctactgcctggttgagatcattgcactgaaccacaatcctaagccttttcggaaggttccaaatatctttcagttttgtcttccCAcgtgtttcaattgttccattttcatctgttcaatgttaaattgcaaggataagaagaataatttcattatttcttaccatcaagatttagtatttacctcgaacattaatttcaacatcatcatcagattcttcattgccttctccagcattcatactagcatcgtcatcagtatcttcattggcttctccaacatcgtcattagtatcttcattaccctcttgaacatcactacatattgtttcttgttcagatggtgtggcaagctgtttaggggcattttcttctgcaatgtgttcctctgacaaatattcctcatggctttgaacaatgcaccgccttctactccttgccatatctgctgcaccaaaacaaaaatagcataaacctatgtattgcagtttgagtaccacttttctctactgctctagaagaataatttcagaattggctaaaactttaggcattttactctactgttgtccaaaaaagtaccactatggtttgtattgatgagaaaggtgctagcctacaggttattagatacctctgttagctaatgaacaattttcaaatagaggtgtcaacacattaaaaattgaacaataaatttaccaattccaatttggatttatttgccagtcactaattcctttgtccattttaattggccaacaatttgaaacaagtaattgatagaaagaacaaaatttaatttgacgcaaggagataaaatgcatagatggacagtgaacgatcaaaagcaaaagtggtttattcggctagattgcaacatccaggacagaggaatataaaaagatcacacattggattgcttactggtctgttctagcctaataggctctgtcacctaggattcatcactgcatctgatccaaaacctgcatacagaacatatatatcaaattagtaatgtagtatagtgctgaaatggaattaggcccgagtgtgatttggcaacacagctaagtagtgaaacatgtaggaactaggaagggaggcggagatgcaggagcatggcggcagggccgtggggtgcgcggcgcggtgtagacgtaggcgctggggaggcaaaaccgcactagcgctgcagtgcacggccaccgggcacgaggcgtcgccgcgtggccctcagcggccgtgggggagctcgcctgctcagggttgttggtcggcagggaggtgtaggtagGTgcataggatggcagccaacacagattgggagaggagtggacacgcggagcggagagaagaagagaggggatagagtttcgttggagaagaaaacccacccacgatctctttgttggagaatggagagagaggggatagagtttttcacgggcaattagattttcttggagggataaaatggagggaataaatggcgcgacaacgaaagacgtgagaaaaaaaaatattgagaccgaaaaaaatggaggGAgagcaaaataatttaagctcat
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| CDS seq | atgagcttaaattattttgctcTCcctccatttttttcggtctcaatatttttttttctcacgtctttcgttgtcgcgccatttattccctccattttatccctccaagaaaatctaattgcccgtgaaaaactctatcccctctctctccattctccaacaaagagatcgtgggtgggttttcttctccaacgaaactctatcccctctcttcttctctccgctccgcgtgtccactcctctcccaatctgtgttggctgccatcctatgcACctacctacacctccctgccgaccaacaaccctgagcaggcgagctcccccacggccgctgagggccacgcggcgacgcctcgtgcccggtggccgtgcactgcagcgctagtgcggttttgcctccccagcgcctacgtctacaccgcgccgcgcaccccacggccctgccgccatgctcctgcatctccgcctcccttcctaaataaaggaaacatgaaccagaatgatcacatgcaacaagggaagaataattctaatgcttataagattggaactaatgtattcttgaaaagctggaaaaatcgaaataagaatgtggctgttgcttcaattgtaagctgtgatccaacacgcaaagttgcaggtgttgagctaggaactgaatacttgatggtgcatgttcattttccattggcaaaatatgaagaattgatcaggccatacaaaggctacaaaattattagcaatgtcgtaaaacttgatattgcgtggccagcaatttttatacggtgctatttctcaatttctttagatgtggtcttctttcttccaatgttgtatcaatggttgtttttttctgttacaggttga
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| Protein seq | MSLNYFALPPFFSVSIFFFLTSFVVAPFIPSILSLQENLIAREKLYPLSLHSPTKRSWVGFLLQRNSIPSLLLSAPRVHSSPNLCWLPSYAPTYTSLPTNNPEQASSPTAAEGHAATPRARWPCTAALVRFCLPSAYVYTAPRTPRPCRHAPASPPPFLNKGNMNQNDHMQQGKNNSNAYKIGTNVFLKSWKNRNKNVAVASIVSCDPTRKVAGVELGTEYLMVHVHFPLAKYEELIRPYKGYKIISNVVKLDIAWPAIFIRCYFSISLDVVFFLPMLYQWLFFSVTG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0006720 | OsLima_05g0006720.01 | Chr05 | 6409431 | 6414596 | - | NAM | ||
