Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_08g0013370 | OGI:01077750 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr08:17017404-17022879 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACGAAACTCTATCCCCTCTCTTCTTCTCTCTGCACTGCTCCTCCCCTCAGGCCTAAGCCGGGCACCAATCTGAAGGTAAGGCACCATGGTGATTTGCTGGCCAGCCGCTCCGCGTGTCCACACCTCTCCCAATCTGTGTTGGCTGCCATCCTCTGCACCTACGCCTCCCCGCCGACCAACAACCCTGAGCAGGCGAGCTCCCCCACGGCCGCTGAGGGCCACGCGGTGACGCCTCGTGCCCGGTGGCCGTGCGCTGCAGCGCTAGTGCGGTTTTGCCTCCCCAGCGCCTACGTCTACACCGCGCCGCGCAGCCCACGGCCCTGCCGCCATGCTCCTGCATCTCCGCCTCCCTTCCTAGTTCCTACACGTTTCACTGCCTAGCTGTGTTGCCAAATCACACTCGGGCCTAATTCCATTTCAGCACTATACTACATTACTAATTTGATATATATGTTCTCTGTATGCAGGTTTTGGATCAGATGCAGTGATCAATCCTAGGTGACAGAGCCTATTAGGCTAGAACAGACCAGTAAGCAATCCAATGTGTGATCTTTTTATATTCCTCTGTCCTGGATGTTGCAATCTAGCCGAATAAACCACTTTTGCTTTTGATCGTTCACTGTCCATCTATGCATTTTATCTCCTTGCGTCAAATTAAATTTTGTTCTTTCTATCAATTACTTGTTTCAAATTGTTGGCCAATTAAAATGGACAAAGGAATTAGTGACTGGCAAATAAATCCAAATTGGAATTGGTAAATTTATTGTTCAATTTTTAATGTGTTGACACCTCTATTTGAAAATTGTTCATTAGCTAACAGAGGTATCTAATAACCTGTAGGCTAGCACCTTTCTCATCAATACAAACCATAGTGGTACTTTTTTGGACAACAGTAGAGTAAAATGCCTAAAGTTTTAGCCAATTCTGAAATTATTCTTCTAGAGCAGTAGAGAAAAGTGGTACTCAGACTGCAATACATAGGTTTATGCTATTTTTGTTTTGGTGCAGCAGATATGGCAAGGAGTAGAAGGCGGTGCATTGTTCAAAGCCATGAGGAATATTTGTCAGAGGAACACATTGCAGAAGAAAATGCCCCTAAACAGCTTGCCACACCATCTGAACAAGAAACAATATGTAGTGATGTTCATGAGGGTAATGAAGATACTGATGACGATGTTGGAGAAGCCAATGAAGATACTGATGACGATGCTAGTATGAATGCTGGAGAAGGCAATGAAGAATCTGATGATGATGTTGAAATTAATGTTCGAGGTAAATACTAAATCTTGATGGTAAGAAATAATGAAATTATTCTTCTTATCCTGGACTGTTGAGCATCACTTTTATCTTTGCAATTTAACATTGAACAGATGAAAATGGAACAATTGAAACACGTGGGAAGACAAAACTGAAAGATATTTGGAACCTTCCGAAAGGGCTTAGGATTGTGGTTCAGTGCAATGATCTCAACCAGGCAGTAGGAGATGAAGCTGGAATTTTGTCTAAATTTCTTGGAATGGTAGCTAGGAATGGTACTTTGTGTAGCTTAAGCTACACAGACTGGAGATTTCTAATAGGAAAGAGAGAGAGAAAAACAAATGGATTAAAAGTTAAAAAGGACATTCTTAAGCAAGTAAAGGTAAACCCTTCCCACATCTACACTTTTGTTAACTTCCTGTATTATTGTACAGCTTCCTGTATTATTGTACAGTGCATATCCCTAGATGAGTTTCTTTGTTGGTATGCAGATGAGATTCCTTTATGCTCCTCGGATGGAAGAATTCATATTAAAAACAATTAGAGAGAGATGGAGGGGACATAAAGCAAAACTAAAAGAAAAGTATTTTGATGTGAATAAGAGCAAAGAAGCTAATTGCAACAATGTCCCAGCTGATGTGCTTCCTGACCAGTGGATTGCTCTTATCAATCATTGGATGAGCGAGAAATCGAAGGTATATAGGCGTTGCATATTCACTACTGTGATGTTCTTACAAATGAGACTATCAATTGAACTAAACAATGTTGTGCTCATGTATATTCGCTAACTCTTATGATACGAGAACAGAAAATAAGCAAGCAGAACAAGGAAAATTGTCGAAAGAAGAAGGCATTACACACTGCAGGGACAAAGAGTTTTGCTCGTACAAGAGAAGAGATGGTAAAACATGTCCTGGATCGTCCAATTTCCATTCCAATCCTATATAGACTGTGTAGGATTTAATGATTTGTTCACATGTTCCATAGAGACAAAAAGATCCTGCAAAGAAGAATCCTCACAGAGCTGTTGTGTACATTCACACACACAAGCGCAAAACTGGCAAGAATCTAAATGGGCATGTGGTATACTATCAAATCTAAACCATAGATAATTTAAGTTTCAACATTTTTCATATGTTCTATTCATATTGTTCCTGTGTTTAGGATAATTTGAAGAAACTTGTAGCTGAACAACCAGCTTTAGCAGACACTAGTGAAGGAAGGACTGCTTGGAAAGGAGATGCATTGAACCAAATCCTTGGAGATGACAAGCCTGGGCATGTGCATGGTCTTGGACTAGTTCCAAAGCCTAAACAAGTTCTTGATGTGCCAACTTCCCGACGCTTAAAGAATATAAATGTTACTAGACTGGATGATAACTGGAGTGAAGATGTTGTGGCTGCTAGACTGCAGTTGGAAAAGATCAAAAATCATGTCCAGAATCATGATGCTGAGCTTTTGGAATTGAAAGTGAAGACAAACAAGTTGGAAAAAGAACAAATGAATCAGGTGAGAATTTGAAGAAGTTGTCCTAAAATGTTTGTAACTCACTGAATGTATCTAACCTACCTAGTTGGTGTTACAGGGAGGTTTAGATCGAGTATCTACAAACAAAGAAGCTAGTGTTGATGGTCCTATTTTGAAAAGGAGGGTATGTATCTCTATGGAAGATTACCCTATATAGTTTGGAAAAAATATGGTCTAAATCTCCTTTTCTTTTCTACTGTTGACAGAGGGTGTATTCTGACCGTCCCTTGCAAGAAATTTGTATTGCTGAGGAGGAAAACGATATGGTTCAGGAAGAAAACAATATGATGGTAATATACTGGAATTGCACTATTGTATAGCTAGGAATAGTTGCACTATTTTGTAATTGAGAATATATGGTCCCTTTCAAAACAGAATACATGCTCCCTTTCAAAACAGAATATACAGAGCCATGTTCCAAATGAGGATTTGCAACCAAAAACCAAGCAATGTGTTGAAGACAAGGTACTTGTCTTACCAACTATATTATTATTCTGAACCCCCCATGATTACTTAACATTACATGATTTTGTACTGTTTGTAGCTATGGTTGTTTACTATAGTTCATAATCTTATGCATTTTATTTTAGAACAAACAAAATTGGGAACAACATGACTATGGGAAACAAAGGAAGGTTATTTCTGCACAGGTTAGTTTTCATTTTTTTTATTAATTGCAACTCACCATGTTTGCGCTATTCTAATGCAACAATTGATGAAACAATCCATGTCTTAGAGTTTTCGTAATGGTTTTTTGCCTTCTTCTATAGAAAAAAAAAACTAACAAGGAAAACCATGTGATGAATGCACGAAAAGTTGTTGAAGTATCCAAGGTTATTTTTTATTCATCATGTCTATAAATTTCTGTTTTTTTACAAAATATAGCATGTATGATTGACTAGTAGTTTTGATTACATTGCAGAATAAAGAAAGAGAAAAAAATGCTCAGAGCCATGTTAGACTAGGCCAAAACCAACCAACTGCTACTCCTAAGGTTAGTATTGTTTATTCTATTATATTTTGCAAGGGATTGACTTTGTGCACAGATTTATGTTTTGCTTTAGCACTTCAACATTTATTTTGACTGTATGCAGTTAAGTTGCAGACTCATGATCGAAACAATTCTTATTTTTACAGAAAAGACAGTGCAGCACAACAAACTTTATCACTGACAATTCAATGGAGGTAAACCATATTAAAGTTTTACTGTACACTGCTTCATAAATATATGGTATGAATCTCCATTTGGTTTCTACTATTGTTAGAGAGTGTGTGTTAACGGTCCCTTGCAAGAAAATTCTATGGTTGAGCATCAAAACAATATGATTGAGCATGAAAACAATGCTATGGTAAAGTATAAAAATTACACTGTTTTTAGCTGGGAATAGTTGCACTATTTTCTAACTAGTAATATTGTCTCTCTTTCACATCAGGACACAAATATCCATGTTCAGGACAAGGTTTTGCAACTACCAACCAAGCAATCTACTATAGATAAGGTCATTCTCTTCCTATTTGTTATGTCGAACTCACCACATAGCATTATATGATCTCGATATTGTTTGCAACTGTCAACGTTTATTGTAGCTGTTCATTACAATCTTATGTCTTATTTTATTACAGAGCAATCAAACTTATGGCCAAAATCACCTTGAGAAACAGAGGAAGATTATTTGTGTGAAGGCTAGTCTTCACTTTTTTATTGATTGGAACTCACAGTGTTTAATTATAAAAATAACTAGATTATTGTAGTTTGTGCCAATATTTTGATATTCCATGCAGAATAAAGGAAACATGAACCAGAATGATCACATGCAACAAGGGAAGAATAATTCTAATGCTTATAAGGTAAATTTTCACTTCTGAAGCCACCTAATATAAAGATAAGCTATAGAATTCTATTTGGTATAATATGTTTGTACTTTATAGTTAAATTATTGAATCTTGATCCAAATAACTTTGTACAGAAACAACAGTGCAACATAGTGGACATTATGGATGCCAATTCATTGGAGGTAAAACTTTTAATATGATGTTCTTTTCCATACTTAATTGCTCTTTATATAGAGATAATGCTGATGGACATATATTTATGCACCAGATTGGAACTAATGTATTCTTGAAAAGCTGGAAAAATCGAAATAAGAATGTGGCTGTTGCTTCAATTGTAAGCTGTGATCCAACACGCAAAGTTGCAGGTGTTGAGCTAGGAACTGAATACTTGATGGTGCATGTTCATTTTCCATTGGCAAAATATGAAGAATTGATCAGGCCATACAAAGGCTACAAAATTATTGGCAATGTCGTAGGACTTGATATTGCGTGGCCAGCAATTTTTGTACGGTGCTATTTCTCAATTTCTTTAGATGTGGTCTTCTTTCTTCCAATGTTGTATCAATGGTTGTTTTTTTTTCTGTTACAGGTTGACAAGATAAATGGATCATGATCTGGGGCAATATGGTTACTGCAAGGTGGACAACTATGTCATCTAAAGATCCCTTGTGAATATGATGATGACTGTAATGTGGAAGATGGTGACAATGATAGTGGCAACTTCAGTTGCATGTTTTTTTTTCTATAGTTTAGATTACATTTGTGCATGATGTTCTGAACAAAATTTAATGTCATGACTTATGAGGATGATTTTCCATGTAATACAAAAAATTTTCTTTAATTACAATTAGTTTTATG
More
|
||||||||||
| CDS seq | GCGAGCTCCCCCACGGCCGCTGAGGGCCACGCGGTGACGCCTCGTGCCCGGTGGCCGTGCGCTGCAGCGCTAGTGCGGTTTTGCCTCCCCAGCGCCTACGTCTACACCGCGCCGCGCAGCCCACGGCCCTGCCGCCATGCTCCTGCATCTCCGCCTCCCTTCCTAGTTCCTACACGTTTTGGATCAGATGCAGTGATCAATCCTAGCTGGAAAAATCGAAATAAGAATGTGGCTGTTGCTTCAATTGTAAGCTGTGATCCAACACGCAAAGTTGCAGGTGTTGAGCTAGGAACTGAATACTTGATGGTGCATGTTCATTTTCCATTGGCAAAATATGAAGAATTGATCAGGCCATACAAAGGCTACAAAATTATTGGCAATGTCGTAGGACTTGATATTGCGTGGCCAGCAATTTTTGTTGACAAGATAAATGGATCATGA
More
|
||||||||||
| Protein seq | ASSPTAAEGHAVTPRARWPCAAALVRFCLPSAYVYTAPRSPRPCRHAPASPPPFLVPTRFGSDAVINPSWKNRNKNVAVASIVSCDPTRKVAGVELGTEYLMVHVHFPLAKYEELIRPYKGYKIIGNVVGLDIAWPAIFVDKINGS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0013370 | OsAzu_08g0013370.01 | Chr08 | 17017597 | 17022634 | + | NAM | ||
| CDS seq | GCGAGCTCCCCCACGGCCGCTGAGGGCCACGCGGTGACGCCTCGTGCCCGGTGGCCGTGCGCTGCAGCGCTAGTGCGGTTTTGCCTCCCCAGCGCCTACGTCTACACCGCGCCGCGCAGCCCACGGCCCTGCCGCCATGCTCCTGCATCTCCGCCTCCCTTCCTAGTTCCTACACGTTTTGGATCAGATGCAGTGATCAATCCTAGCTGGAAAAATCGAAATAAGAATGTGGCTGTTGCTTCAATTGTAAGCTGTGATCCAACACGCAAAGTTGCAGGTGTTGAGCTAGGAACTGAATACTTGATGGTGCATGTTCATTTTCCATTGGCAAAATATGAAGAATTGATCAGGCCATACAAAGGCTACAAAATTATTGGCAATGTCGTAGGACTTGATATTGCGTGGCCAGCAATTTTTGTTGACAAGATAAATGGATCATGA
