Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0006620 | OGI:03012470 | 2/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:4707691-4708878 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcaggttcagattatgcagggagaggaggaagataggctttgctggaagtacacaccctcaggagtctgttcagccaagagtgcttacaagacaatttacaatgaaatgtaccccaatcaaaatcaggtcagtaatttaacaaaaaatcttttgaaattaatctggaaacacaggtacatgcctcccagagtcaaaacttttggatggaggctgctgagtaatgctctcccaactgctcaaagaatgcaccacaggatcaaaaccgttagtcccaattgtcagacctgtggtcaaagggaggatgacttgcatctcttctttctctgtaatttcagtcgtttatgttggttcgtctctgactttaatctcaaagctgataatctttcttctctaggctctgttcaagatattattgcctatctttcagctaatggcatcaatatatacaatcttttaattatgctttggcaggtttggaaagcaaggaatgatatcaacttcaaaacaaagatttgggagccacaacaagtgtgcaatgctgcgcaggcaatggcaaagacatatgaaagtgttcatcaaatggaagaagacagttgccaagacttcaatcgggctgaggagaataatataagaaattctgttgttaaaattcctgcaggaacaagagtttatgtggatgcctcttggaaggaagagaaaacaggagtagggatcttcatccacaaccctagcaatcacaatgctattgtcatcaaagctcaaagtctcaatgcaggaactcctttgctagcagaagctgaaggattatttttagctatgcaaattgctcgtcatcttcagctgcaagaccctatttttctctcagataacagtgagatagtgaatgctgtgcagaacgaggactacatacaaaaccccggacattggtctctgagaccaattatttcaagaattaaaaattttctgcaggatcaacaagttcgaatcatttggatctctagagagctcaacaaagttgcagatggccttgcaaagtcagcaagacaagctcagactaacagctgcttagcttttgattgctctaatatttctcacatttgttccagagatgtttgtcctactaaaagagctctttccttcactcctaatggagcagttaatgtaactcatgctttgtgtttctaa
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| CDS seq | atgcaggttcagattatgcagggagaggaggaagataggctttgctggaagtacacaccctcaggagtctgttcagccaagagtgcttacaagacaatttacaatgaaatgtaccccaatcaaaatcaggtcagtaatttaacaaaaaatcttttgaaattaatctggaaacacaggtacatgcctcccagagtcaaaacttttggatggaggctgctgagtaatgctctcccaactgctcaaagaatgcaccacaggatcaaaaccgttagtcccaattgtcagacctgtggtcaaagggaggatgacttgcatctcttctttctctgtaatttcagtcgaacaagagtttatgtggatgcctcttggaaggaagagaaaacaggagtagggatcttcatccacaaccctagcaatcacaatgctattgtcatcaaagctcaaagtctcaatgcaggaactcctttgctagcagaagctgaaggattatttttagctatgcaaattgctcgtcatcttcagctgcaagaccctatttttctctcagataacagtgagatagtgaatgctgtgcagaacgaggactacatacaaaaccccggacattggtctctgagaccaattatttcaagaattaaaaattttctgcaggatcaacaagttcgaatcatttggatctctagagagctcaacaaagttgcagatggccttgcaaagtcagcaagacaagctcagactaacagctgcttagcttttgattgctctaatatttctcacatttgttccagagatgtttgtcctactaaaagagctctttccttcactcctaatggagcagttaatgtaactcatgctttgtgtttctaa
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| Protein seq | MQVQIMQGEEEDRLCWKYTPSGVCSAKSAYKTIYNEMYPNQNQVSNLTKNLLKLIWKHRYMPPRVKTFGWRLLSNALPTAQRMHHRIKTVSPNCQTCGQREDDLHLFFLCNFSRTRVYVDASWKEEKTGVGIFIHNPSNHNAIVIKAQSLNAGTPLLAEAEGLFLAMQIARHLQLQDPIFLSDNSEIVNAVQNEDYIQNPGHWSLRPIISRIKNFLQDQQVRIIWISRELNKVADGLAKSARQAQTNSCLAFDCSNISHICSRDVCPTKRALSFTPNGAVNVTHALCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0006620 | OsCMeo_03g0006620.01 | Chr03 | 4707691 | 4708878 | + | NAM | ||
| CDS seq | atgcaggttcagattatgcagggagaggaggaagataggctttgctggaagtacacaccctcaggagtctgttcagccaagagtgcttacaagacaatttacaatgaaatgtaccccaatcaaaatcaggtcagtaatttaacaaaaaatcttttgaaattaatctggaaacacaggtacatgcctcccagagtcaaaacttttggatggaggctgctgagtaatgctctcccaactgctcaaagaatgcaccacaggatcaaaaccgttagtcccaattgtcagacctgtggtcaaagggaggatgacttgcatctcttctttctctgtaatttcagtcgaacaagagtttatgtggatgcctcttggaaggaagagaaaacaggagtagggatcttcatccacaaccctagcaatcacaatgctattgtcatcaaagctcaaagtctcaatgcaggaactcctttgctagcagaagctgaaggattatttttagctatgcaaattgctcgtcatcttcagctgcaagaccctatttttctctcagataacagtgagatagtgaatgctgtgcagaacgaggactacatacaaaaccccggacattggtctctgagaccaattatttcaagaattaaaaattttctgcaggatcaacaagttcgaatcatttggatctctagagagctcaacaaagttgcagatggccttgcaaagtcagcaagacaagctcagactaacagctgcttagcttttgattgctctaatatttctcacatttgttccagagatgtttgtcctactaaaagagctctttccttcactcctaatggagcagttaatgtaactcatgctttgtgtttctaa
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| Protein seq | MQVQIMQGEEEDRLCWKYTPSGVCSAKSAYKTIYNEMYPNQNQVSNLTKNLLKLIWKHRYMPPRVKTFGWRLLSNALPTAQRMHHRIKTVSPNCQTCGQREDDLHLFFLCNFSRTRVYVDASWKEEKTGVGIFIHNPSNHNAIVIKAQSLNAGTPLLAEAEGLFLAMQIARHLQLQDPIFLSDNSEIVNAVQNEDYIQNPGHWSLRPIISRIKNFLQDQQVRIIWISRELNKVADGLAKSARQAQTNSCLAFDCSNISHICSRDVCPTKRALSFTPNGAVNVTHALCF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.939937 | 0.000000 | 1.585327 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643433 | SBH | 0.665818 | 0.710207 | 0.441691 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22090 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0643433 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004110 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004030 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024950 | SBH | 2.963561 | 4.127228 | 25.715715 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004020 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0015050 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0017900 | SBH | 0.0058265 | 0 | 0.0039875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018080 | SBH | 0.0 | 0.0 | 0.762598 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0023610 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0023640 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0015260 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0023540 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0023420 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G023440 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0023400 | SBH | 0.0 | 0.0 | 0.0 |