| CDS seq | atgagcttaaattattttgctcTCcctccatttttttcggtctcaatatttttttttctcacgtctttcgttgtcgcgccatttattccctccattttatccctccaagaaaatctaattgcccgtgaaaaactctatcccctctctctccattctccaacaaagagatcgtgggtgggttttcttctccaacgaaactctatcccctctcttcttctctccgctccgcgtgtccactcctctcccaatctgtgttggctgccatcctatgcACctacctacacctccctgccgaccaacaaccctgagcaggcgagctcccccacggccgctgagggccacgcggcgacgcctcgtgcccggtggccgtgcactgcagcgctagtgcggttttgcctccccagcgcctacgtctacaccgcgccgcgcaccccacggccctgccgccatgctcctgcatctccgcctcccttcctaaataaaggaaacatgaaccagaatgatcacatgcaacaagggaagaataattctaatgcttataagattggaactaatgtattcttgaaaagctggaaaaatcgaaataagaatgtggctgttgcttcaattgtaagctgtgatccaacacgcaaagttgcaggtgttgagctaggaactgaatacttgatggtgcatgttcattttccattggcaaaatatgaagaattgatcaggccatacaaaggctacaaaattattagcaatgtcgtaaaacttgatattgcgtggccagcaatttttatacggtgctatttctcaatttctttagatgtggtcttctttcttccaatgttgtatcaatggttgtttttttctgttacaggttga
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| Protein seq | MSLNYFALPPFFSVSIFFFLTSFVVAPFIPSILSLQENLIAREKLYPLSLHSPTKRSWVGFLLQRNSIPSLLLSAPRVHSSPNLCWLPSYAPTYTSLPTNNPEQASSPTAAEGHAATPRARWPCTAALVRFCLPSAYVYTAPRTPRPCRHAPASPPPFLNKGNMNQNDHMQQGKNNSNAYKIGTNVFLKSWKNRNKNVAVASIVSCDPTRKVAGVELGTEYLMVHVHFPLAKYEELIRPYKGYKIISNVVKLDIAWPAIFIRCYFSISLDVVFFLPMLYQWLFFSVTG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0006720 | OsLima_05g0006720.02 | Chr05 | 6412798 | 6414438 | - | IsoSeq | ||
| CDS seq | acaaagagatcgtgggtgggttttcttctccaacgaaactctatcccctctcttcttctctccgctccgcgtgtccactcctctcccaatctgtgttggctgccatcctatgcACctacctacacctccctgccgaccaacaaccctgagcaggcgagctcccccacggccgctgagggccacgcggcgacgcctcgtgcccggtggccgtgcactgcagcgctagtgcggttttgcctccccagcgcctacgtctacaccgcgccgcgcaccccacggccctgccgccatgctcctgcatctccgcctcccttcctagttcctacatgtttcact
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| Protein seq | TKRSWVGFLLQRNSIPSLLLSAPRVHSSPNLCWLPSYAPTYTSLPTNNPEQASSPTAAEGHAATPRARWPCTAALVRFCLPSAYVYTAPRTPRPCRHAPASPPPFLVPTCFT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.237546 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0340800 | SBH | 5.174430 | 5.893974 | 1.033047 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006720 | RBH | 0.880681 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006770 | RBH | 0.000000 | 0.0 | 2.090800 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006650 | RBH | 5.853002 | 0.000000 | 17.162111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006720 | RBH | 1.633404 | 0.056044 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006810 | RBH | 31.654949 | 2.448279 | 57.095963 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0095200 | RBH | 41.739334 | 16.5281935 | 125.3676185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006650 | RBH | 0.152408 | 0.000000 | 0.135807 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0094200 | RBH | 18.5546475 | 24.420311 | 27.884187 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008580 | RBH | 1.528968 | 0.495998 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006650 | RBH | 0.968633 | 0.927839 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006730 | RBH | 17.451418 | 12.912572 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006810 | RBH | 6.590096 | 0.997123 | 3.234447 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006780 | RBH | 4.384497 | 3.360063 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006550 | RBH | 0.540537 | 0.000000 | 0.717850 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