More
|
|||||||
| Protein seq | ASSPTAAEGHAVTPRARWPCAAALVRFCLPSAYVYTAPRSPRPCRHAPASPPPFLVPTRFGSDAVINPSWKNRNKNVAVASIVSCDPTRKVAGVELGTEYLMVHVHFPLAKYEELIRPYKGYKIIGNVVGLDIAWPAIFVDKINGS |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0013370 | OsAzu_08g0013370.02 | Chr08 | 17017404 | 17022879 | + | IsoSeq | ||
| CDS seq | ATGAGGAATATTTGTCAGAGGAACACATTGCAGAAGAAAATGCCCCTAAACAGCTTGCCACACCATCTGAACAAGAAACAATATGTAGTGATGTTCATGAGGGTAATGAAGATACTGATGACGATGTTGGAGAAGCCAATGAAGATACTGATGACGATGCTA |
|||||||
| Protein seq | MRNICQRNTLQKKMPLNSLPHHLNKKQYVVMFMRVMKILMTMLEKPMKILMTML |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr08 | 17017404 | 17017872 | + | OsAzu_08g0013370.02 | OsAzu_08g0013370.02,OsAzu_08g0013370.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.477286 | 17.315722 | 16.015589 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28010 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006720 | RBH | 0.880681 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006770 | SBH | 0.000000 | 0.0 | 2.090800 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013270 | RBH | 8.266968 | 4.813106 | 22.449795 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013580 | RBH | 2.241811 | 0.274552 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006810 | SBH | 31.654949 | 2.448279 | 57.095963 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006650 | SBH | 0.152408 | 0.000000 | 0.135807 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0281200 | RBH | 0.0246435 | 0 | 0.8189765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008580 | SBH | 1.528968 | 0.495998 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006650 | SBH | 0.968633 | 0.927839 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006730 | SBH | 17.451418 | 12.912572 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006810 | SBH | 6.590096 | 0.997123 | 3.234447 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006780 | SBH | 4.384497 | 3.360063 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022630 | RBH | 0.512635 | 4.929079 | 6.489412 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013150 | SBH | 0.0 | 0.0 | 0.000000 |
